Wall clock time and date at job start Wed Apr 1 2020 02:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38601 * 120.32217 * 2 1 4 4 N 1.31497 * 120.89680 * 179.97438 * 3 2 1 5 5 C 1.32740 * 121.64665 * 0.02562 * 4 3 2 6 6 C 1.48172 * 119.72451 * 179.97438 * 5 4 3 7 7 O 1.21515 * 119.99796 * 158.27727 * 6 5 4 8 8 N 1.34770 * 120.00079 * 338.27332 * 6 5 4 9 9 C 1.46952 * 120.84566 * 353.37003 * 8 6 5 10 10 C 1.53136 * 109.03093 * 125.96166 * 9 8 6 11 11 C 1.53113 * 109.48737 * 54.05450 * 10 9 8 12 12 C 1.52854 * 109.34533 * 299.35682 * 11 10 9 13 13 H 1.08994 * 108.60537 * 302.89026 * 12 11 10 14 14 C 1.52854 * 109.61331 * 182.80080 * 12 11 10 15 15 N 1.46895 * 109.75477 * 291.94778 * 14 12 11 16 16 C 1.36932 * 120.77690 * 127.11858 * 15 14 12 17 17 H 1.07995 * 120.00286 * 207.27074 * 16 15 14 18 18 C 1.38811 * 119.99909 * 27.27162 * 16 15 14 19 19 N 1.31626 * 119.99783 * 17.77534 * 18 16 15 20 20 Si 1.86793 * 120.00212 * 197.77087 * 18 16 15 21 21 H 1.48501 * 109.47225 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47214 * 119.99982 * 20 18 16 23 23 H 1.48503 * 109.47384 * 240.00078 * 20 18 16 24 24 C 1.46977 * 118.45501 * 307.09432 * 15 14 12 25 25 C 1.53103 * 108.61977 * 54.30234 * 24 15 14 26 26 C 1.47312 * 120.84916 * 173.33659 * 8 6 5 27 27 H 1.09003 * 110.07470 * 355.12330 * 26 8 6 28 28 C 1.39267 * 120.55395 * 0.25819 * 5 4 3 29 29 C 1.38582 * 120.32122 * 179.97438 * 2 1 3 30 30 C 1.50696 * 120.76011 * 0.02562 * 29 2 1 31 31 H 1.08997 * 109.46640 * 90.00091 * 1 2 3 32 32 H 1.09000 * 109.46972 * 209.99919 * 1 2 3 33 33 H 1.09002 * 109.47125 * 330.00200 * 1 2 3 34 34 H 1.07992 * 119.55355 * 359.97438 * 3 2 1 35 35 H 1.08991 * 109.54542 * 6.08709 * 9 8 6 36 36 H 1.09003 * 109.61023 * 245.86833 * 9 8 6 37 37 H 1.09002 * 109.46607 * 174.06227 * 10 9 8 38 38 H 1.09006 * 109.46645 * 294.04915 * 10 9 8 39 39 H 1.08995 * 109.48833 * 59.32400 * 11 10 9 40 40 H 1.09001 * 109.49063 * 179.39882 * 11 10 9 41 41 H 1.08998 * 108.88454 * 172.07513 * 14 12 11 42 42 H 1.09000 * 109.63746 * 52.27176 * 14 12 11 43 43 H 0.97003 * 120.00095 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.61117 * 294.56760 * 24 15 14 45 45 H 1.08997 * 109.61124 * 174.04319 * 24 15 14 46 46 H 1.09001 * 109.45144 * 184.62632 * 25 24 15 47 47 H 1.09003 * 109.43521 * 64.67760 * 25 24 15 48 48 H 1.08008 * 120.47249 * 179.71911 * 28 5 4 49 49 H 1.09001 * 109.47237 * 89.99984 * 30 29 2 50 50 H 1.08999 * 109.47168 * 210.00227 * 30 29 2 51 51 H 1.09004 * 109.47040 * 329.99750 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2096 0.0005 5 6 4.2295 0.0866 0.0005 6 6 5.7098 0.1512 0.0005 7 8 6.3593 -0.7991 0.3900 8 7 6.3358 1.2637 -0.4315 9 6 5.5784 2.3661 -1.0404 10 6 5.9041 3.6654 -0.2982 11 6 7.4208 3.8742 -0.2753 12 6 8.0819 2.7051 0.4544 13 1 7.6583 2.6362 1.4563 14 6 9.5895 2.9415 0.5420 15 7 10.1837 2.8590 -0.7989 16 6 10.9705 3.8711 -1.2801 17 1 11.0414 4.0407 -2.3443 18 6 11.6772 4.6792 -0.4000 19 7 11.8815 4.2823 0.8383 20 14 12.3382 6.3296 -0.9729 21 1 11.9759 6.5404 -2.3976 22 1 11.7475 7.4132 -0.1469 23 1 13.8162 6.3477 -0.8296 24 6 9.9145 1.6645 -1.6119 25 6 8.3988 1.4724 -1.7115 26 6 7.7965 1.4060 -0.3049 27 1 8.2094 0.5565 0.2391 28 6 3.5923 -1.1518 -0.0054 29 6 2.2067 -1.1963 0.0005 30 6 1.4780 -2.5153 0.0005 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6648 2.1305 -0.0004 35 1 4.5108 2.1606 -0.9646 36 1 5.8570 2.4657 -2.0895 37 1 5.4296 4.5038 -0.8082 38 1 5.5305 3.6033 0.7239 39 1 7.7964 3.9243 -1.2973 40 1 7.6520 4.8044 0.2436 41 1 10.0297 2.1777 1.1830 42 1 9.7818 3.9273 0.9653 43 1 12.3749 4.8471 1.4534 44 1 10.3636 0.7912 -1.1390 45 1 10.3325 1.7991 -2.6095 46 1 8.1846 0.5447 -2.2422 47 1 7.9619 2.3105 -2.2543 48 1 4.1695 -2.0647 -0.0099 49 1 1.3026 -2.8336 -1.0271 50 1 2.0810 -3.2636 0.5148 51 1 0.5230 -2.4028 0.5140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021638369.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:02 Heat of formation + Delta-G solvation = 12.435024 kcal Electronic energy + Delta-G solvation = -31250.858633 eV Core-core repulsion = 27343.007128 eV Total energy + Delta-G solvation = -3907.851505 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.15634 -40.97791 -39.35255 -37.17094 -35.72705 -34.25672 -33.95323 -33.39679 -31.87668 -31.15719 -29.44415 -28.29477 -27.21411 -26.38028 -24.49663 -23.80975 -23.56326 -23.25404 -22.62762 -20.70321 -19.50052 -18.53523 -18.46672 -17.76126 -17.15268 -16.94666 -16.39599 -16.16757 -15.97909 -15.84669 -15.56574 -15.28178 -15.13039 -15.00606 -14.59766 -14.37450 -14.18749 -13.93586 -13.79687 -13.69854 -13.61129 -13.55566 -13.33104 -13.20247 -12.92154 -12.71325 -12.60768 -12.46570 -12.45354 -12.13346 -11.99360 -11.86359 -11.79108 -11.50433 -11.36303 -11.32921 -11.08768 -10.53438 -10.50449 -10.04698 -9.94561 -9.52517 -8.70624 -7.86756 -5.31538 -0.38306 0.17756 1.46723 1.48743 1.59319 1.59510 1.87155 2.51710 2.69951 3.07034 3.28688 3.54267 3.62208 3.75059 3.77983 3.87700 3.90486 3.93029 4.07791 4.13582 4.18815 4.24588 4.35714 4.48172 4.53756 4.59420 4.64386 4.68482 4.71647 4.75480 4.78476 4.91133 4.91791 4.96316 5.00111 5.03331 5.06326 5.11108 5.14468 5.15094 5.21447 5.25857 5.31654 5.39420 5.45428 5.58932 5.60153 5.65466 5.68797 5.79987 6.37561 6.38825 6.68776 7.03716 7.13534 7.83340 8.38022 9.20705 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.026074 B = 0.002663 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.593204 B =10512.727539 C =11074.063814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.108 4.108 3 C 0.092 3.908 4 N -0.463 5.463 5 C 0.056 3.944 6 C 0.560 3.440 7 O -0.582 6.582 8 N -0.582 5.582 9 C 0.076 3.924 10 C -0.114 4.114 11 C -0.098 4.098 12 C -0.104 4.104 13 H 0.052 0.948 14 C 0.190 3.810 15 N -0.600 5.600 16 C -0.253 4.253 17 H 0.071 0.929 18 C -0.051 4.051 19 N -0.938 5.938 20 Si 0.966 3.034 21 H -0.264 1.264 22 H -0.290 1.290 23 H -0.295 1.295 24 C 0.144 3.856 25 C -0.122 4.122 26 C 0.160 3.840 27 H 0.064 0.936 28 C -0.120 4.120 29 C -0.053 4.053 30 C -0.118 4.118 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.195 0.805 35 H 0.152 0.848 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.047 0.953 41 H -0.017 1.017 42 H 0.064 0.936 43 H 0.249 0.751 44 H 0.008 0.992 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.074 0.926 48 H 0.136 0.864 49 H 0.092 0.908 50 H 0.072 0.928 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.656 -7.991 -4.148 30.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.110 4.110 3 C -0.067 4.067 4 N -0.175 5.175 5 C -0.079 4.079 6 C 0.348 3.652 7 O -0.462 6.462 8 N -0.311 5.311 9 C -0.045 4.045 10 C -0.152 4.152 11 C -0.136 4.136 12 C -0.124 4.124 13 H 0.071 0.929 14 C 0.064 3.936 15 N -0.323 5.323 16 C -0.383 4.383 17 H 0.088 0.912 18 C -0.246 4.246 19 N -0.584 5.584 20 Si 0.794 3.206 21 H -0.188 1.188 22 H -0.217 1.217 23 H -0.222 1.222 24 C 0.018 3.982 25 C -0.162 4.162 26 C 0.057 3.943 27 H 0.082 0.918 28 C -0.141 4.141 29 C -0.060 4.060 30 C -0.174 4.174 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.106 0.894 34 H 0.211 0.789 35 H 0.168 0.832 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.001 0.999 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.026 0.974 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.154 0.846 49 H 0.110 0.890 50 H 0.091 0.909 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -28.735 -7.626 -3.857 29.979 hybrid contribution 1.227 -0.021 0.346 1.275 sum -27.508 -7.647 -3.511 28.766 Atomic orbital electron populations 1.20947 0.86972 1.04902 1.04186 1.21418 0.99682 0.92610 0.97333 1.23441 0.88585 0.99686 0.94999 1.67324 1.09589 1.28586 1.11983 1.20753 0.92503 0.91005 1.03682 1.18501 0.87267 0.82151 0.77304 1.90730 1.67400 1.37452 1.50636 1.48346 1.07420 1.17236 1.58130 1.22891 1.00998 0.85110 0.95528 1.21766 0.94750 0.97604 1.01074 1.21387 0.95295 0.96262 1.00648 1.21814 0.97644 0.95073 0.97915 0.92933 1.20408 0.87984 0.99271 0.85965 1.44211 1.55664 1.17602 1.14830 1.19507 1.19598 1.06912 0.92288 0.91154 1.25784 0.98729 1.03335 0.96755 1.70219 1.44251 1.37327 1.06604 0.85224 0.77033 0.80091 0.78210 1.18796 1.21709 1.22238 1.20981 0.93206 0.88588 0.95409 1.22165 0.96931 1.01540 0.95532 1.21074 0.79079 0.97218 0.96974 0.91817 1.22031 0.95653 0.97867 0.98568 1.20556 0.92030 0.97894 0.95546 1.20979 1.00926 0.91238 1.04217 0.88979 0.89555 0.89401 0.78857 0.83170 0.92229 0.88801 0.92307 0.91987 0.93384 0.99923 0.91797 0.94183 0.97369 0.91612 0.91636 0.90794 0.84590 0.88971 0.90937 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.43 9.65 71.24 0.69 0.26 16 2 C -0.11 -1.29 5.91 -19.69 -0.12 -1.40 16 3 C 0.09 1.36 10.86 84.83 0.92 2.28 16 4 N -0.46 -10.52 6.52 -184.92 -1.21 -11.73 16 5 C 0.06 1.53 6.42 41.90 0.27 1.80 16 6 C 0.56 19.79 7.60 86.88 0.66 20.45 16 7 O -0.58 -24.48 16.02 -3.76 -0.06 -24.54 16 8 N -0.58 -19.90 2.65 -796.96 -2.11 -22.02 16 9 C 0.08 2.11 5.64 86.34 0.49 2.59 16 10 C -0.11 -3.19 6.08 30.68 0.19 -3.01 16 11 C -0.10 -3.58 4.84 30.58 0.15 -3.44 16 12 C -0.10 -4.31 2.51 -10.84 -0.03 -4.34 16 13 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 14 C 0.19 9.75 4.65 86.26 0.40 10.15 16 15 N -0.60 -30.96 2.67 -699.89 -1.87 -32.82 16 16 C -0.25 -13.97 9.60 84.03 0.81 -13.16 16 17 H 0.07 3.76 7.89 -2.91 -0.02 3.74 16 18 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 19 N -0.94 -56.77 11.20 21.65 0.24 -56.53 16 20 Si 0.97 45.27 29.59 68.60 2.03 47.30 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 C 0.14 6.37 6.51 86.32 0.56 6.94 16 25 C -0.12 -4.59 5.04 30.68 0.15 -4.44 16 26 C 0.16 6.31 2.59 44.94 0.12 6.43 16 27 H 0.06 2.88 7.10 -2.39 -0.02 2.86 16 28 C -0.12 -2.73 9.33 22.61 0.21 -2.52 16 29 C -0.05 -0.79 5.91 -19.69 -0.12 -0.90 16 30 C -0.12 -0.95 9.67 71.23 0.69 -0.26 16 31 H 0.09 0.17 8.14 -2.39 -0.02 0.16 16 32 H 0.09 0.17 6.06 -2.39 -0.01 0.15 16 33 H 0.09 0.14 8.09 -2.39 -0.02 0.12 16 34 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.15 3.71 3.92 -49.86 -0.20 3.51 16 36 H 0.06 1.60 7.27 -2.39 -0.02 1.58 16 37 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.06 2.42 6.22 -2.39 -0.01 2.40 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H 0.06 3.63 6.03 -2.39 -0.01 3.62 16 43 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.07 2.75 7.94 -2.39 -0.02 2.73 16 46 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.07 2.69 5.42 -2.39 -0.01 2.67 16 48 H 0.14 3.22 7.80 -2.91 -0.02 3.20 16 49 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.07 0.64 8.10 -2.39 -0.02 0.62 16 51 H 0.10 0.38 6.07 -2.39 -0.01 0.36 16 Total: -1.00 -73.65 385.25 4.23 -69.43 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.75 Total: 15.94 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 6.46 Total: 14.96 kcal Atomic # 7 Polarization: -118.15 SS G_CDS: -4.95 Total: -123.10 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.06 Total: -24.54 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -73.65 4.23 -69.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021638369.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.861 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds