Wall clock time and date at job start Wed Apr 1 2020 02:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38605 * 120.32451 * 2 1 4 4 N 1.31501 * 120.89686 * 180.02562 * 3 2 1 5 5 C 1.32744 * 121.64703 * 0.02562 * 4 3 2 6 6 C 1.48160 * 119.72191 * 179.97438 * 5 4 3 7 7 O 1.21523 * 120.00075 * 253.95697 * 6 5 4 8 8 N 1.34775 * 120.00363 * 73.96283 * 6 5 4 9 9 C 1.47072 * 120.83974 * 5.08722 * 8 6 5 10 10 C 1.53554 * 108.81068 * 126.54356 * 9 8 6 11 11 C 1.53145 * 109.54480 * 54.23323 * 10 9 8 12 12 C 1.52818 * 109.26542 * 299.01806 * 11 10 9 13 13 H 1.08995 * 109.47656 * 301.98972 * 12 11 10 14 14 C 1.53071 * 110.34269 * 181.44925 * 12 11 10 15 15 N 1.47070 * 108.33298 * 184.56182 * 14 12 11 16 16 C 1.36943 * 120.46879 * 233.29003 * 15 14 12 17 17 H 1.07995 * 119.99863 * 151.05860 * 16 15 14 18 18 C 1.38813 * 119.99795 * 331.06050 * 16 15 14 19 19 N 1.31622 * 120.00176 * 344.02009 * 18 16 15 20 20 Si 1.86797 * 119.99789 * 164.01714 * 18 16 15 21 21 H 1.48501 * 109.47066 * 90.00394 * 20 18 16 22 22 H 1.48497 * 109.47378 * 209.99912 * 20 18 16 23 23 H 1.48501 * 109.47368 * 330.00322 * 20 18 16 24 24 C 1.46856 * 119.06277 * 53.31361 * 15 14 12 25 25 C 1.53313 * 109.10450 * 307.35169 * 24 15 14 26 26 C 1.46713 * 120.85005 * 185.36463 * 8 6 5 27 27 H 1.09000 * 109.52551 * 114.76799 * 26 8 6 28 28 C 1.39270 * 120.55019 * 359.97438 * 5 4 3 29 29 C 1.50704 * 120.46407 * 179.97438 * 28 5 4 30 30 C 1.38584 * 120.32362 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46917 * 270.00046 * 1 2 3 32 32 H 1.09005 * 109.46888 * 29.99146 * 1 2 3 33 33 H 1.08996 * 109.47401 * 149.99454 * 1 2 3 34 34 H 1.07993 * 119.55091 * 0.02852 * 3 2 1 35 35 H 1.09004 * 109.54094 * 246.46588 * 9 8 6 36 36 H 1.08999 * 109.54341 * 6.72574 * 9 8 6 37 37 H 1.09006 * 109.59385 * 294.14718 * 10 9 8 38 38 H 1.09000 * 109.35124 * 174.17360 * 10 9 8 39 39 H 1.08998 * 109.50962 * 179.08543 * 11 10 9 40 40 H 1.09003 * 109.53868 * 58.97447 * 11 10 9 41 41 H 1.09001 * 109.68970 * 304.26985 * 14 12 11 42 42 H 1.08994 * 109.68996 * 64.81039 * 14 12 11 43 43 H 0.97000 * 119.99958 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.53295 * 67.23892 * 24 15 14 45 45 H 1.09009 * 109.53475 * 187.38672 * 24 15 14 46 46 H 1.09000 * 109.56197 * 294.26481 * 25 24 15 47 47 H 1.09007 * 109.56108 * 173.94279 * 25 24 15 48 48 H 1.08996 * 109.47159 * 268.41326 * 29 28 5 49 49 H 1.09003 * 109.47428 * 28.41581 * 29 28 5 50 50 H 1.09004 * 109.47152 * 148.41619 * 29 28 5 51 51 H 1.08005 * 120.75291 * 0.25156 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2095 -0.0005 5 6 4.2295 0.0865 -0.0015 6 6 5.7097 0.1511 -0.0026 7 8 6.3286 -0.1126 -1.0147 8 7 6.3698 0.5021 1.1187 9 6 5.6485 0.7168 2.3823 10 6 6.2919 -0.1512 3.4734 11 6 7.7932 0.1432 3.5433 12 6 8.4372 -0.1992 2.2004 13 1 8.2517 -1.2472 1.9651 14 6 9.9461 0.0522 2.2544 15 7 10.5029 -0.1848 0.9139 16 6 11.5535 -1.0458 0.7406 17 1 11.6676 -1.5776 -0.1924 18 6 12.4718 -1.2351 1.7642 19 7 12.5292 -0.3801 2.7633 20 14 13.6261 -2.7032 1.7238 21 1 14.8737 -2.3324 1.0088 22 1 13.9548 -3.1129 3.1127 23 1 12.9675 -3.8314 1.0176 24 6 9.9165 0.5155 -0.2361 25 6 8.4016 0.2796 -0.2481 26 6 7.8254 0.6856 1.1086 27 1 8.0622 1.7302 1.3108 28 6 3.5922 -1.1518 -0.0016 29 6 4.3976 -2.4256 -0.0033 30 6 2.2067 -1.1962 -0.0005 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8901 -0.5137 33 1 -0.3634 -0.8899 -0.5139 34 1 1.6648 2.1305 0.0005 35 1 5.7115 1.7679 2.6641 36 1 4.6033 0.4334 2.2582 37 1 6.1393 -1.2049 3.2396 38 1 5.8321 0.0776 4.4348 39 1 8.2465 -0.4613 4.3288 40 1 7.9477 1.1998 3.7621 41 1 10.1362 1.0828 2.5541 42 1 10.4066 -0.6291 2.9697 43 1 13.1707 -0.5126 3.4788 44 1 10.1184 1.5835 -0.1542 45 1 10.3535 0.1317 -1.1581 46 1 8.1980 -0.7756 -0.4300 47 1 7.9447 0.8817 -1.0336 48 1 4.5666 -2.7472 -1.0310 49 1 5.3564 -2.2500 0.4847 50 1 3.8525 -3.2009 0.5351 51 1 1.6843 -2.1416 -0.0050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021639771.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:08 Heat of formation + Delta-G solvation = 26.569921 kcal Electronic energy + Delta-G solvation = -31612.907557 eV Core-core repulsion = 27705.668987 eV Total energy + Delta-G solvation = -3907.238570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.12248 -39.81499 -37.58136 -35.78626 -33.98882 -33.88355 -32.79401 -32.49168 -30.21572 -29.29778 -27.92911 -27.68082 -25.50755 -25.00421 -23.64598 -22.56759 -22.39596 -21.63846 -20.36288 -19.43364 -19.28794 -17.19990 -17.14203 -16.67240 -15.99821 -15.23945 -14.89526 -14.84138 -14.65762 -14.52503 -14.21932 -13.98125 -13.63193 -13.50695 -13.40675 -13.34795 -13.12452 -12.90706 -12.72847 -12.67022 -12.59431 -12.33970 -12.14956 -12.11176 -11.83354 -11.48528 -10.99713 -10.94518 -10.82163 -10.73713 -10.60174 -10.25575 -10.06299 -9.97372 -9.86974 -9.81582 -9.67947 -9.41804 -9.07552 -8.82840 -8.40024 -8.21017 -6.56872 -5.73692 -3.16057 0.64780 0.98005 2.62370 3.03258 3.40492 3.43237 3.47217 3.50435 4.13224 4.34210 4.41008 4.54235 4.60235 4.66380 4.84818 4.89819 5.06730 5.08202 5.15400 5.16514 5.26494 5.40615 5.43880 5.44843 5.45736 5.50886 5.54234 5.60763 5.71520 5.77702 5.86060 5.87347 5.93793 5.95352 6.01323 6.17214 6.28279 6.33656 6.39750 6.43220 6.48344 6.60190 6.68599 6.84162 6.99061 7.05111 7.24183 7.38102 7.60298 7.63639 7.68309 7.85753 8.30541 8.51816 9.27298 9.90730 10.47718 11.34722 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.002915 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.169101 B = 9602.228809 C = 9828.450045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.127 4.127 3 C 0.092 3.908 4 N -0.451 5.451 5 C 0.091 3.909 6 C 0.576 3.424 7 O -0.514 6.514 8 N -0.592 5.592 9 C 0.115 3.885 10 C -0.132 4.132 11 C -0.112 4.112 12 C -0.120 4.120 13 H 0.067 0.933 14 C 0.184 3.816 15 N -0.593 5.593 16 C -0.248 4.248 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.905 5.905 20 Si 0.900 3.100 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.139 3.861 25 C -0.116 4.116 26 C 0.157 3.843 27 H 0.068 0.932 28 C -0.093 4.093 29 C -0.116 4.116 30 C -0.081 4.081 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.159 0.841 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.019 0.981 42 H 0.089 0.911 43 H 0.253 0.747 44 H 0.014 0.986 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.182 0.500 0.162 25.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.129 4.129 3 C -0.067 4.067 4 N -0.160 5.160 5 C -0.048 4.048 6 C 0.361 3.639 7 O -0.390 6.390 8 N -0.324 5.324 9 C -0.008 4.008 10 C -0.170 4.170 11 C -0.150 4.150 12 C -0.141 4.141 13 H 0.085 0.915 14 C 0.057 3.943 15 N -0.316 5.316 16 C -0.378 4.378 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.550 5.550 20 Si 0.730 3.270 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.012 3.988 25 C -0.156 4.156 26 C 0.056 3.944 27 H 0.086 0.914 28 C -0.096 4.096 29 C -0.173 4.173 30 C -0.107 4.107 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.176 0.824 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.107 0.893 43 H 0.063 0.937 44 H 0.032 0.968 45 H 0.074 0.926 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.091 0.909 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.220 1.158 -0.259 24.249 hybrid contribution -0.002 -1.402 0.169 1.412 sum -24.221 -0.244 -0.090 24.223 Atomic orbital electron populations 1.20742 0.89940 1.03303 1.02757 1.21088 0.97711 0.94076 0.99988 1.22698 0.89359 0.97625 0.97031 1.67675 1.08306 1.29743 1.10249 1.21182 0.94944 0.89152 0.99548 1.17893 0.85088 0.77186 0.83738 1.90884 1.66372 1.48412 1.33284 1.48214 1.08681 1.66908 1.08603 1.21724 0.95243 1.00066 0.83753 1.21999 0.97251 0.99988 0.97789 1.21491 0.93496 1.01630 0.98396 1.22277 0.99841 0.99336 0.92661 0.91482 1.20748 0.85889 0.99294 0.88369 1.44097 1.35815 1.49872 1.01783 1.19196 1.01245 1.16135 1.01177 0.91803 1.25049 0.97279 0.98445 0.98928 1.70018 1.37602 1.34716 1.12644 0.86325 0.80937 0.82917 0.76788 1.21426 1.21629 1.20527 1.21129 0.91223 0.94695 0.91734 1.22471 0.96382 1.02651 0.94053 1.21405 0.75854 0.98975 0.98152 0.91417 1.20846 0.94490 0.95886 0.98372 1.20817 0.99662 0.93274 1.03533 1.21341 0.92812 0.98494 0.98041 0.90663 0.90972 0.91196 0.82365 0.91232 0.91132 0.91788 0.91188 0.91477 0.91991 0.96271 0.89267 0.93730 0.96800 0.92596 0.91223 0.90942 0.89948 0.90844 0.90856 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 10.03 36.00 0.36 -0.17 16 2 C -0.13 -1.05 5.91 -104.36 -0.62 -1.67 16 3 C 0.09 0.92 10.86 -17.56 -0.19 0.73 16 4 N -0.45 -6.10 10.23 -9.80 -0.10 -6.20 16 5 C 0.09 1.30 4.52 -83.01 -0.38 0.93 16 6 C 0.58 9.75 5.70 -12.19 -0.07 9.68 16 7 O -0.51 -10.20 12.65 5.35 0.07 -10.14 16 8 N -0.59 -9.52 2.96 -166.04 -0.49 -10.02 16 9 C 0.12 1.50 6.35 -3.44 -0.02 1.48 16 10 C -0.13 -1.64 6.08 -26.37 -0.16 -1.80 16 11 C -0.11 -1.71 5.24 -26.75 -0.14 -1.85 16 12 C -0.12 -2.28 2.21 -90.54 -0.20 -2.48 16 13 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 14 C 0.18 4.34 4.61 -3.69 -0.02 4.32 16 15 N -0.59 -15.27 3.00 -172.26 -0.52 -15.79 16 16 C -0.25 -6.95 9.56 -15.06 -0.14 -7.10 16 17 H 0.06 1.78 7.88 -52.49 -0.41 1.37 16 18 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 19 N -0.90 -26.31 11.19 55.49 0.62 -25.69 16 20 Si 0.90 21.97 29.58 -169.99 -5.03 16.94 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 C 0.14 3.15 6.50 -3.69 -0.02 3.13 16 25 C -0.12 -2.37 3.79 -26.62 -0.10 -2.47 16 26 C 0.16 2.90 2.63 -67.73 -0.18 2.72 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 C -0.09 -1.10 5.93 -104.09 -0.62 -1.72 16 29 C -0.12 -1.28 9.66 36.01 0.35 -0.93 16 30 C -0.08 -0.73 9.54 -39.31 -0.38 -1.11 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 33 H 0.07 0.29 8.09 -51.93 -0.42 -0.13 16 34 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.86 6.35 -51.93 -0.33 0.53 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.09 2.35 6.11 -51.93 -0.32 2.03 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 1.26 7.93 -51.92 -0.41 0.85 16 46 H 0.07 1.54 7.15 -51.93 -0.37 1.17 16 47 H 0.07 1.49 6.45 -51.92 -0.33 1.16 16 48 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.07 0.97 7.03 -51.93 -0.36 0.60 16 50 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 51 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 392.16 15.07 5.91 5.91 Total: -1.00 -32.50 392.16 -10.58 -43.08 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.44 Total: 0.26 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.61 Total: 1.63 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: -0.49 Total: -57.69 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.07 Total: -10.14 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.50 -10.58 -43.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021639771.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.653 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds