Wall clock time and date at job start Wed Apr 1 2020 02:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38605 * 120.32451 * 2 1 4 4 N 1.31501 * 120.89686 * 180.02562 * 3 2 1 5 5 C 1.32744 * 121.64703 * 0.02562 * 4 3 2 6 6 C 1.48160 * 119.72191 * 179.97438 * 5 4 3 7 7 O 1.21523 * 120.00075 * 253.95697 * 6 5 4 8 8 N 1.34775 * 120.00363 * 73.96283 * 6 5 4 9 9 C 1.47072 * 120.83974 * 5.08722 * 8 6 5 10 10 C 1.53554 * 108.81068 * 126.54356 * 9 8 6 11 11 C 1.53145 * 109.54480 * 54.23323 * 10 9 8 12 12 C 1.52818 * 109.26542 * 299.01806 * 11 10 9 13 13 H 1.08995 * 109.47656 * 301.98972 * 12 11 10 14 14 C 1.53071 * 110.34269 * 181.44925 * 12 11 10 15 15 N 1.47070 * 108.33298 * 184.56182 * 14 12 11 16 16 C 1.36943 * 120.46879 * 233.29003 * 15 14 12 17 17 H 1.07995 * 119.99863 * 151.05860 * 16 15 14 18 18 C 1.38813 * 119.99795 * 331.06050 * 16 15 14 19 19 N 1.31622 * 120.00176 * 344.02009 * 18 16 15 20 20 Si 1.86797 * 119.99789 * 164.01714 * 18 16 15 21 21 H 1.48501 * 109.47066 * 90.00394 * 20 18 16 22 22 H 1.48497 * 109.47378 * 209.99912 * 20 18 16 23 23 H 1.48501 * 109.47368 * 330.00322 * 20 18 16 24 24 C 1.46856 * 119.06277 * 53.31361 * 15 14 12 25 25 C 1.53313 * 109.10450 * 307.35169 * 24 15 14 26 26 C 1.46713 * 120.85005 * 185.36463 * 8 6 5 27 27 H 1.09000 * 109.52551 * 114.76799 * 26 8 6 28 28 C 1.39270 * 120.55019 * 359.97438 * 5 4 3 29 29 C 1.50704 * 120.46407 * 179.97438 * 28 5 4 30 30 C 1.38584 * 120.32362 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46917 * 270.00046 * 1 2 3 32 32 H 1.09005 * 109.46888 * 29.99146 * 1 2 3 33 33 H 1.08996 * 109.47401 * 149.99454 * 1 2 3 34 34 H 1.07993 * 119.55091 * 0.02852 * 3 2 1 35 35 H 1.09004 * 109.54094 * 246.46588 * 9 8 6 36 36 H 1.08999 * 109.54341 * 6.72574 * 9 8 6 37 37 H 1.09006 * 109.59385 * 294.14718 * 10 9 8 38 38 H 1.09000 * 109.35124 * 174.17360 * 10 9 8 39 39 H 1.08998 * 109.50962 * 179.08543 * 11 10 9 40 40 H 1.09003 * 109.53868 * 58.97447 * 11 10 9 41 41 H 1.09001 * 109.68970 * 304.26985 * 14 12 11 42 42 H 1.08994 * 109.68996 * 64.81039 * 14 12 11 43 43 H 0.97000 * 119.99958 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.53295 * 67.23892 * 24 15 14 45 45 H 1.09009 * 109.53475 * 187.38672 * 24 15 14 46 46 H 1.09000 * 109.56197 * 294.26481 * 25 24 15 47 47 H 1.09007 * 109.56108 * 173.94279 * 25 24 15 48 48 H 1.08996 * 109.47159 * 268.41326 * 29 28 5 49 49 H 1.09003 * 109.47428 * 28.41581 * 29 28 5 50 50 H 1.09004 * 109.47152 * 148.41619 * 29 28 5 51 51 H 1.08005 * 120.75291 * 0.25156 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5217 1.2095 -0.0005 5 6 4.2295 0.0865 -0.0015 6 6 5.7097 0.1511 -0.0026 7 8 6.3286 -0.1126 -1.0147 8 7 6.3698 0.5021 1.1187 9 6 5.6485 0.7168 2.3823 10 6 6.2919 -0.1512 3.4734 11 6 7.7932 0.1432 3.5433 12 6 8.4372 -0.1992 2.2004 13 1 8.2517 -1.2472 1.9651 14 6 9.9461 0.0522 2.2544 15 7 10.5029 -0.1848 0.9139 16 6 11.5535 -1.0458 0.7406 17 1 11.6676 -1.5776 -0.1924 18 6 12.4718 -1.2351 1.7642 19 7 12.5292 -0.3801 2.7633 20 14 13.6261 -2.7032 1.7238 21 1 14.8737 -2.3324 1.0088 22 1 13.9548 -3.1129 3.1127 23 1 12.9675 -3.8314 1.0176 24 6 9.9165 0.5155 -0.2361 25 6 8.4016 0.2796 -0.2481 26 6 7.8254 0.6856 1.1086 27 1 8.0622 1.7302 1.3108 28 6 3.5922 -1.1518 -0.0016 29 6 4.3976 -2.4256 -0.0033 30 6 2.2067 -1.1962 -0.0005 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8901 -0.5137 33 1 -0.3634 -0.8899 -0.5139 34 1 1.6648 2.1305 0.0005 35 1 5.7115 1.7679 2.6641 36 1 4.6033 0.4334 2.2582 37 1 6.1393 -1.2049 3.2396 38 1 5.8321 0.0776 4.4348 39 1 8.2465 -0.4613 4.3288 40 1 7.9477 1.1998 3.7621 41 1 10.1362 1.0828 2.5541 42 1 10.4066 -0.6291 2.9697 43 1 13.1707 -0.5126 3.4788 44 1 10.1184 1.5835 -0.1542 45 1 10.3535 0.1317 -1.1581 46 1 8.1980 -0.7756 -0.4300 47 1 7.9447 0.8817 -1.0336 48 1 4.5666 -2.7472 -1.0310 49 1 5.3564 -2.2500 0.4847 50 1 3.8525 -3.2009 0.5351 51 1 1.6843 -2.1416 -0.0050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021639771.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:07 Heat of formation + Delta-G solvation = 7.643831 kcal Electronic energy + Delta-G solvation = -31613.728254 eV Core-core repulsion = 27705.668987 eV Total energy + Delta-G solvation = -3908.059267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.22011 -40.94468 -39.04897 -37.39800 -34.91925 -34.72983 -34.31604 -34.05676 -31.96868 -30.92213 -28.80737 -28.45573 -27.27627 -26.32037 -24.71649 -24.10712 -23.91131 -22.58845 -21.60568 -21.18892 -20.52554 -18.73034 -18.31564 -18.01768 -17.37092 -16.76490 -16.25390 -16.22161 -15.65104 -15.52713 -15.44443 -15.31826 -15.23087 -15.06539 -14.59198 -14.16437 -14.07725 -14.06620 -13.92116 -13.82240 -13.62561 -13.44324 -13.34185 -13.25696 -13.20498 -12.86451 -12.73341 -12.54090 -12.47805 -12.24262 -12.12010 -12.09262 -11.77689 -11.63099 -11.52385 -11.10084 -10.77164 -10.60428 -10.56880 -10.26827 -9.76583 -9.60380 -8.65862 -7.88721 -5.35570 -0.17203 0.23003 1.39934 1.44807 1.45454 1.56207 1.81685 2.49525 2.61452 3.12989 3.24886 3.55940 3.59552 3.72537 3.77872 3.83006 3.90256 3.92231 3.98048 4.04045 4.21032 4.22784 4.27362 4.40578 4.42889 4.51184 4.56744 4.60139 4.62334 4.71522 4.80982 4.83558 4.84927 4.89151 4.90602 4.98522 5.02613 5.05630 5.11713 5.13494 5.21704 5.24766 5.27855 5.34188 5.39772 5.49058 5.56306 5.64027 5.67588 5.73828 6.32147 6.38750 6.79994 7.02446 7.13371 7.82413 8.35310 9.17173 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.002915 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.169101 B = 9602.228809 C = 9828.450045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.110 4.110 3 C 0.085 3.915 4 N -0.479 5.479 5 C 0.062 3.938 6 C 0.572 3.428 7 O -0.558 6.558 8 N -0.592 5.592 9 C 0.115 3.885 10 C -0.121 4.121 11 C -0.108 4.108 12 C -0.105 4.105 13 H 0.047 0.953 14 C 0.193 3.807 15 N -0.611 5.611 16 C -0.268 4.268 17 H 0.058 0.942 18 C -0.045 4.045 19 N -0.931 5.931 20 Si 0.967 3.033 21 H -0.284 1.284 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.138 3.862 25 C -0.095 4.095 26 C 0.164 3.836 27 H 0.067 0.933 28 C -0.101 4.101 29 C -0.112 4.112 30 C -0.078 4.078 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.186 0.814 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.002 0.998 42 H 0.060 0.940 43 H 0.252 0.748 44 H 0.014 0.986 45 H 0.049 0.951 46 H 0.047 0.953 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.043 0.957 50 H 0.104 0.896 51 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.063 -0.003 1.172 29.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.112 4.112 3 C -0.075 4.075 4 N -0.189 5.189 5 C -0.076 4.076 6 C 0.359 3.641 7 O -0.436 6.436 8 N -0.323 5.323 9 C -0.007 4.007 10 C -0.159 4.159 11 C -0.146 4.146 12 C -0.126 4.126 13 H 0.065 0.935 14 C 0.067 3.933 15 N -0.335 5.335 16 C -0.398 4.398 17 H 0.076 0.924 18 C -0.241 4.241 19 N -0.577 5.577 20 Si 0.795 3.205 21 H -0.210 1.210 22 H -0.212 1.212 23 H -0.200 1.200 24 C 0.012 3.988 25 C -0.134 4.134 26 C 0.061 3.939 27 H 0.085 0.915 28 C -0.104 4.104 29 C -0.169 4.169 30 C -0.104 4.104 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.203 0.797 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.020 0.980 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.032 0.968 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.062 0.938 50 H 0.122 0.878 51 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -28.133 0.662 0.765 28.151 hybrid contribution 1.096 -1.190 -0.198 1.630 sum -27.037 -0.528 0.567 27.048 Atomic orbital electron populations 1.20851 0.86934 1.04650 1.04101 1.21507 0.99655 0.93057 0.96969 1.23246 0.88300 0.99640 0.96310 1.67572 1.10115 1.29760 1.11405 1.20709 0.93019 0.90609 1.03282 1.18427 0.86687 0.75915 0.83039 1.90835 1.67838 1.50241 1.34669 1.48220 1.07488 1.66625 1.09990 1.21932 0.95647 1.00909 0.82178 1.21947 0.94812 0.99741 0.99399 1.21462 0.95477 1.02052 0.95614 1.21994 0.96879 0.98239 0.95472 0.93481 1.20560 0.88659 0.97267 0.86812 1.44359 1.35910 1.50121 1.03076 1.19447 1.02201 1.16797 1.01326 0.92428 1.25786 0.98851 1.00894 0.98578 1.70160 1.38283 1.36116 1.13100 0.85294 0.78795 0.79673 0.76783 1.21037 1.21230 1.19963 1.21199 0.92724 0.94246 0.90653 1.22168 0.94527 1.01159 0.95520 1.21096 0.77855 0.98503 0.96403 0.91478 1.20955 0.95894 0.94871 0.98634 1.20789 0.98717 0.94212 1.03209 1.21719 0.91500 1.00346 0.96787 0.89065 0.89719 0.89867 0.79715 0.90095 0.89672 0.92069 0.87513 0.91448 0.91263 0.97968 0.92204 0.93879 0.96821 0.93287 0.93376 0.91154 0.90655 0.93770 0.87778 0.81113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.03 71.24 0.71 0.20 16 2 C -0.11 -1.40 5.91 -19.69 -0.12 -1.51 16 3 C 0.08 1.45 10.86 84.83 0.92 2.37 16 4 N -0.48 -12.34 10.23 -184.92 -1.89 -14.23 16 5 C 0.06 1.73 4.52 41.89 0.19 1.92 16 6 C 0.57 19.92 5.70 86.88 0.49 20.42 16 7 O -0.56 -23.36 12.65 -3.79 -0.05 -23.41 16 8 N -0.59 -19.27 2.96 -797.53 -2.36 -21.63 16 9 C 0.12 2.81 6.35 86.46 0.55 3.36 16 10 C -0.12 -2.76 6.08 30.83 0.19 -2.57 16 11 C -0.11 -3.24 5.24 30.58 0.16 -3.08 16 12 C -0.10 -4.13 2.21 -10.74 -0.02 -4.15 16 13 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 14 C 0.19 9.59 4.61 86.29 0.40 9.99 16 15 N -0.61 -33.11 3.00 -698.89 -2.09 -35.21 16 16 C -0.27 -15.64 9.56 84.03 0.80 -14.83 16 17 H 0.06 3.36 7.88 -2.91 -0.02 3.33 16 18 C -0.05 -2.62 4.93 84.86 0.42 -2.20 16 19 N -0.93 -55.75 11.19 21.65 0.24 -55.51 16 20 Si 0.97 46.19 29.58 68.60 2.03 48.22 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 23 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 24 C 0.14 6.62 6.50 86.42 0.56 7.19 16 25 C -0.09 -4.09 3.79 30.66 0.12 -3.97 16 26 C 0.16 6.25 2.63 45.01 0.12 6.37 16 27 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 28 C -0.10 -2.24 5.93 -19.52 -0.12 -2.35 16 29 C -0.11 -2.41 9.66 71.24 0.69 -1.73 16 30 C -0.08 -1.14 9.54 22.45 0.21 -0.93 16 31 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.08 0.25 8.09 -2.38 -0.02 0.23 16 33 H 0.08 0.24 8.09 -2.39 -0.02 0.22 16 34 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.08 1.89 6.35 -2.39 -0.02 1.88 16 37 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.06 3.31 6.11 -2.39 -0.01 3.30 16 43 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 44 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.05 2.36 7.93 -2.38 -0.02 2.34 16 46 H 0.05 2.28 7.15 -2.39 -0.02 2.26 16 47 H 0.07 3.07 6.45 -2.38 -0.02 3.06 16 48 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.04 1.20 7.03 -2.39 -0.02 1.18 16 50 H 0.10 1.50 8.11 -2.39 -0.02 1.48 16 51 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -75.33 392.16 3.06 -72.27 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.91 Total: 15.02 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 6.28 Total: 14.48 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -6.11 Total: -126.58 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -75.33 3.06 -72.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021639771.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.910 kcal (2) G-P(sol) polarization free energy of solvation -75.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds