Wall clock time and date at job start Wed Apr 1 2020 01:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31893 * 119.61993 * 2 1 4 4 C 1.31852 * 121.72488 * 179.97438 * 3 2 1 5 5 C 1.38228 * 120.76526 * 0.02562 * 4 3 2 6 6 C 1.38625 * 119.16208 * 359.73079 * 5 4 3 7 7 C 1.38184 * 119.61673 * 179.97438 * 2 1 3 8 8 C 1.50698 * 120.41533 * 359.97109 * 7 2 1 9 9 C 1.50700 * 109.46797 * 85.00958 * 8 7 2 10 10 O 1.21284 * 120.00253 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99980 * 180.02562 * 9 8 7 12 12 C 1.46947 * 120.84547 * 359.96913 * 11 9 8 13 13 C 1.53142 * 109.02509 * 234.05207 * 12 11 9 14 14 C 1.51538 * 109.01212 * 305.90580 * 13 12 11 15 15 C 1.52852 * 110.19221 * 61.23700 * 14 13 12 16 16 H 1.08992 * 109.25404 * 56.67829 * 15 14 13 17 17 C 1.52775 * 110.21189 * 176.72921 * 15 14 13 18 18 N 1.46886 * 109.19453 * 66.55021 * 17 15 14 19 19 C 1.36940 * 120.77598 * 233.32514 * 18 17 15 20 20 H 1.07992 * 120.00388 * 151.96212 * 19 18 17 21 21 C 1.38816 * 119.99822 * 331.95951 * 19 18 17 22 22 N 1.31618 * 120.00223 * 343.15301 * 21 19 18 23 23 Si 1.86801 * 120.00000 * 163.14264 * 21 19 18 24 24 H 1.48502 * 109.46663 * 60.00560 * 23 21 19 25 25 H 1.48498 * 109.47342 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47324 * 300.00817 * 23 21 19 27 27 C 1.46978 * 118.45326 * 53.35110 * 18 17 15 28 28 C 1.53093 * 108.61637 * 305.67508 * 27 18 17 29 29 C 1.47307 * 120.84406 * 179.97438 * 11 9 8 30 30 H 1.09004 * 110.67410 * 4.54436 * 29 11 9 31 31 H 1.08997 * 109.47251 * 270.02087 * 1 2 3 32 32 H 1.09003 * 109.47273 * 30.02149 * 1 2 3 33 33 H 1.08998 * 109.47196 * 150.02080 * 1 2 3 34 34 H 1.07992 * 119.61491 * 180.02562 * 4 3 2 35 35 H 1.08002 * 120.41909 * 180.02562 * 5 4 3 36 36 H 1.07994 * 120.79123 * 180.27819 * 6 5 4 37 37 H 1.08997 * 109.47972 * 325.00600 * 8 7 2 38 38 H 1.09002 * 109.46986 * 205.00353 * 8 7 2 39 39 H 1.09005 * 109.54071 * 353.91250 * 12 11 9 40 40 H 1.08997 * 109.54344 * 114.17959 * 12 11 9 41 41 H 1.08996 * 109.47271 * 65.91695 * 13 12 11 42 42 H 1.08995 * 109.47047 * 185.92124 * 13 12 11 43 43 H 1.08998 * 109.75165 * 300.58523 * 14 13 12 44 44 H 1.09004 * 108.38233 * 181.02811 * 14 13 12 45 45 H 1.08991 * 109.51737 * 186.47045 * 17 15 14 46 46 H 1.09003 * 109.51082 * 306.57981 * 17 15 14 47 47 H 0.96998 * 120.00262 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.61375 * 65.41622 * 27 18 17 49 49 H 1.09003 * 109.61348 * 185.94167 * 27 18 17 50 50 H 1.08999 * 109.45454 * 175.37932 * 28 27 18 51 51 H 1.08997 * 109.45073 * 295.33834 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1950 0.0005 5 6 4.2266 0.0340 0.0005 6 6 3.5765 -1.1903 0.0057 7 6 2.1898 -1.2013 0.0005 8 6 1.4371 -2.5068 0.0018 9 6 1.0785 -2.8812 -1.4133 10 8 1.4019 -2.1587 -2.3322 11 7 0.3975 -4.0183 -1.6575 12 6 -0.0041 -4.9070 -0.5583 13 6 0.5092 -6.3208 -0.8464 14 6 0.0273 -6.7511 -2.2171 15 6 0.5788 -5.8116 -3.2893 16 1 1.6668 -5.7953 -3.2277 17 6 0.1601 -6.2918 -4.6779 18 7 -1.2968 -6.1636 -4.8142 19 6 -2.0615 -7.2330 -5.1975 20 1 -3.0911 -7.3025 -4.8790 21 6 -1.5133 -8.2278 -5.9955 22 7 -0.3959 -8.0024 -6.6536 23 14 -2.3611 -9.8864 -6.1351 24 1 -3.7281 -9.6988 -6.6841 25 1 -1.5801 -10.7670 -7.0406 26 1 -2.4490 -10.5122 -4.7912 27 6 -1.9148 -4.8606 -4.5303 28 6 -1.4914 -4.4140 -3.1285 29 6 0.0368 -4.4019 -3.0333 30 1 0.4620 -3.7015 -3.7521 31 1 -0.3633 0.0004 1.0276 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8901 -0.5135 34 1 3.9752 2.1528 0.0009 35 1 5.3057 0.0802 0.0013 36 1 4.1366 -2.1136 0.0103 37 1 0.5265 -2.4008 0.5914 38 1 2.0626 -3.2865 0.4364 39 1 0.4248 -4.5468 0.3769 40 1 -1.0911 -4.9224 -0.4804 41 1 1.5989 -6.3236 -0.8223 42 1 0.1272 -7.0070 -0.0906 43 1 -1.0622 -6.7363 -2.2459 44 1 0.3826 -7.7646 -2.4039 45 1 0.6518 -5.6837 -5.4370 46 1 0.4481 -7.3355 -4.8044 47 1 -0.0126 -8.6977 -7.2110 48 1 -1.5787 -4.1286 -5.2646 49 1 -3.0000 -4.9534 -4.5725 50 1 -1.8749 -3.4122 -2.9354 51 1 -1.8954 -5.1061 -2.3896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021668495.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:19 Heat of formation + Delta-G solvation = 17.737667 kcal Electronic energy + Delta-G solvation = -31310.314644 eV Core-core repulsion = 27402.693078 eV Total energy + Delta-G solvation = -3907.621565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.87164 -40.05306 -38.07835 -35.57758 -33.97436 -33.12319 -32.68765 -32.52061 -30.37148 -29.66710 -28.70453 -27.34978 -25.61767 -24.80851 -23.09403 -22.45541 -22.10372 -21.84522 -21.25304 -19.10909 -17.86781 -17.16324 -16.98819 -16.78655 -16.47670 -15.73226 -15.13021 -15.06824 -14.89727 -14.49396 -14.36611 -13.97300 -13.62984 -13.53553 -13.33905 -13.25189 -13.07883 -12.74123 -12.71654 -12.58771 -12.39555 -12.33695 -12.24897 -12.13535 -11.56769 -11.55809 -11.12143 -10.97666 -10.74095 -10.65466 -10.46706 -10.13570 -10.09681 -10.02261 -9.97377 -9.71423 -9.60162 -9.58129 -9.40066 -8.88683 -8.51471 -8.26690 -6.68756 -5.80720 -3.23154 0.94653 1.15458 2.72084 3.10710 3.36215 3.42544 3.42804 3.65865 4.16428 4.40937 4.47394 4.58230 4.62307 4.72764 4.81433 4.92677 5.09875 5.14596 5.18211 5.19975 5.36263 5.38412 5.41686 5.43818 5.46346 5.47088 5.50618 5.56076 5.65810 5.77617 5.87284 5.91067 6.01023 6.04697 6.07542 6.09082 6.20006 6.30574 6.41580 6.45746 6.52394 6.57232 6.66469 6.76183 6.90068 6.94241 7.02113 7.29961 7.57207 7.65752 7.77371 7.86938 8.31040 8.42688 9.19013 9.82229 10.39962 11.27936 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.002611 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.804729 B =10721.447474 C =10830.050480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.145 3.855 3 N -0.486 5.486 4 C 0.099 3.901 5 C -0.179 4.179 6 C -0.062 4.062 7 C -0.113 4.113 8 C -0.100 4.100 9 C 0.513 3.487 10 O -0.537 6.537 11 N -0.605 5.605 12 C 0.106 3.894 13 C -0.134 4.134 14 C -0.105 4.105 15 C -0.114 4.114 16 H 0.055 0.945 17 C 0.179 3.821 18 N -0.588 5.588 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.147 3.853 28 C -0.140 4.140 29 C 0.155 3.845 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.019 0.981 46 H 0.091 0.909 47 H 0.254 0.746 48 H 0.019 0.981 49 H 0.056 0.944 50 H 0.050 0.950 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.651 10.552 18.433 21.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.007 3.993 3 N -0.195 5.195 4 C -0.058 4.058 5 C -0.199 4.199 6 C -0.088 4.088 7 C -0.115 4.115 8 C -0.140 4.140 9 C 0.300 3.700 10 O -0.414 6.414 11 N -0.338 5.338 12 C -0.017 4.017 13 C -0.172 4.172 14 C -0.143 4.143 15 C -0.135 4.135 16 H 0.074 0.926 17 C 0.052 3.948 18 N -0.311 5.311 19 C -0.380 4.380 20 H 0.082 0.918 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.019 3.981 28 C -0.180 4.180 29 C 0.053 3.947 30 H 0.112 0.888 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.037 0.963 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.037 0.963 49 H 0.075 0.925 50 H 0.068 0.932 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.421 11.599 17.806 21.931 hybrid contribution 0.325 -1.790 -0.105 1.822 sum 5.746 9.809 17.701 21.037 Atomic orbital electron populations 1.20749 0.89083 1.03917 1.02633 1.21052 0.96843 0.87697 0.93705 1.67514 1.10089 1.29097 1.12817 1.22693 0.89499 0.98392 0.95251 1.22057 1.01349 0.93381 1.03126 1.21434 0.93588 0.98590 0.95147 1.20118 0.94215 0.94980 1.02195 1.20685 1.01805 0.95408 0.96123 1.20336 0.78069 0.80973 0.90574 1.90726 1.53675 1.50846 1.46116 1.48568 1.55186 1.21354 1.08701 1.21739 1.00268 0.90724 0.89004 1.21707 1.00886 0.95401 0.99214 1.21158 1.02217 0.98862 0.92061 1.22032 0.98503 0.93409 0.99551 0.92609 1.20677 0.83811 1.01721 0.88580 1.44016 1.02725 1.05690 1.78625 1.19094 0.95768 0.98405 1.24769 0.91751 1.25035 0.98097 0.99879 0.96476 1.70013 1.21653 1.32729 1.30253 0.86402 0.78889 0.84212 0.77451 1.20911 1.21691 1.21066 1.20865 0.96866 0.88474 0.91845 1.22402 0.94642 0.99981 1.01012 1.21384 0.95271 0.96739 0.81302 0.88783 0.90413 0.90258 0.90786 0.82888 0.84870 0.85019 0.87768 0.88032 0.90636 0.91131 0.92179 0.91216 0.90366 0.92328 0.96301 0.89058 0.93557 0.96277 0.92509 0.93156 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.39 36.00 0.34 -0.78 16 2 C 0.14 1.82 6.78 -82.59 -0.56 1.26 16 3 N -0.49 -6.34 10.27 -9.48 -0.10 -6.44 16 4 C 0.10 1.06 11.18 -17.55 -0.20 0.86 16 5 C -0.18 -1.74 10.11 -39.44 -0.40 -2.14 16 6 C -0.06 -0.66 9.84 -39.28 -0.39 -1.04 16 7 C -0.11 -1.32 4.39 -104.48 -0.46 -1.77 16 8 C -0.10 -1.00 3.52 -29.04 -0.10 -1.10 16 9 C 0.51 7.31 6.93 -10.98 -0.08 7.24 16 10 O -0.54 -9.99 15.51 5.55 0.09 -9.90 16 11 N -0.61 -8.44 2.64 -164.87 -0.44 -8.88 16 12 C 0.11 1.14 5.83 -3.72 -0.02 1.12 16 13 C -0.13 -1.59 6.06 -27.40 -0.17 -1.76 16 14 C -0.11 -1.71 4.70 -27.55 -0.13 -1.84 16 15 C -0.11 -2.08 2.53 -90.72 -0.23 -2.31 16 16 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 17 C 0.18 4.11 4.70 -3.95 -0.02 4.09 16 18 N -0.59 -14.04 2.59 -172.63 -0.45 -14.49 16 19 C -0.25 -6.59 9.60 -15.06 -0.14 -6.73 16 20 H 0.06 1.66 7.88 -52.49 -0.41 1.25 16 21 C 0.00 0.10 4.92 -17.43 -0.09 0.02 16 22 N -0.90 -25.64 11.19 55.49 0.62 -25.02 16 23 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.15 3.00 6.51 -3.73 -0.02 2.98 16 28 C -0.14 -2.39 4.97 -26.62 -0.13 -2.52 16 29 C 0.15 2.66 2.69 -67.33 -0.18 2.48 16 30 H 0.09 1.87 7.10 -51.93 -0.37 1.51 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.80 6.15 -51.93 -0.32 0.48 16 34 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.10 0.82 6.80 -51.93 -0.35 0.47 16 38 H 0.10 0.80 7.63 -51.93 -0.40 0.40 16 39 H 0.08 0.58 5.96 -51.93 -0.31 0.27 16 40 H 0.07 0.75 7.18 -51.93 -0.37 0.37 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 1.39 6.05 -51.93 -0.31 1.08 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 50 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.07 1.09 5.19 -51.93 -0.27 0.82 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -32.28 387.47 -10.49 -42.77 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.05 Total: 1.95 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -2.97 Total: -1.96 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.36 Total: -54.83 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.28 -10.49 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021668495.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.512 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds