Wall clock time and date at job start Wed Apr 1 2020 01:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31893 * 119.61993 * 2 1 4 4 C 1.31852 * 121.72488 * 179.97438 * 3 2 1 5 5 C 1.38228 * 120.76526 * 0.02562 * 4 3 2 6 6 C 1.38625 * 119.16208 * 359.73079 * 5 4 3 7 7 C 1.38184 * 119.61673 * 179.97438 * 2 1 3 8 8 C 1.50698 * 120.41533 * 359.97109 * 7 2 1 9 9 C 1.50700 * 109.46797 * 85.00958 * 8 7 2 10 10 O 1.21284 * 120.00253 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99980 * 180.02562 * 9 8 7 12 12 C 1.46947 * 120.84547 * 359.96913 * 11 9 8 13 13 C 1.53142 * 109.02509 * 234.05207 * 12 11 9 14 14 C 1.51538 * 109.01212 * 305.90580 * 13 12 11 15 15 C 1.52852 * 110.19221 * 61.23700 * 14 13 12 16 16 H 1.08992 * 109.25404 * 56.67829 * 15 14 13 17 17 C 1.52775 * 110.21189 * 176.72921 * 15 14 13 18 18 N 1.46886 * 109.19453 * 66.55021 * 17 15 14 19 19 C 1.36940 * 120.77598 * 233.32514 * 18 17 15 20 20 H 1.07992 * 120.00388 * 151.96212 * 19 18 17 21 21 C 1.38816 * 119.99822 * 331.95951 * 19 18 17 22 22 N 1.31618 * 120.00223 * 343.15301 * 21 19 18 23 23 Si 1.86801 * 120.00000 * 163.14264 * 21 19 18 24 24 H 1.48502 * 109.46663 * 60.00560 * 23 21 19 25 25 H 1.48498 * 109.47342 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47324 * 300.00817 * 23 21 19 27 27 C 1.46978 * 118.45326 * 53.35110 * 18 17 15 28 28 C 1.53093 * 108.61637 * 305.67508 * 27 18 17 29 29 C 1.47307 * 120.84406 * 179.97438 * 11 9 8 30 30 H 1.09004 * 110.67410 * 4.54436 * 29 11 9 31 31 H 1.08997 * 109.47251 * 270.02087 * 1 2 3 32 32 H 1.09003 * 109.47273 * 30.02149 * 1 2 3 33 33 H 1.08998 * 109.47196 * 150.02080 * 1 2 3 34 34 H 1.07992 * 119.61491 * 180.02562 * 4 3 2 35 35 H 1.08002 * 120.41909 * 180.02562 * 5 4 3 36 36 H 1.07994 * 120.79123 * 180.27819 * 6 5 4 37 37 H 1.08997 * 109.47972 * 325.00600 * 8 7 2 38 38 H 1.09002 * 109.46986 * 205.00353 * 8 7 2 39 39 H 1.09005 * 109.54071 * 353.91250 * 12 11 9 40 40 H 1.08997 * 109.54344 * 114.17959 * 12 11 9 41 41 H 1.08996 * 109.47271 * 65.91695 * 13 12 11 42 42 H 1.08995 * 109.47047 * 185.92124 * 13 12 11 43 43 H 1.08998 * 109.75165 * 300.58523 * 14 13 12 44 44 H 1.09004 * 108.38233 * 181.02811 * 14 13 12 45 45 H 1.08991 * 109.51737 * 186.47045 * 17 15 14 46 46 H 1.09003 * 109.51082 * 306.57981 * 17 15 14 47 47 H 0.96998 * 120.00262 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.61375 * 65.41622 * 27 18 17 49 49 H 1.09003 * 109.61348 * 185.94167 * 27 18 17 50 50 H 1.08999 * 109.45454 * 175.37932 * 28 27 18 51 51 H 1.08997 * 109.45073 * 295.33834 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4764 1.1950 0.0005 5 6 4.2266 0.0340 0.0005 6 6 3.5765 -1.1903 0.0057 7 6 2.1898 -1.2013 0.0005 8 6 1.4371 -2.5068 0.0018 9 6 1.0785 -2.8812 -1.4133 10 8 1.4019 -2.1587 -2.3322 11 7 0.3975 -4.0183 -1.6575 12 6 -0.0041 -4.9070 -0.5583 13 6 0.5092 -6.3208 -0.8464 14 6 0.0273 -6.7511 -2.2171 15 6 0.5788 -5.8116 -3.2893 16 1 1.6668 -5.7953 -3.2277 17 6 0.1601 -6.2918 -4.6779 18 7 -1.2968 -6.1636 -4.8142 19 6 -2.0615 -7.2330 -5.1975 20 1 -3.0911 -7.3025 -4.8790 21 6 -1.5133 -8.2278 -5.9955 22 7 -0.3959 -8.0024 -6.6536 23 14 -2.3611 -9.8864 -6.1351 24 1 -3.7281 -9.6988 -6.6841 25 1 -1.5801 -10.7670 -7.0406 26 1 -2.4490 -10.5122 -4.7912 27 6 -1.9148 -4.8606 -4.5303 28 6 -1.4914 -4.4140 -3.1285 29 6 0.0368 -4.4019 -3.0333 30 1 0.4620 -3.7015 -3.7521 31 1 -0.3633 0.0004 1.0276 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3633 -0.8901 -0.5135 34 1 3.9752 2.1528 0.0009 35 1 5.3057 0.0802 0.0013 36 1 4.1366 -2.1136 0.0103 37 1 0.5265 -2.4008 0.5914 38 1 2.0626 -3.2865 0.4364 39 1 0.4248 -4.5468 0.3769 40 1 -1.0911 -4.9224 -0.4804 41 1 1.5989 -6.3236 -0.8223 42 1 0.1272 -7.0070 -0.0906 43 1 -1.0622 -6.7363 -2.2459 44 1 0.3826 -7.7646 -2.4039 45 1 0.6518 -5.6837 -5.4370 46 1 0.4481 -7.3355 -4.8044 47 1 -0.0126 -8.6977 -7.2110 48 1 -1.5787 -4.1286 -5.2646 49 1 -3.0000 -4.9534 -4.5725 50 1 -1.8749 -3.4122 -2.9354 51 1 -1.8954 -5.1061 -2.3896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021668495.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:18 Heat of formation + Delta-G solvation = -0.770696 kcal Electronic energy + Delta-G solvation = -31311.117226 eV Core-core repulsion = 27402.693078 eV Total energy + Delta-G solvation = -3908.424148 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.88878 -41.08209 -39.39686 -37.08404 -34.90959 -34.21790 -33.96057 -33.87793 -31.93274 -31.18885 -29.67229 -28.20568 -27.23762 -26.18209 -24.32591 -23.53236 -23.50157 -22.89735 -22.59750 -20.35616 -19.37912 -18.49980 -18.12139 -17.78878 -17.32707 -16.96383 -16.84736 -16.24985 -15.92778 -15.74552 -15.52068 -15.25929 -15.07737 -14.98430 -14.49879 -14.26162 -14.16617 -13.98607 -13.87453 -13.71948 -13.57020 -13.33444 -13.30208 -13.15039 -12.99270 -12.89281 -12.58252 -12.50160 -12.33074 -12.16486 -11.97086 -11.82372 -11.73478 -11.43802 -11.32962 -11.06084 -10.90270 -10.54685 -10.51232 -10.38548 -9.69169 -9.50349 -8.68212 -7.86058 -5.31812 0.15821 0.37297 1.48398 1.49868 1.56834 1.66507 2.03011 2.52219 2.84763 3.29809 3.42281 3.58295 3.63293 3.68643 3.87700 3.94295 3.97796 3.99982 4.05687 4.12598 4.15377 4.25830 4.39903 4.47383 4.50433 4.54503 4.61868 4.64061 4.67110 4.70497 4.73289 4.74831 4.82128 4.91674 4.97956 5.02324 5.06111 5.14583 5.15285 5.18070 5.25196 5.25953 5.32155 5.33143 5.47424 5.60970 5.64038 5.68835 5.72647 5.82986 6.39151 6.54835 7.07341 7.14801 7.23362 7.84933 8.39238 9.20822 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024262 B = 0.002611 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.804729 B =10721.447474 C =10830.050480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.120 3.880 3 N -0.517 5.517 4 C 0.084 3.916 5 C -0.180 4.180 6 C -0.073 4.073 7 C -0.128 4.128 8 C -0.089 4.089 9 C 0.512 3.488 10 O -0.589 6.589 11 N -0.603 5.603 12 C 0.101 3.899 13 C -0.126 4.126 14 C -0.099 4.099 15 C -0.103 4.103 16 H 0.052 0.948 17 C 0.189 3.811 18 N -0.600 5.600 19 C -0.255 4.255 20 H 0.071 0.929 21 C -0.050 4.050 22 N -0.939 5.939 23 Si 0.966 3.034 24 H -0.277 1.277 25 H -0.299 1.299 26 H -0.274 1.274 27 C 0.142 3.858 28 C -0.123 4.123 29 C 0.163 3.837 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.176 0.824 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.121 0.879 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.100 0.900 43 H 0.064 0.936 44 H 0.041 0.959 45 H -0.021 1.021 46 H 0.060 0.940 47 H 0.249 0.751 48 H 0.002 0.998 49 H 0.063 0.937 50 H 0.066 0.934 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.354 10.237 22.356 25.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.017 4.017 3 N -0.227 5.227 4 C -0.072 4.072 5 C -0.199 4.199 6 C -0.099 4.099 7 C -0.130 4.130 8 C -0.128 4.128 9 C 0.301 3.699 10 O -0.469 6.469 11 N -0.334 5.334 12 C -0.020 4.020 13 C -0.164 4.164 14 C -0.136 4.136 15 C -0.124 4.124 16 H 0.071 0.929 17 C 0.062 3.938 18 N -0.324 5.324 19 C -0.385 4.385 20 H 0.088 0.912 21 C -0.246 4.246 22 N -0.585 5.585 23 Si 0.794 3.206 24 H -0.202 1.202 25 H -0.225 1.225 26 H -0.199 1.199 27 C 0.016 3.984 28 C -0.162 4.162 29 C 0.059 3.941 30 H 0.077 0.923 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.193 0.807 35 H 0.179 0.821 36 H 0.170 0.830 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.139 0.861 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.118 0.882 43 H 0.083 0.917 44 H 0.059 0.941 45 H -0.003 1.003 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.020 0.980 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.100 11.289 21.786 25.062 hybrid contribution 0.459 -1.603 -1.406 2.181 sum 5.558 9.686 20.379 23.239 Atomic orbital electron populations 1.20757 0.88300 1.03081 1.03924 1.21411 0.97762 0.88164 0.94337 1.67510 1.11357 1.29852 1.13995 1.23190 0.89151 1.00018 0.94877 1.22412 1.02830 0.92829 1.01861 1.21833 0.93650 0.99806 0.94616 1.20333 0.94890 0.95315 1.02467 1.20731 1.03554 0.95488 0.93069 1.21108 0.76775 0.80036 0.91939 1.90715 1.55558 1.52430 1.48191 1.48527 1.55058 1.22048 1.07787 1.22080 1.01343 0.89283 0.89326 1.21664 1.01341 0.96768 0.96598 1.21062 1.01113 0.97336 0.94121 1.21784 0.98354 0.94950 0.97336 0.92916 1.20407 0.83512 0.99138 0.90721 1.44218 1.02836 1.06587 1.78719 1.19450 0.96163 0.98958 1.23905 0.91151 1.25800 0.98939 1.03202 0.96616 1.70195 1.23424 1.33410 1.31473 0.85366 0.77769 0.79963 0.77509 1.20244 1.22525 1.19938 1.20998 0.97049 0.86632 0.93762 1.22185 0.94421 1.01023 0.98595 1.20918 0.95106 0.94818 0.83228 0.92343 0.87984 0.91454 0.91179 0.80677 0.82064 0.83011 0.84842 0.84779 0.86070 0.90031 0.91581 0.88183 0.91732 0.94061 1.00293 0.92174 0.94242 0.98046 0.91871 0.91495 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.03 9.39 71.23 0.67 -1.36 16 2 C 0.12 2.87 6.78 42.53 0.29 3.16 16 3 N -0.52 -13.15 10.27 -183.89 -1.89 -15.04 16 4 C 0.08 1.70 11.18 84.69 0.95 2.64 16 5 C -0.18 -3.12 10.11 22.36 0.23 -2.89 16 6 C -0.07 -1.38 9.84 22.47 0.22 -1.15 16 7 C -0.13 -2.68 4.39 -19.77 -0.09 -2.76 16 8 C -0.09 -1.43 3.52 29.10 0.10 -1.32 16 9 C 0.51 13.45 6.93 87.66 0.61 14.06 16 10 O -0.59 -21.86 15.51 -3.04 -0.05 -21.91 16 11 N -0.60 -15.28 2.64 -793.93 -2.10 -17.38 16 12 C 0.10 1.68 5.83 86.34 0.50 2.18 16 13 C -0.13 -2.47 6.06 30.16 0.18 -2.29 16 14 C -0.10 -3.07 4.70 30.07 0.14 -2.93 16 15 C -0.10 -3.85 2.53 -10.86 -0.03 -3.88 16 16 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 17 C 0.19 9.22 4.70 86.23 0.41 9.63 16 18 N -0.60 -29.66 2.59 -700.07 -1.81 -31.47 16 19 C -0.25 -13.62 9.60 84.03 0.81 -12.82 16 20 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 21 C -0.05 -2.78 4.92 84.86 0.42 -2.36 16 22 N -0.94 -55.82 11.19 21.65 0.24 -55.58 16 23 Si 0.97 44.13 29.59 68.60 2.03 46.16 16 24 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 C 0.14 5.92 6.51 86.32 0.56 6.49 16 28 C -0.12 -4.05 4.97 30.67 0.15 -3.90 16 29 C 0.16 5.60 2.69 44.94 0.12 5.72 16 30 H 0.06 2.44 7.10 -2.38 -0.02 2.43 16 31 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.39 6.15 -2.39 -0.01 1.38 16 34 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 36 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.13 1.39 6.80 -2.39 -0.02 1.37 16 38 H 0.13 1.32 7.63 -2.39 -0.02 1.30 16 39 H 0.12 1.01 5.96 -2.38 -0.01 1.00 16 40 H 0.08 1.27 7.18 -2.39 -0.02 1.25 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 2.19 6.05 -2.39 -0.01 2.18 16 44 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 45 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 46 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 47 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 48 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 49 H 0.06 2.52 7.94 -2.39 -0.02 2.50 16 50 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 51 H 0.08 2.47 5.19 -2.39 -0.01 2.46 16 Total: -1.00 -76.28 387.47 3.59 -72.70 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.92 Total: 16.32 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: 6.24 Total: 6.20 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -5.56 Total: -119.47 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.05 Total: -21.91 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -76.28 3.59 -72.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021668495.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.927 kcal (2) G-P(sol) polarization free energy of solvation -76.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds