Wall clock time and date at job start Wed Apr 1 2020 01:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31884 * 119.62174 * 2 1 4 4 C 1.31853 * 121.72655 * 180.02562 * 3 2 1 5 5 C 1.38229 * 120.76365 * 359.97438 * 4 3 2 6 6 C 1.38627 * 119.16272 * 359.72639 * 5 4 3 7 7 C 1.38188 * 119.61344 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.41965 * 359.97438 * 7 2 1 9 9 C 1.50695 * 109.47166 * 84.99883 * 8 7 2 10 10 O 1.21279 * 119.99945 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99900 * 180.02562 * 9 8 7 12 12 C 1.47057 * 120.84681 * 354.40156 * 11 9 8 13 13 C 1.53121 * 109.05260 * 233.44490 * 12 11 9 14 14 C 1.53144 * 109.59189 * 306.02179 * 13 12 11 15 15 C 1.52758 * 109.30083 * 60.85904 * 14 13 12 16 16 H 1.08995 * 109.47850 * 57.97263 * 15 14 13 17 17 C 1.53063 * 110.35009 * 178.52767 * 15 14 13 18 18 N 1.47074 * 108.33105 * 175.42593 * 17 15 14 19 19 C 1.36941 * 120.46749 * 126.70139 * 18 17 15 20 20 H 1.08004 * 119.99294 * 214.74101 * 19 18 17 21 21 C 1.38810 * 120.00243 * 34.74191 * 19 18 17 22 22 N 1.31615 * 120.00022 * 5.38108 * 21 19 18 23 23 Si 1.86803 * 119.99918 * 185.38490 * 21 19 18 24 24 H 1.48499 * 109.47235 * 89.99723 * 23 21 19 25 25 H 1.48501 * 109.46856 * 210.00075 * 23 21 19 26 26 H 1.48496 * 109.46723 * 329.99804 * 23 21 19 27 27 C 1.46859 * 119.05659 * 306.67984 * 18 17 15 28 28 C 1.53312 * 109.10424 * 52.65604 * 27 18 17 29 29 C 1.46720 * 120.84348 * 174.42453 * 11 9 8 30 30 H 1.09000 * 109.52901 * 245.40734 * 29 11 9 31 31 H 1.09001 * 109.47368 * 270.02939 * 1 2 3 32 32 H 1.09002 * 109.46589 * 30.02612 * 1 2 3 33 33 H 1.08994 * 109.47603 * 150.02124 * 1 2 3 34 34 H 1.08000 * 119.62112 * 180.02562 * 4 3 2 35 35 H 1.08002 * 120.41966 * 180.02562 * 5 4 3 36 36 H 1.07990 * 120.79249 * 180.27432 * 6 5 4 37 37 H 1.09002 * 109.46787 * 324.99694 * 8 7 2 38 38 H 1.09001 * 109.47049 * 205.00227 * 8 7 2 39 39 H 1.09009 * 109.54225 * 113.57302 * 12 11 9 40 40 H 1.08999 * 109.54169 * 353.31823 * 12 11 9 41 41 H 1.09002 * 109.44681 * 66.04642 * 13 12 11 42 42 H 1.09003 * 109.45369 * 185.98674 * 13 12 11 43 43 H 1.09006 * 109.50503 * 180.76440 * 14 13 12 44 44 H 1.08998 * 109.50478 * 300.88787 * 14 13 12 45 45 H 1.09000 * 109.69124 * 55.71740 * 17 15 14 46 46 H 1.08999 * 109.69030 * 295.13103 * 17 15 14 47 47 H 0.96997 * 119.99800 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.53053 * 292.76305 * 27 18 17 49 49 H 1.08997 * 109.59418 * 172.57806 * 27 18 17 50 50 H 1.08998 * 109.55968 * 186.05709 * 28 27 18 51 51 H 1.08994 * 109.56195 * 65.73219 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1949 -0.0005 5 6 4.2267 0.0339 -0.0005 6 6 3.5765 -1.1905 0.0058 7 6 2.1898 -1.2014 0.0005 8 6 1.4371 -2.5069 0.0017 9 6 1.0783 -2.8812 -1.4133 10 8 1.4016 -2.1587 -2.3321 11 7 0.3973 -4.0183 -1.6575 12 6 0.1014 -4.9675 -0.5740 13 6 0.5973 -6.3585 -0.9788 14 6 0.0021 -6.7407 -2.3371 15 6 0.4563 -5.7308 -3.3895 16 1 1.5453 -5.7108 -3.4279 17 6 -0.0960 -6.1112 -4.7654 18 7 0.2737 -5.0554 -5.7202 19 6 0.9256 -5.3681 -6.8832 20 1 1.6602 -4.6888 -7.2898 21 6 0.6421 -6.5580 -7.5394 22 7 -0.3264 -7.3353 -7.1035 23 14 1.6353 -7.0560 -9.0411 24 1 2.8088 -7.8597 -8.6142 25 1 0.7851 -7.8656 -9.9505 26 1 2.1013 -5.8386 -9.7522 27 6 -0.0666 -3.6611 -5.4088 28 6 0.4640 -3.3149 -4.0127 29 6 -0.0673 -4.3408 -3.0113 30 1 -1.1571 -4.3401 -3.0324 31 1 -0.3634 0.0005 1.0277 32 1 -0.3632 0.8898 -0.5143 33 1 -0.3634 -0.8901 -0.5135 34 1 3.9754 2.1527 -0.0001 35 1 5.3057 0.0800 -0.0005 36 1 4.1366 -2.1138 0.0104 37 1 0.5266 -2.4007 0.5915 38 1 2.0626 -3.2866 0.4363 39 1 -0.9744 -5.0000 -0.4013 40 1 0.6087 -4.6505 0.3372 41 1 1.6850 -6.3499 -1.0487 42 1 0.2877 -7.0867 -0.2291 43 1 0.3452 -7.7366 -2.6176 44 1 -1.0859 -6.7347 -2.2723 45 1 -1.1814 -6.1968 -4.7146 46 1 0.3335 -7.0610 -5.0838 47 1 -0.5242 -8.1670 -7.5619 48 1 -1.1493 -3.5371 -5.4284 49 1 0.3893 -3.0002 -6.1460 50 1 0.1237 -2.3188 -3.7297 51 1 1.5535 -3.3418 -4.0193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021668499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:28 Heat of formation + Delta-G solvation = 27.452083 kcal Electronic energy + Delta-G solvation = -31431.858075 eV Core-core repulsion = 27524.657758 eV Total energy + Delta-G solvation = -3907.200317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.89539 -40.01721 -37.69595 -35.81897 -34.01294 -33.09813 -32.83379 -32.53503 -30.28301 -29.48089 -28.54575 -27.30681 -25.53789 -24.73382 -23.03325 -22.50855 -22.33314 -21.76840 -20.23155 -19.38257 -18.82683 -16.97775 -16.71952 -16.59136 -16.50182 -15.87061 -15.20577 -14.92477 -14.69167 -14.50017 -14.32394 -14.05862 -13.62248 -13.46896 -13.35966 -13.21673 -13.02386 -12.87765 -12.56719 -12.55406 -12.30386 -12.25675 -12.15383 -12.03662 -11.49608 -11.47761 -10.99532 -10.93208 -10.86804 -10.75095 -10.64280 -10.23553 -10.03653 -9.97220 -9.85925 -9.74215 -9.55527 -9.43715 -8.99919 -8.72362 -8.43202 -8.21004 -6.49204 -5.75321 -3.26198 0.97735 1.18707 2.75658 3.12649 3.38800 3.45102 3.47452 3.68561 4.19267 4.43649 4.51237 4.61393 4.62689 4.75224 4.83022 4.87414 5.02172 5.13212 5.18079 5.21709 5.37019 5.40396 5.42555 5.44231 5.48576 5.48821 5.53744 5.62871 5.68391 5.74908 5.92170 5.92977 5.97275 6.04294 6.11800 6.15434 6.26920 6.35873 6.42819 6.47537 6.59077 6.61029 6.68721 6.83635 6.99291 7.05565 7.25018 7.39603 7.65124 7.71244 7.83655 7.89966 8.39289 8.55014 9.27728 9.87760 10.47527 11.32304 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003049 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.449129 B = 9181.822509 C =10089.397277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.145 3.855 3 N -0.486 5.486 4 C 0.099 3.901 5 C -0.179 4.179 6 C -0.061 4.061 7 C -0.112 4.112 8 C -0.102 4.102 9 C 0.512 3.488 10 O -0.519 6.519 11 N -0.608 5.608 12 C 0.107 3.893 13 C -0.133 4.133 14 C -0.112 4.112 15 C -0.121 4.121 16 H 0.065 0.935 17 C 0.184 3.816 18 N -0.594 5.594 19 C -0.251 4.251 20 H 0.062 0.938 21 C 0.006 3.994 22 N -0.907 5.907 23 Si 0.903 3.097 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.278 1.278 27 C 0.138 3.862 28 C -0.113 4.113 29 C 0.158 3.842 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.018 0.982 46 H 0.089 0.911 47 H 0.253 0.747 48 H 0.013 0.987 49 H 0.054 0.946 50 H 0.070 0.930 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.807 7.720 21.046 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.007 3.993 3 N -0.195 5.195 4 C -0.058 4.058 5 C -0.199 4.199 6 C -0.087 4.087 7 C -0.114 4.114 8 C -0.143 4.143 9 C 0.299 3.701 10 O -0.395 6.395 11 N -0.342 5.342 12 C -0.016 4.016 13 C -0.171 4.171 14 C -0.150 4.150 15 C -0.142 4.142 16 H 0.083 0.917 17 C 0.058 3.942 18 N -0.316 5.316 19 C -0.381 4.381 20 H 0.080 0.920 21 C -0.192 4.192 22 N -0.551 5.551 23 Si 0.733 3.267 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.204 1.204 27 C 0.012 3.988 28 C -0.153 4.153 29 C 0.056 3.944 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.036 0.964 46 H 0.107 0.893 47 H 0.063 0.937 48 H 0.031 0.969 49 H 0.072 0.928 50 H 0.089 0.911 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.435 8.752 20.442 22.370 hybrid contribution 1.097 -1.334 -0.730 1.874 sum 3.532 7.419 19.712 21.356 Atomic orbital electron populations 1.20742 0.89127 1.03901 1.02555 1.21038 0.96804 0.87697 0.93772 1.67507 1.10079 1.29108 1.12813 1.22688 0.89500 0.98379 0.95262 1.22057 1.01348 0.93394 1.03074 1.21429 0.93606 0.98563 0.95115 1.20103 0.94180 0.94956 1.02192 1.20743 1.01709 0.95359 0.96464 1.20315 0.78265 0.81117 0.90403 1.90808 1.52240 1.51757 1.44654 1.48334 1.55666 1.20064 1.10114 1.21728 1.00706 0.89646 0.89507 1.21912 1.01161 0.95629 0.98433 1.21473 1.00304 0.99645 0.93585 1.22273 1.00921 0.92888 0.98139 0.91695 1.20768 0.96145 0.93839 0.83440 1.44030 1.67437 1.00577 1.19573 1.19190 1.15018 1.04721 0.99129 0.92041 1.25253 0.96865 0.99263 0.97836 1.69934 1.30524 1.13340 1.41321 0.86274 0.79223 0.78286 0.82887 1.21471 1.21637 1.20383 1.21147 0.96154 0.87533 0.93999 1.22435 1.01560 0.96754 0.94514 1.21336 0.97328 0.96294 0.79419 0.91810 0.90505 0.90274 0.90794 0.82917 0.84904 0.85067 0.87910 0.88232 0.91420 0.90432 0.91819 0.91174 0.91604 0.92100 0.96384 0.89255 0.93656 0.96925 0.92757 0.91126 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.39 36.00 0.34 -0.77 16 2 C 0.14 1.82 6.78 -82.59 -0.56 1.26 16 3 N -0.49 -6.42 10.27 -9.47 -0.10 -6.52 16 4 C 0.10 1.08 11.18 -17.55 -0.20 0.89 16 5 C -0.18 -1.80 10.11 -39.44 -0.40 -2.20 16 6 C -0.06 -0.67 9.84 -39.28 -0.39 -1.05 16 7 C -0.11 -1.31 4.39 -104.48 -0.46 -1.77 16 8 C -0.10 -1.02 3.59 -29.04 -0.10 -1.12 16 9 C 0.51 7.24 6.84 -10.99 -0.08 7.17 16 10 O -0.52 -9.43 11.58 5.56 0.06 -9.36 16 11 N -0.61 -8.42 2.97 -165.33 -0.49 -8.91 16 12 C 0.11 1.08 6.32 -3.68 -0.02 1.05 16 13 C -0.13 -1.46 6.07 -26.59 -0.16 -1.62 16 14 C -0.11 -1.63 5.23 -26.78 -0.14 -1.77 16 15 C -0.12 -2.25 2.21 -90.57 -0.20 -2.45 16 16 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 17 C 0.18 4.34 4.55 -3.70 -0.02 4.32 16 18 N -0.59 -15.29 2.98 -172.26 -0.51 -15.81 16 19 C -0.25 -7.06 9.54 -15.06 -0.14 -7.20 16 20 H 0.06 1.73 7.83 -52.48 -0.41 1.32 16 21 C 0.01 0.18 5.14 -17.43 -0.09 0.09 16 22 N -0.91 -26.22 11.01 55.49 0.61 -25.61 16 23 Si 0.90 21.99 29.56 -169.99 -5.02 16.97 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 C 0.14 3.13 6.50 -3.68 -0.02 3.11 16 28 C -0.11 -2.26 3.79 -26.62 -0.10 -2.36 16 29 C 0.16 2.75 2.64 -67.73 -0.18 2.57 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.79 6.15 -51.93 -0.32 0.47 16 34 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.10 0.79 6.99 -51.93 -0.36 0.43 16 38 H 0.10 0.78 7.39 -51.93 -0.38 0.40 16 39 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.08 0.56 6.00 -51.93 -0.31 0.24 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.09 2.36 6.22 -51.93 -0.32 2.04 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.05 1.24 7.93 -51.93 -0.41 0.83 16 50 H 0.07 1.40 6.46 -51.93 -0.34 1.07 16 51 H 0.07 1.51 7.14 -51.93 -0.37 1.14 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -33.37 387.97 -10.81 -44.18 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.28 Total: 1.08 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.92 Total: -1.86 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.49 Total: -56.85 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.06 Total: -9.36 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.37 -10.81 -44.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021668499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.631 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds