Wall clock time and date at job start Wed Apr 1 2020 01:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31884 * 119.62174 * 2 1 4 4 C 1.31853 * 121.72655 * 180.02562 * 3 2 1 5 5 C 1.38229 * 120.76365 * 359.97438 * 4 3 2 6 6 C 1.38627 * 119.16272 * 359.72639 * 5 4 3 7 7 C 1.38188 * 119.61344 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.41965 * 359.97438 * 7 2 1 9 9 C 1.50695 * 109.47166 * 84.99883 * 8 7 2 10 10 O 1.21279 * 119.99945 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99900 * 180.02562 * 9 8 7 12 12 C 1.47057 * 120.84681 * 354.40156 * 11 9 8 13 13 C 1.53121 * 109.05260 * 233.44490 * 12 11 9 14 14 C 1.53144 * 109.59189 * 306.02179 * 13 12 11 15 15 C 1.52758 * 109.30083 * 60.85904 * 14 13 12 16 16 H 1.08995 * 109.47850 * 57.97263 * 15 14 13 17 17 C 1.53063 * 110.35009 * 178.52767 * 15 14 13 18 18 N 1.47074 * 108.33105 * 175.42593 * 17 15 14 19 19 C 1.36941 * 120.46749 * 126.70139 * 18 17 15 20 20 H 1.08004 * 119.99294 * 214.74101 * 19 18 17 21 21 C 1.38810 * 120.00243 * 34.74191 * 19 18 17 22 22 N 1.31615 * 120.00022 * 5.38108 * 21 19 18 23 23 Si 1.86803 * 119.99918 * 185.38490 * 21 19 18 24 24 H 1.48499 * 109.47235 * 89.99723 * 23 21 19 25 25 H 1.48501 * 109.46856 * 210.00075 * 23 21 19 26 26 H 1.48496 * 109.46723 * 329.99804 * 23 21 19 27 27 C 1.46859 * 119.05659 * 306.67984 * 18 17 15 28 28 C 1.53312 * 109.10424 * 52.65604 * 27 18 17 29 29 C 1.46720 * 120.84348 * 174.42453 * 11 9 8 30 30 H 1.09000 * 109.52901 * 245.40734 * 29 11 9 31 31 H 1.09001 * 109.47368 * 270.02939 * 1 2 3 32 32 H 1.09002 * 109.46589 * 30.02612 * 1 2 3 33 33 H 1.08994 * 109.47603 * 150.02124 * 1 2 3 34 34 H 1.08000 * 119.62112 * 180.02562 * 4 3 2 35 35 H 1.08002 * 120.41966 * 180.02562 * 5 4 3 36 36 H 1.07990 * 120.79249 * 180.27432 * 6 5 4 37 37 H 1.09002 * 109.46787 * 324.99694 * 8 7 2 38 38 H 1.09001 * 109.47049 * 205.00227 * 8 7 2 39 39 H 1.09009 * 109.54225 * 113.57302 * 12 11 9 40 40 H 1.08999 * 109.54169 * 353.31823 * 12 11 9 41 41 H 1.09002 * 109.44681 * 66.04642 * 13 12 11 42 42 H 1.09003 * 109.45369 * 185.98674 * 13 12 11 43 43 H 1.09006 * 109.50503 * 180.76440 * 14 13 12 44 44 H 1.08998 * 109.50478 * 300.88787 * 14 13 12 45 45 H 1.09000 * 109.69124 * 55.71740 * 17 15 14 46 46 H 1.08999 * 109.69030 * 295.13103 * 17 15 14 47 47 H 0.96997 * 119.99800 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.53053 * 292.76305 * 27 18 17 49 49 H 1.08997 * 109.59418 * 172.57806 * 27 18 17 50 50 H 1.08998 * 109.55968 * 186.05709 * 28 27 18 51 51 H 1.08994 * 109.56195 * 65.73219 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1949 -0.0005 5 6 4.2267 0.0339 -0.0005 6 6 3.5765 -1.1905 0.0058 7 6 2.1898 -1.2014 0.0005 8 6 1.4371 -2.5069 0.0017 9 6 1.0783 -2.8812 -1.4133 10 8 1.4016 -2.1587 -2.3321 11 7 0.3973 -4.0183 -1.6575 12 6 0.1014 -4.9675 -0.5740 13 6 0.5973 -6.3585 -0.9788 14 6 0.0021 -6.7407 -2.3371 15 6 0.4563 -5.7308 -3.3895 16 1 1.5453 -5.7108 -3.4279 17 6 -0.0960 -6.1112 -4.7654 18 7 0.2737 -5.0554 -5.7202 19 6 0.9256 -5.3681 -6.8832 20 1 1.6602 -4.6888 -7.2898 21 6 0.6421 -6.5580 -7.5394 22 7 -0.3264 -7.3353 -7.1035 23 14 1.6353 -7.0560 -9.0411 24 1 2.8088 -7.8597 -8.6142 25 1 0.7851 -7.8656 -9.9505 26 1 2.1013 -5.8386 -9.7522 27 6 -0.0666 -3.6611 -5.4088 28 6 0.4640 -3.3149 -4.0127 29 6 -0.0673 -4.3408 -3.0113 30 1 -1.1571 -4.3401 -3.0324 31 1 -0.3634 0.0005 1.0277 32 1 -0.3632 0.8898 -0.5143 33 1 -0.3634 -0.8901 -0.5135 34 1 3.9754 2.1527 -0.0001 35 1 5.3057 0.0800 -0.0005 36 1 4.1366 -2.1138 0.0104 37 1 0.5266 -2.4007 0.5915 38 1 2.0626 -3.2866 0.4363 39 1 -0.9744 -5.0000 -0.4013 40 1 0.6087 -4.6505 0.3372 41 1 1.6850 -6.3499 -1.0487 42 1 0.2877 -7.0867 -0.2291 43 1 0.3452 -7.7366 -2.6176 44 1 -1.0859 -6.7347 -2.2723 45 1 -1.1814 -6.1968 -4.7146 46 1 0.3335 -7.0610 -5.0838 47 1 -0.5242 -8.1670 -7.5619 48 1 -1.1493 -3.5371 -5.4284 49 1 0.3893 -3.0002 -6.1460 50 1 0.1237 -2.3188 -3.7297 51 1 1.5535 -3.3418 -4.0193 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021668499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:27 Heat of formation + Delta-G solvation = 7.694216 kcal Electronic energy + Delta-G solvation = -31432.714840 eV Core-core repulsion = 27524.657758 eV Total energy + Delta-G solvation = -3908.057082 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.93181 -41.02348 -39.06956 -37.31558 -35.06193 -34.26241 -34.08568 -33.87004 -31.96421 -30.91719 -29.60792 -28.19265 -27.20767 -26.06949 -24.36303 -23.86392 -23.49204 -22.75060 -21.52416 -21.10274 -19.89529 -18.73216 -17.79717 -17.66558 -17.35995 -17.01557 -16.77621 -16.35231 -15.72158 -15.57089 -15.48163 -15.43523 -15.17302 -15.05904 -14.44633 -14.27663 -14.07178 -13.96266 -13.86080 -13.67858 -13.50256 -13.32181 -13.23589 -13.13555 -13.01835 -12.79009 -12.72331 -12.55167 -12.26908 -12.16471 -12.05397 -12.02071 -11.71830 -11.57768 -11.42319 -11.03587 -10.71888 -10.59317 -10.37969 -10.14440 -9.66641 -9.44244 -8.56788 -7.89419 -5.45446 0.16923 0.38156 1.42859 1.43515 1.53426 1.71187 2.06677 2.46638 2.85767 3.24615 3.43381 3.61968 3.62699 3.69377 3.88128 3.90608 3.98024 4.01478 4.09695 4.13480 4.17242 4.32133 4.36679 4.48184 4.52544 4.53678 4.62429 4.64679 4.69707 4.73968 4.74240 4.79194 4.84911 4.88842 4.94434 4.97337 5.02124 5.15246 5.16317 5.18566 5.26655 5.32793 5.34340 5.41207 5.46165 5.52993 5.62156 5.71054 5.78740 5.83761 6.40425 6.58905 7.08298 7.14285 7.31451 7.81279 8.35602 9.14659 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.003049 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.449129 B = 9181.822509 C =10089.397277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 N -0.517 5.517 4 C 0.084 3.916 5 C -0.181 4.181 6 C -0.073 4.073 7 C -0.125 4.125 8 C -0.090 4.090 9 C 0.508 3.492 10 O -0.567 6.567 11 N -0.607 5.607 12 C 0.101 3.899 13 C -0.125 4.125 14 C -0.110 4.110 15 C -0.107 4.107 16 H 0.039 0.961 17 C 0.194 3.806 18 N -0.613 5.613 19 C -0.272 4.272 20 H 0.053 0.947 21 C -0.041 4.041 22 N -0.930 5.930 23 Si 0.969 3.031 24 H -0.282 1.282 25 H -0.288 1.288 26 H -0.273 1.273 27 C 0.136 3.864 28 C -0.090 4.090 29 C 0.167 3.833 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.175 0.825 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.057 0.943 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.000 1.000 46 H 0.055 0.945 47 H 0.253 0.747 48 H 0.013 0.987 49 H 0.041 0.959 50 H 0.072 0.928 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 7.234 24.115 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.016 4.016 3 N -0.227 5.227 4 C -0.073 4.073 5 C -0.200 4.200 6 C -0.099 4.099 7 C -0.128 4.128 8 C -0.129 4.129 9 C 0.297 3.703 10 O -0.447 6.447 11 N -0.340 5.340 12 C -0.020 4.020 13 C -0.163 4.163 14 C -0.148 4.148 15 C -0.128 4.128 16 H 0.058 0.942 17 C 0.068 3.932 18 N -0.337 5.337 19 C -0.402 4.402 20 H 0.071 0.929 21 C -0.237 4.237 22 N -0.575 5.575 23 Si 0.796 3.204 24 H -0.208 1.208 25 H -0.214 1.214 26 H -0.198 1.198 27 C 0.010 3.990 28 C -0.129 4.129 29 C 0.063 3.937 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.192 0.808 35 H 0.178 0.822 36 H 0.168 0.832 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.105 0.895 40 H 0.138 0.862 41 H 0.076 0.924 42 H 0.125 0.875 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.018 0.982 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.031 0.969 49 H 0.060 0.940 50 H 0.091 0.909 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.956 8.262 23.565 25.146 hybrid contribution 0.954 -1.131 -1.719 2.268 sum 3.910 7.131 21.846 23.311 Atomic orbital electron populations 1.20751 0.88250 1.03105 1.03869 1.21407 0.97753 0.88112 0.94295 1.67504 1.11281 1.29906 1.13968 1.23169 0.89192 0.99944 0.94955 1.22399 1.02767 0.92904 1.01941 1.21811 0.93748 0.99676 0.94677 1.20320 0.94766 0.95359 1.02334 1.20754 1.03440 0.95318 0.93431 1.21075 0.77056 0.80305 0.91842 1.90788 1.54085 1.53148 1.46655 1.48340 1.55384 1.21010 1.09240 1.22119 1.02606 0.87930 0.89332 1.21890 1.00592 0.97272 0.96571 1.21458 1.00958 0.97762 0.94600 1.21978 0.98932 0.95228 0.96636 0.94213 1.20567 0.94823 0.92022 0.85815 1.44298 1.67618 1.01983 1.19781 1.19415 1.15401 1.05080 1.00352 0.92941 1.25972 0.98040 0.99137 1.00514 1.70093 1.31737 1.13452 1.42266 0.85258 0.77828 0.77895 0.79378 1.20841 1.21354 1.19839 1.21235 0.96057 0.86047 0.95681 1.22119 0.99496 0.97718 0.93584 1.20936 0.97126 0.94297 0.81334 0.91657 0.88059 0.91499 0.91081 0.80772 0.82247 0.83220 0.84918 0.85084 0.89451 0.86237 0.92371 0.87499 0.92483 0.91352 0.98155 0.92667 0.93825 0.96925 0.94021 0.90943 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.01 9.39 71.24 0.67 -1.34 16 2 C 0.12 2.92 6.78 42.54 0.29 3.21 16 3 N -0.52 -13.37 10.27 -183.88 -1.89 -15.26 16 4 C 0.08 1.76 11.18 84.69 0.95 2.70 16 5 C -0.18 -3.30 10.11 22.36 0.23 -3.07 16 6 C -0.07 -1.43 9.84 22.47 0.22 -1.21 16 7 C -0.13 -2.66 4.39 -19.77 -0.09 -2.75 16 8 C -0.09 -1.44 3.59 29.10 0.10 -1.34 16 9 C 0.51 13.29 6.84 87.66 0.60 13.89 16 10 O -0.57 -20.53 11.58 -3.03 -0.04 -20.57 16 11 N -0.61 -15.32 2.97 -795.36 -2.36 -17.68 16 12 C 0.10 1.54 6.32 86.31 0.55 2.08 16 13 C -0.13 -2.24 6.07 30.68 0.19 -2.06 16 14 C -0.11 -3.03 5.23 30.56 0.16 -2.88 16 15 C -0.11 -4.02 2.21 -10.76 -0.02 -4.05 16 16 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 17 C 0.19 9.53 4.55 86.29 0.39 9.92 16 18 N -0.61 -33.16 2.98 -698.91 -2.09 -35.24 16 19 C -0.27 -15.99 9.54 84.03 0.80 -15.19 16 20 H 0.05 3.10 7.83 -2.91 -0.02 3.08 16 21 C -0.04 -2.34 5.14 84.86 0.44 -1.90 16 22 N -0.93 -55.52 11.01 21.65 0.24 -55.29 16 23 Si 0.97 46.23 29.56 68.60 2.03 48.25 16 24 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 26 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 27 C 0.14 6.47 6.50 86.42 0.56 7.03 16 28 C -0.09 -3.71 3.79 30.66 0.12 -3.59 16 29 C 0.17 5.74 2.64 45.00 0.12 5.86 16 30 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.40 6.15 -2.39 -0.01 1.39 16 34 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 35 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 36 H 0.15 2.24 8.06 -2.92 -0.02 2.21 16 37 H 0.13 1.37 6.99 -2.39 -0.02 1.36 16 38 H 0.13 1.32 7.39 -2.39 -0.02 1.30 16 39 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.12 0.90 6.00 -2.39 -0.01 0.89 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 44 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 46 H 0.05 3.07 6.22 -2.39 -0.01 3.06 16 47 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 48 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.04 2.02 7.93 -2.39 -0.02 2.00 16 50 H 0.07 2.97 6.46 -2.39 -0.02 2.95 16 51 H 0.04 1.90 7.14 -2.39 -0.02 1.88 16 Total: -1.00 -78.35 387.97 3.07 -75.27 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.91 Total: 15.19 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 6.26 Total: 5.32 kcal Atomic # 7 Polarization: -117.37 SS G_CDS: -6.10 Total: -123.47 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.04 Total: -20.57 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -78.35 3.07 -75.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021668499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.969 kcal (2) G-P(sol) polarization free energy of solvation -78.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds