Wall clock time and date at job start Wed Apr 1 2020 01:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31889 * 119.61746 * 2 1 4 4 C 1.31854 * 121.72555 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.76282 * 0.27576 * 4 3 2 6 6 C 1.38627 * 119.16306 * 359.47788 * 5 4 3 7 7 C 1.38183 * 119.61745 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.41727 * 0.02562 * 7 2 1 9 9 C 1.50698 * 109.47335 * 85.00140 * 8 7 2 10 10 O 1.21287 * 119.99761 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00385 * 180.02562 * 9 8 7 12 12 C 1.46949 * 120.84381 * 359.71873 * 11 9 8 13 13 C 1.53608 * 108.77183 * 125.93260 * 12 11 9 14 14 C 1.53114 * 109.40984 * 54.30767 * 13 12 11 15 15 C 1.52862 * 109.34065 * 299.21830 * 14 13 12 16 16 H 1.08998 * 109.25295 * 302.48858 * 15 14 13 17 17 C 1.52777 * 109.56427 * 182.83277 * 15 14 13 18 18 N 1.46891 * 109.18871 * 293.08338 * 17 15 14 19 19 C 1.36934 * 120.77517 * 126.67284 * 18 17 15 20 20 H 1.08001 * 119.99877 * 332.29755 * 19 18 17 21 21 C 1.38813 * 120.00038 * 152.30132 * 19 18 17 22 22 N 1.31621 * 120.00129 * 342.52266 * 21 19 18 23 23 Si 1.86805 * 120.00190 * 162.52906 * 21 19 18 24 24 H 1.48494 * 109.47437 * 94.34967 * 23 21 19 25 25 H 1.48500 * 109.46937 * 214.35591 * 23 21 19 26 26 H 1.48507 * 109.46612 * 334.34972 * 23 21 19 27 27 C 1.46984 * 118.45165 * 306.65240 * 18 17 15 28 28 C 1.51470 * 108.80177 * 53.88868 * 27 18 17 29 29 C 1.47307 * 120.84574 * 179.97438 * 11 9 8 30 30 H 1.08990 * 110.07714 * 355.09362 * 29 11 9 31 31 H 1.08995 * 109.47124 * 90.00050 * 1 2 3 32 32 H 1.09004 * 109.47027 * 210.00156 * 1 2 3 33 33 H 1.08996 * 109.46873 * 329.99864 * 1 2 3 34 34 H 1.08000 * 119.62018 * 179.97438 * 4 3 2 35 35 H 1.08002 * 120.41888 * 179.69550 * 5 4 3 36 36 H 1.07997 * 120.79371 * 180.21975 * 6 5 4 37 37 H 1.08999 * 109.46967 * 204.99914 * 8 7 2 38 38 H 1.08996 * 109.47065 * 324.99549 * 8 7 2 39 39 H 1.09002 * 109.54635 * 245.84564 * 12 11 9 40 40 H 1.09005 * 109.54189 * 6.11423 * 12 11 9 41 41 H 1.08998 * 109.61847 * 294.25536 * 13 12 11 42 42 H 1.08999 * 109.39680 * 174.22060 * 13 12 11 43 43 H 1.08992 * 109.49769 * 179.25495 * 14 13 12 44 44 H 1.09002 * 109.49245 * 59.17519 * 14 13 12 45 45 H 1.08995 * 109.51707 * 52.99534 * 17 15 14 46 46 H 1.09005 * 109.51727 * 173.11292 * 17 15 14 47 47 H 0.96998 * 119.99929 * 180.02562 * 22 21 19 48 48 H 1.08992 * 109.61304 * 174.05229 * 27 18 17 49 49 H 1.09002 * 109.60555 * 294.39436 * 27 18 17 50 50 H 1.08994 * 109.65817 * 184.62018 * 28 27 18 51 51 H 1.09004 * 108.36884 * 65.21413 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4765 1.1951 0.0005 5 6 4.2267 0.0341 -0.0047 6 6 3.5766 -1.1903 0.0006 7 6 2.1899 -1.2013 -0.0005 8 6 1.4372 -2.5068 -0.0017 9 6 1.0796 -2.8793 -1.4175 10 8 1.4036 -2.1555 -2.3352 11 7 0.3988 -4.0161 -1.6638 12 6 0.0013 -4.9090 -0.5666 13 6 -1.5129 -5.1530 -0.6516 14 6 -1.8674 -5.6689 -2.0490 15 6 -1.4748 -4.6209 -3.0902 16 1 -1.9837 -3.6835 -2.8662 17 6 -1.8903 -5.1000 -4.4801 18 7 -1.0884 -6.2752 -4.8455 19 6 -1.6911 -7.4373 -5.2473 20 1 -2.6839 -7.6795 -4.8981 21 6 -1.0258 -8.3041 -6.1035 22 7 0.0085 -7.8788 -6.7975 23 14 -1.5986 -10.0743 -6.2707 24 1 -2.5247 -10.1879 -7.4259 25 1 -0.4239 -10.9561 -6.4894 26 1 -2.3024 -10.4862 -5.0296 27 6 0.3761 -6.1746 -4.7702 28 6 0.7623 -5.7042 -3.3831 29 6 0.0391 -4.3978 -3.0403 30 1 0.3236 -3.6070 -3.7344 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 3.9753 2.1529 0.0001 35 1 5.3057 0.0803 -0.0092 36 1 4.1368 -2.1137 0.0003 37 1 2.0625 -3.2871 0.4323 38 1 0.5263 -2.4015 0.5875 39 1 0.5321 -5.8568 -0.6572 40 1 0.2442 -4.4434 0.3887 41 1 -2.0450 -4.2207 -0.4627 42 1 -1.8026 -5.8940 0.0935 43 1 -2.9398 -5.8551 -2.1068 44 1 -1.3261 -6.5950 -2.2430 45 1 -2.9467 -5.3683 -4.4721 46 1 -1.7222 -4.3037 -5.2052 47 1 0.4731 -8.4845 -7.3960 48 1 0.8204 -7.1500 -4.9677 49 1 0.7316 -5.4546 -5.5072 50 1 1.8397 -5.5460 -3.3364 51 1 0.4775 -6.4753 -2.6672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021668500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:32 Heat of formation + Delta-G solvation = 18.998452 kcal Electronic energy + Delta-G solvation = -31285.633851 eV Core-core repulsion = 27378.066957 eV Total energy + Delta-G solvation = -3907.566894 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.85685 -40.04591 -38.08750 -35.57833 -33.99079 -33.12254 -32.86931 -32.28195 -30.28155 -29.80309 -28.77368 -27.36634 -25.60902 -24.81125 -23.08686 -22.46998 -22.10867 -21.85920 -21.30176 -19.10106 -17.84802 -17.17917 -17.03465 -16.70799 -16.50156 -15.80524 -15.20786 -14.94841 -14.73844 -14.61330 -14.43766 -13.92460 -13.72094 -13.49039 -13.38183 -13.25126 -13.19644 -12.84208 -12.69783 -12.61759 -12.39422 -12.31948 -12.26489 -12.09665 -11.50673 -11.43993 -11.19734 -10.89221 -10.78560 -10.66081 -10.53108 -10.24059 -10.12191 -9.99036 -9.94883 -9.73616 -9.59374 -9.57169 -9.40528 -8.89138 -8.54437 -8.25090 -6.69302 -5.80691 -3.22417 0.95334 1.15691 2.72706 3.10519 3.35326 3.42943 3.44326 3.66935 4.15720 4.41081 4.47446 4.57207 4.63286 4.68699 4.81898 4.88499 5.04996 5.09896 5.13692 5.18503 5.35378 5.36915 5.40945 5.44258 5.44929 5.45982 5.53423 5.56658 5.62988 5.70971 5.91106 5.92686 6.00034 6.01126 6.06324 6.09395 6.18015 6.29531 6.35797 6.44647 6.52446 6.57807 6.63096 6.80446 6.81643 6.91713 6.95424 7.33431 7.57922 7.66810 7.77756 7.87171 8.31402 8.42480 9.18687 9.82468 10.39900 11.27998 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022282 B = 0.002665 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.324132 B =10505.158856 C =10929.084519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.145 3.855 3 N -0.486 5.486 4 C 0.099 3.901 5 C -0.180 4.180 6 C -0.061 4.061 7 C -0.114 4.114 8 C -0.101 4.101 9 C 0.515 3.485 10 O -0.537 6.537 11 N -0.605 5.605 12 C 0.105 3.895 13 C -0.133 4.133 14 C -0.108 4.108 15 C -0.108 4.108 16 H 0.058 0.942 17 C 0.151 3.849 18 N -0.588 5.588 19 C -0.250 4.250 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.900 3.100 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.172 3.828 28 C -0.145 4.145 29 C 0.156 3.844 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.018 0.982 47 H 0.254 0.746 48 H 0.091 0.909 49 H 0.017 0.983 50 H 0.048 0.952 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 10.913 18.874 22.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.007 3.993 3 N -0.195 5.195 4 C -0.058 4.058 5 C -0.199 4.199 6 C -0.087 4.087 7 C -0.116 4.116 8 C -0.141 4.141 9 C 0.302 3.698 10 O -0.414 6.414 11 N -0.338 5.338 12 C -0.018 4.018 13 C -0.171 4.171 14 C -0.145 4.145 15 C -0.129 4.129 16 H 0.076 0.924 17 C 0.024 3.976 18 N -0.310 5.310 19 C -0.379 4.379 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.046 3.954 28 C -0.185 4.185 29 C 0.054 3.946 30 H 0.112 0.888 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.036 0.964 47 H 0.064 0.936 48 H 0.110 0.890 49 H 0.035 0.965 50 H 0.067 0.933 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.617 11.978 18.254 22.131 hybrid contribution 0.417 -1.795 -0.169 1.851 sum 4.034 10.183 18.085 21.143 Atomic orbital electron populations 1.20781 0.89121 1.03036 1.03575 1.21037 0.96838 0.87712 0.93696 1.67510 1.10091 1.29070 1.12873 1.22696 0.89495 0.98393 0.95220 1.22058 1.01357 0.93379 1.03146 1.21434 0.93580 0.98601 0.95071 1.20101 0.94220 0.94979 1.02297 1.20703 1.01787 0.95473 0.96157 1.20322 0.78102 0.80845 0.90552 1.90722 1.53680 1.50735 1.46234 1.48543 1.55115 1.21514 1.08636 1.21822 0.96063 0.94654 0.89244 1.22020 0.94911 1.01256 0.98954 1.21492 1.01179 0.99746 0.92095 1.21823 0.94635 0.97906 0.98496 0.92382 1.20807 0.95436 0.90217 0.91142 1.44037 1.00899 1.08903 1.77208 1.19137 1.01334 0.95630 1.21822 0.91671 1.25035 0.99007 0.99366 0.96257 1.70037 1.23182 1.34111 1.27238 0.86326 0.77677 0.85164 0.77864 1.21504 1.21625 1.20467 1.20437 0.84280 1.01179 0.89527 1.22273 0.98176 0.95824 1.02237 1.21335 0.94516 0.97604 0.81103 0.88841 0.89931 0.90849 0.90502 0.82888 0.84866 0.84998 0.88069 0.87641 0.91030 0.90554 0.92121 0.91228 0.92295 0.90015 0.92465 0.96387 0.93638 0.89045 0.96531 0.93305 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 9.77 36.01 0.35 -0.78 16 2 C 0.14 1.81 6.78 -82.59 -0.56 1.25 16 3 N -0.49 -6.35 10.27 -9.47 -0.10 -6.45 16 4 C 0.10 1.06 11.18 -17.54 -0.20 0.87 16 5 C -0.18 -1.75 10.11 -39.44 -0.40 -2.15 16 6 C -0.06 -0.65 9.84 -39.28 -0.39 -1.04 16 7 C -0.11 -1.33 4.39 -104.48 -0.46 -1.78 16 8 C -0.10 -1.01 3.70 -29.04 -0.11 -1.12 16 9 C 0.51 7.33 7.70 -10.99 -0.08 7.25 16 10 O -0.54 -10.00 15.49 5.55 0.09 -9.91 16 11 N -0.61 -8.42 2.65 -164.59 -0.44 -8.86 16 12 C 0.11 1.12 5.89 -3.48 -0.02 1.10 16 13 C -0.13 -1.46 6.10 -26.36 -0.16 -1.62 16 14 C -0.11 -1.59 4.82 -26.74 -0.13 -1.72 16 15 C -0.11 -1.79 2.50 -90.75 -0.23 -2.02 16 16 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 17 C 0.15 3.07 5.88 -3.94 -0.02 3.05 16 18 N -0.59 -14.05 2.57 -173.59 -0.45 -14.50 16 19 C -0.25 -6.56 9.60 -15.06 -0.14 -6.71 16 20 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 21 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 22 N -0.90 -25.76 11.19 55.49 0.62 -25.14 16 23 Si 0.90 21.17 29.59 -169.99 -5.03 16.14 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.17 4.01 5.28 -4.55 -0.02 3.99 16 28 C -0.15 -2.72 4.90 -27.40 -0.13 -2.85 16 29 C 0.16 2.69 2.69 -67.33 -0.18 2.51 16 30 H 0.09 1.86 7.06 -51.93 -0.37 1.50 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.61 6.02 -51.93 -0.31 0.30 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.10 0.79 7.85 -51.93 -0.41 0.38 16 38 H 0.11 0.82 5.75 -51.93 -0.30 0.52 16 39 H 0.07 0.79 7.23 -51.93 -0.38 0.41 16 40 H 0.08 0.58 5.96 -51.93 -0.31 0.27 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 1.42 6.09 -51.93 -0.32 1.10 16 45 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 48 H 0.09 2.39 6.02 -51.93 -0.31 2.07 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 51 H 0.06 1.12 5.31 -51.93 -0.28 0.85 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -32.48 388.00 -10.44 -42.92 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.01 Total: 1.76 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.97 Total: -1.81 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.36 Total: -54.95 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.48 -10.44 -42.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021668500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.916 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds