Wall clock time and date at job start Wed Apr 1 2020 01:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31889 * 119.61746 * 2 1 4 4 C 1.31854 * 121.72555 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.76282 * 0.27576 * 4 3 2 6 6 C 1.38627 * 119.16306 * 359.47788 * 5 4 3 7 7 C 1.38183 * 119.61745 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.41727 * 0.02562 * 7 2 1 9 9 C 1.50698 * 109.47335 * 85.00140 * 8 7 2 10 10 O 1.21287 * 119.99761 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00385 * 180.02562 * 9 8 7 12 12 C 1.46949 * 120.84381 * 359.71873 * 11 9 8 13 13 C 1.53608 * 108.77183 * 125.93260 * 12 11 9 14 14 C 1.53114 * 109.40984 * 54.30767 * 13 12 11 15 15 C 1.52862 * 109.34065 * 299.21830 * 14 13 12 16 16 H 1.08998 * 109.25295 * 302.48858 * 15 14 13 17 17 C 1.52777 * 109.56427 * 182.83277 * 15 14 13 18 18 N 1.46891 * 109.18871 * 293.08338 * 17 15 14 19 19 C 1.36934 * 120.77517 * 126.67284 * 18 17 15 20 20 H 1.08001 * 119.99877 * 332.29755 * 19 18 17 21 21 C 1.38813 * 120.00038 * 152.30132 * 19 18 17 22 22 N 1.31621 * 120.00129 * 342.52266 * 21 19 18 23 23 Si 1.86805 * 120.00190 * 162.52906 * 21 19 18 24 24 H 1.48494 * 109.47437 * 94.34967 * 23 21 19 25 25 H 1.48500 * 109.46937 * 214.35591 * 23 21 19 26 26 H 1.48507 * 109.46612 * 334.34972 * 23 21 19 27 27 C 1.46984 * 118.45165 * 306.65240 * 18 17 15 28 28 C 1.51470 * 108.80177 * 53.88868 * 27 18 17 29 29 C 1.47307 * 120.84574 * 179.97438 * 11 9 8 30 30 H 1.08990 * 110.07714 * 355.09362 * 29 11 9 31 31 H 1.08995 * 109.47124 * 90.00050 * 1 2 3 32 32 H 1.09004 * 109.47027 * 210.00156 * 1 2 3 33 33 H 1.08996 * 109.46873 * 329.99864 * 1 2 3 34 34 H 1.08000 * 119.62018 * 179.97438 * 4 3 2 35 35 H 1.08002 * 120.41888 * 179.69550 * 5 4 3 36 36 H 1.07997 * 120.79371 * 180.21975 * 6 5 4 37 37 H 1.08999 * 109.46967 * 204.99914 * 8 7 2 38 38 H 1.08996 * 109.47065 * 324.99549 * 8 7 2 39 39 H 1.09002 * 109.54635 * 245.84564 * 12 11 9 40 40 H 1.09005 * 109.54189 * 6.11423 * 12 11 9 41 41 H 1.08998 * 109.61847 * 294.25536 * 13 12 11 42 42 H 1.08999 * 109.39680 * 174.22060 * 13 12 11 43 43 H 1.08992 * 109.49769 * 179.25495 * 14 13 12 44 44 H 1.09002 * 109.49245 * 59.17519 * 14 13 12 45 45 H 1.08995 * 109.51707 * 52.99534 * 17 15 14 46 46 H 1.09005 * 109.51727 * 173.11292 * 17 15 14 47 47 H 0.96998 * 119.99929 * 180.02562 * 22 21 19 48 48 H 1.08992 * 109.61304 * 174.05229 * 27 18 17 49 49 H 1.09002 * 109.60555 * 294.39436 * 27 18 17 50 50 H 1.08994 * 109.65817 * 184.62018 * 28 27 18 51 51 H 1.09004 * 108.36884 * 65.21413 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1466 0.0000 4 6 3.4765 1.1951 0.0005 5 6 4.2267 0.0341 -0.0047 6 6 3.5766 -1.1903 0.0006 7 6 2.1899 -1.2013 -0.0005 8 6 1.4372 -2.5068 -0.0017 9 6 1.0796 -2.8793 -1.4175 10 8 1.4036 -2.1555 -2.3352 11 7 0.3988 -4.0161 -1.6638 12 6 0.0013 -4.9090 -0.5666 13 6 -1.5129 -5.1530 -0.6516 14 6 -1.8674 -5.6689 -2.0490 15 6 -1.4748 -4.6209 -3.0902 16 1 -1.9837 -3.6835 -2.8662 17 6 -1.8903 -5.1000 -4.4801 18 7 -1.0884 -6.2752 -4.8455 19 6 -1.6911 -7.4373 -5.2473 20 1 -2.6839 -7.6795 -4.8981 21 6 -1.0258 -8.3041 -6.1035 22 7 0.0085 -7.8788 -6.7975 23 14 -1.5986 -10.0743 -6.2707 24 1 -2.5247 -10.1879 -7.4259 25 1 -0.4239 -10.9561 -6.4894 26 1 -2.3024 -10.4862 -5.0296 27 6 0.3761 -6.1746 -4.7702 28 6 0.7623 -5.7042 -3.3831 29 6 0.0391 -4.3978 -3.0403 30 1 0.3236 -3.6070 -3.7344 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 3.9753 2.1529 0.0001 35 1 5.3057 0.0803 -0.0092 36 1 4.1368 -2.1137 0.0003 37 1 2.0625 -3.2871 0.4323 38 1 0.5263 -2.4015 0.5875 39 1 0.5321 -5.8568 -0.6572 40 1 0.2442 -4.4434 0.3887 41 1 -2.0450 -4.2207 -0.4627 42 1 -1.8026 -5.8940 0.0935 43 1 -2.9398 -5.8551 -2.1068 44 1 -1.3261 -6.5950 -2.2430 45 1 -2.9467 -5.3683 -4.4721 46 1 -1.7222 -4.3037 -5.2052 47 1 0.4731 -8.4845 -7.3960 48 1 0.8204 -7.1500 -4.9677 49 1 0.7316 -5.4546 -5.5072 50 1 1.8397 -5.5460 -3.3364 51 1 0.4775 -6.4753 -2.6672 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021668500.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:31 Heat of formation + Delta-G solvation = 0.381416 kcal Electronic energy + Delta-G solvation = -31286.441146 eV Core-core repulsion = 27378.066957 eV Total energy + Delta-G solvation = -3908.374189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.86571 -41.07474 -39.40248 -37.07745 -34.93544 -34.33460 -33.88239 -33.72319 -31.94510 -31.28112 -29.70505 -28.21787 -27.20622 -26.15699 -24.32640 -23.57479 -23.47870 -22.93764 -22.59631 -20.31542 -19.34873 -18.50580 -18.14314 -17.80561 -17.32658 -17.11351 -16.68173 -16.16916 -16.04514 -15.74136 -15.56914 -15.22388 -15.05060 -14.99408 -14.50406 -14.28706 -14.17732 -14.03241 -13.90452 -13.73079 -13.55089 -13.50455 -13.22009 -13.04606 -13.00074 -12.89757 -12.62857 -12.36623 -12.24386 -12.21217 -12.00253 -11.83166 -11.72043 -11.40765 -11.33359 -11.03995 -10.91101 -10.54770 -10.53890 -10.39057 -9.70861 -9.50216 -8.69189 -7.86602 -5.31404 0.15715 0.36809 1.47624 1.49170 1.59074 1.66953 2.02822 2.52155 2.84910 3.29457 3.41727 3.58117 3.62364 3.68444 3.87678 3.91955 3.95966 3.98889 4.03071 4.12092 4.16758 4.28168 4.39432 4.41493 4.50794 4.53289 4.63415 4.68325 4.69558 4.70999 4.74730 4.80864 4.83665 4.90300 4.94455 4.96934 5.01960 5.09627 5.15970 5.20058 5.25459 5.28690 5.32616 5.39419 5.43222 5.62504 5.64242 5.65984 5.74801 5.82950 6.38807 6.54877 7.07125 7.13968 7.23598 7.84453 8.38766 9.20707 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022282 B = 0.002665 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.324132 B =10505.158856 C =10929.084519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.120 3.880 3 N -0.517 5.517 4 C 0.084 3.916 5 C -0.180 4.180 6 C -0.073 4.073 7 C -0.128 4.128 8 C -0.090 4.090 9 C 0.512 3.488 10 O -0.589 6.589 11 N -0.602 5.602 12 C 0.098 3.902 13 C -0.125 4.125 14 C -0.103 4.103 15 C -0.096 4.096 16 H 0.071 0.929 17 C 0.147 3.853 18 N -0.600 5.600 19 C -0.252 4.252 20 H 0.072 0.928 21 C -0.054 4.054 22 N -0.939 5.939 23 Si 0.967 3.033 24 H -0.290 1.290 25 H -0.295 1.295 26 H -0.264 1.264 27 C 0.182 3.818 28 C -0.127 4.127 29 C 0.164 3.836 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.176 0.824 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.072 0.928 40 H 0.122 0.878 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.062 0.938 46 H -0.002 1.002 47 H 0.248 0.752 48 H 0.061 0.939 49 H -0.019 1.019 50 H 0.050 0.950 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.459 10.371 22.772 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.017 4.017 3 N -0.227 5.227 4 C -0.072 4.072 5 C -0.199 4.199 6 C -0.099 4.099 7 C -0.130 4.130 8 C -0.129 4.129 9 C 0.302 3.698 10 O -0.469 6.469 11 N -0.334 5.334 12 C -0.023 4.023 13 C -0.163 4.163 14 C -0.141 4.141 15 C -0.117 4.117 16 H 0.090 0.910 17 C 0.021 3.979 18 N -0.323 5.323 19 C -0.382 4.382 20 H 0.089 0.911 21 C -0.249 4.249 22 N -0.585 5.585 23 Si 0.795 3.205 24 H -0.217 1.217 25 H -0.222 1.222 26 H -0.189 1.189 27 C 0.055 3.945 28 C -0.166 4.166 29 C 0.061 3.939 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.193 0.807 35 H 0.179 0.821 36 H 0.170 0.830 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.090 0.910 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.116 0.884 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.016 0.984 47 H 0.058 0.942 48 H 0.079 0.921 49 H -0.001 1.001 50 H 0.069 0.931 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.216 11.438 22.210 25.189 hybrid contribution 0.554 -1.531 -1.451 2.181 sum 3.770 9.907 20.760 23.309 Atomic orbital electron populations 1.20793 0.88313 1.04514 1.02598 1.21399 0.97768 0.88162 0.94375 1.67509 1.11359 1.29870 1.13978 1.23194 0.89154 1.00018 0.94868 1.22415 1.02838 0.92833 1.01835 1.21836 0.93668 0.99811 0.94581 1.20326 0.94888 0.95333 1.02465 1.20746 1.03562 0.95531 0.93094 1.21106 0.76841 0.79913 0.91932 1.90712 1.55579 1.52330 1.48317 1.48498 1.54998 1.22151 1.07736 1.22175 0.95885 0.94487 0.89737 1.21987 0.95146 1.02556 0.96562 1.21423 1.00912 0.97772 0.94000 1.21651 0.94263 0.99140 0.96641 0.91034 1.20948 0.95335 0.88487 0.93137 1.44226 1.01240 1.09550 1.77275 1.19489 1.01469 0.96319 1.20962 0.91080 1.25813 0.99487 1.03163 0.96398 1.70211 1.24769 1.35172 1.28388 0.85276 0.76866 0.80334 0.78055 1.21674 1.22163 1.18895 1.20174 0.84183 0.98597 0.91511 1.21987 0.98389 0.97030 0.99242 1.20866 0.94599 0.95368 0.83093 0.92369 0.91995 0.88396 0.90075 0.80670 0.82064 0.83011 0.84818 0.84641 0.90993 0.86020 0.90715 0.88409 0.92088 0.92584 0.92000 0.98379 0.94244 0.92084 1.00138 0.93136 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.06 9.77 71.24 0.70 -1.36 16 2 C 0.12 2.87 6.78 42.54 0.29 3.16 16 3 N -0.52 -13.22 10.27 -183.88 -1.89 -15.11 16 4 C 0.08 1.71 11.18 84.69 0.95 2.66 16 5 C -0.18 -3.14 10.11 22.36 0.23 -2.92 16 6 C -0.07 -1.39 9.84 22.47 0.22 -1.16 16 7 C -0.13 -2.69 4.39 -19.77 -0.09 -2.77 16 8 C -0.09 -1.44 3.70 29.10 0.11 -1.33 16 9 C 0.51 13.52 7.70 87.66 0.67 14.20 16 10 O -0.59 -21.99 15.49 -3.05 -0.05 -22.04 16 11 N -0.60 -15.32 2.65 -793.03 -2.11 -17.43 16 12 C 0.10 1.64 5.89 86.50 0.51 2.15 16 13 C -0.12 -2.15 6.10 30.84 0.19 -1.96 16 14 C -0.10 -2.82 4.82 30.59 0.15 -2.67 16 15 C -0.10 -3.15 2.50 -10.88 -0.03 -3.17 16 16 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 17 C 0.15 6.14 5.88 86.23 0.51 6.64 16 18 N -0.60 -29.64 2.57 -703.12 -1.81 -31.45 16 19 C -0.25 -13.49 9.60 84.03 0.81 -12.69 16 20 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 21 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 22 N -0.94 -55.94 11.19 21.65 0.24 -55.70 16 23 Si 0.97 44.17 29.59 68.60 2.03 46.20 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 25 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 27 C 0.18 8.94 5.28 85.79 0.45 9.39 16 28 C -0.13 -4.82 4.90 30.16 0.15 -4.67 16 29 C 0.16 5.66 2.69 44.94 0.12 5.78 16 30 H 0.06 2.43 7.06 -2.39 -0.02 2.42 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.10 1.32 6.02 -2.39 -0.01 1.30 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 35 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 36 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 37 H 0.13 1.32 7.85 -2.39 -0.02 1.30 16 38 H 0.14 1.36 5.75 -2.39 -0.01 1.35 16 39 H 0.07 1.26 7.23 -2.39 -0.02 1.24 16 40 H 0.12 1.00 5.96 -2.38 -0.01 0.99 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 1.84 6.09 -2.39 -0.01 1.82 16 45 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 46 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 47 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 48 H 0.06 3.36 6.02 -2.39 -0.01 3.35 16 49 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 50 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 51 H 0.07 2.64 5.31 -2.38 -0.01 2.62 16 Total: -1.00 -76.50 388.00 3.69 -72.80 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 0.93 Total: 16.01 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 6.34 Total: 6.72 kcal Atomic # 7 Polarization: -114.13 SS G_CDS: -5.56 Total: -119.69 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.04 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -76.50 3.69 -72.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021668500.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.185 kcal (2) G-P(sol) polarization free energy of solvation -76.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds