Wall clock time and date at job start Wed Apr 1 2020 01:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38229 * 119.62022 * 2 1 4 4 C 1.38623 * 119.16623 * 179.74495 * 3 2 1 5 5 C 1.38683 * 118.41604 * 0.51513 * 4 3 2 6 6 C 1.50694 * 120.41739 * 179.77964 * 5 4 3 7 7 C 1.50701 * 109.47345 * 269.72452 * 6 5 4 8 8 O 1.21282 * 119.99902 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00096 * 180.02562 * 7 6 5 10 10 C 1.46944 * 120.84868 * 359.97438 * 9 7 6 11 11 C 1.53147 * 109.02427 * 125.95395 * 10 9 7 12 12 C 1.53110 * 109.47927 * 54.07933 * 11 10 9 13 13 C 1.52862 * 109.34678 * 299.35201 * 12 11 10 14 14 H 1.08996 * 109.24915 * 302.48509 * 13 12 11 15 15 C 1.52769 * 110.20867 * 182.43190 * 13 12 11 16 16 N 1.45149 * 110.13420 * 293.34435 * 15 13 12 17 17 C 1.36939 * 121.16786 * 126.25093 * 16 15 13 18 18 H 1.07994 * 119.99675 * 332.67019 * 17 16 15 19 19 C 1.38812 * 119.99942 * 152.66515 * 17 16 15 20 20 N 1.31621 * 119.99704 * 159.32918 * 19 17 16 21 21 Si 1.86800 * 120.00238 * 339.32528 * 19 17 16 22 22 H 1.48491 * 109.47217 * 93.30251 * 21 19 17 23 23 H 1.48500 * 109.47044 * 213.30673 * 21 19 17 24 24 H 1.48508 * 109.47075 * 333.30444 * 21 19 17 25 25 C 1.46978 * 118.06384 * 306.25215 * 16 15 13 26 26 C 1.53107 * 108.61675 * 54.29835 * 25 16 15 27 27 C 1.47304 * 120.84719 * 179.97438 * 9 7 6 28 28 H 1.09002 * 110.67772 * 355.46345 * 27 9 7 29 29 C 1.38177 * 119.16153 * 359.50455 * 5 4 3 30 30 N 1.31861 * 119.62039 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.47158 * 269.97292 * 1 2 3 32 32 H 1.08991 * 109.47075 * 29.97780 * 1 2 3 33 33 H 1.09002 * 109.47060 * 149.97801 * 1 2 3 34 34 H 1.08004 * 120.41567 * 0.03968 * 3 2 1 35 35 H 1.07997 * 120.79720 * 180.27038 * 4 3 2 36 36 H 1.08998 * 109.47186 * 149.72042 * 6 5 4 37 37 H 1.09008 * 109.47266 * 29.72316 * 6 5 4 38 38 H 1.09002 * 109.54285 * 6.09437 * 10 9 7 39 39 H 1.08997 * 109.54815 * 245.81954 * 10 9 7 40 40 H 1.09002 * 109.47103 * 174.07892 * 11 10 9 41 41 H 1.08996 * 109.47066 * 294.07658 * 11 10 9 42 42 H 1.09005 * 109.49309 * 59.31403 * 12 11 10 43 43 H 1.09002 * 109.49304 * 179.36903 * 12 11 10 44 44 H 1.08997 * 109.51646 * 52.55431 * 15 13 12 45 45 H 1.09004 * 109.51467 * 172.71820 * 15 13 12 46 46 H 0.97005 * 119.99624 * 179.97438 * 20 19 17 47 47 H 1.08995 * 109.61721 * 294.55747 * 25 16 15 48 48 H 1.09003 * 109.75280 * 174.11562 * 25 16 15 49 49 H 1.08993 * 109.45167 * 184.61954 * 26 25 16 50 50 H 1.09002 * 109.43379 * 64.66973 * 26 25 16 51 51 H 1.08005 * 119.61601 * 180.24925 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5763 1.1907 0.0054 5 6 4.2266 -0.0342 -0.0004 6 6 5.7322 -0.0987 0.0001 7 6 6.2346 -0.1200 -1.4205 8 8 5.4475 -0.0866 -2.3426 9 7 7.5585 -0.1772 -1.6663 10 6 8.5285 -0.2190 -0.5633 11 6 9.4450 -1.4317 -0.7502 12 6 10.0731 -1.3867 -2.1458 13 6 8.9675 -1.4313 -3.2004 14 1 8.3700 -2.3315 -3.0569 15 6 9.5754 -1.4482 -4.6019 16 7 10.2440 -0.1884 -4.8717 17 6 11.5505 -0.1528 -5.2805 18 1 12.2253 -0.9485 -5.0017 19 6 12.0073 0.9059 -6.0533 20 7 13.2952 1.1714 -6.1104 21 14 10.7942 1.9539 -7.0123 22 1 10.4058 3.1326 -6.1971 23 1 11.4265 2.4122 -8.2754 24 1 9.5860 1.1498 -7.3270 25 6 9.4778 1.0531 -4.6935 26 6 8.8958 1.0693 -3.2775 27 6 8.0700 -0.1994 -3.0475 28 1 7.2478 -0.2447 -3.7617 29 6 3.4766 -1.1947 -0.0008 30 7 2.1587 -1.1463 -0.0005 31 1 -0.3634 -0.0005 1.0277 32 1 -0.3633 0.8901 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6507 2.1373 0.0006 35 1 4.1366 2.1139 0.0099 36 1 6.0569 -1.0035 0.5140 37 1 6.1332 0.7748 0.5143 38 1 7.9986 -0.3052 0.3853 39 1 9.1252 0.6931 -0.5677 40 1 10.2323 -1.4117 0.0034 41 1 8.8628 -2.3469 -0.6431 42 1 10.6455 -0.4658 -2.2576 43 1 10.7341 -2.2438 -2.2749 44 1 10.3098 -2.2507 -4.6706 45 1 8.7882 -1.6099 -5.3383 46 1 13.6144 1.9110 -6.6507 47 1 8.6682 1.0913 -5.4223 48 1 10.1334 1.9133 -4.8295 49 1 8.2574 1.9445 -3.1574 50 1 9.7082 1.1103 -2.5519 51 1 3.9755 -2.1527 -0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021734829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:49 Heat of formation + Delta-G solvation = 20.015863 kcal Electronic energy + Delta-G solvation = -30870.943056 eV Core-core repulsion = 26963.420281 eV Total energy + Delta-G solvation = -3907.522775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.86002 -40.18771 -38.31148 -35.88919 -34.30255 -32.95832 -32.48857 -32.41691 -30.89200 -30.21605 -29.77388 -26.53355 -25.82513 -24.62045 -23.72489 -22.69349 -22.45278 -21.92990 -21.36493 -19.31471 -18.01671 -17.25345 -16.93830 -16.84986 -16.44544 -15.92011 -15.40771 -15.21321 -14.95446 -14.70749 -14.52582 -14.22020 -13.92702 -13.62877 -13.50341 -13.36115 -13.17379 -13.05294 -12.78438 -12.58575 -12.57539 -12.43824 -12.30262 -12.23636 -11.98955 -11.77704 -11.64713 -11.16107 -10.85984 -10.75625 -10.49171 -10.31270 -10.12958 -10.06861 -10.02033 -9.77698 -9.65498 -9.59572 -9.47841 -8.94387 -8.65139 -8.42615 -7.00646 -5.98038 -3.33947 0.87312 1.10948 2.63080 2.98978 3.30714 3.48153 3.51745 3.59209 4.06895 4.41281 4.47248 4.50917 4.53074 4.66731 4.74542 4.81992 4.95467 4.98809 5.03771 5.08122 5.14275 5.20706 5.28313 5.29661 5.32800 5.34367 5.39696 5.53106 5.54895 5.57800 5.72914 5.74695 5.84976 5.90954 5.93409 6.00333 6.04156 6.09973 6.16145 6.24372 6.32626 6.35258 6.50693 6.58333 6.61237 6.65075 6.71194 6.74577 6.93567 7.50372 7.80476 7.94009 8.20694 8.31023 8.91832 9.69595 10.08117 11.17650 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.002660 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.500274 B =10524.274511 C =11280.954049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.121 3.879 3 C -0.171 4.171 4 C -0.058 4.058 5 C -0.120 4.120 6 C -0.097 4.097 7 C 0.514 3.486 8 O -0.538 6.538 9 N -0.605 5.605 10 C 0.105 3.895 11 C -0.133 4.133 12 C -0.109 4.109 13 C -0.109 4.109 14 H 0.063 0.937 15 C 0.156 3.844 16 N -0.599 5.599 17 C -0.258 4.258 18 H 0.087 0.913 19 C 0.024 3.976 20 N -0.907 5.907 21 Si 0.880 3.120 22 H -0.289 1.289 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.126 3.874 26 C -0.141 4.141 27 C 0.154 3.846 28 H 0.095 0.905 29 C 0.119 3.881 30 N -0.485 5.485 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.022 0.978 46 H 0.262 0.738 47 H 0.027 0.973 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.071 0.929 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.846 -1.751 17.907 25.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.016 4.016 3 C -0.191 4.191 4 C -0.084 4.084 5 C -0.122 4.122 6 C -0.138 4.138 7 C 0.301 3.699 8 O -0.415 6.415 9 N -0.338 5.338 10 C -0.018 4.018 11 C -0.172 4.172 12 C -0.146 4.146 13 C -0.130 4.130 14 H 0.081 0.919 15 C 0.028 3.972 16 N -0.322 5.322 17 C -0.386 4.386 18 H 0.104 0.896 19 C -0.175 4.175 20 N -0.550 5.550 21 Si 0.711 3.289 22 H -0.217 1.217 23 H -0.232 1.232 24 H -0.195 1.195 25 C -0.001 4.001 26 C -0.181 4.181 27 C 0.052 3.948 28 H 0.113 0.887 29 C -0.039 4.039 30 N -0.194 5.194 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.040 0.960 46 H 0.072 0.928 47 H 0.045 0.955 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.090 0.910 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -18.597 -2.432 17.326 25.533 hybrid contribution 0.107 1.554 -0.565 1.657 sum -18.489 -0.879 16.761 24.971 Atomic orbital electron populations 1.20699 0.88946 1.03486 1.02895 1.21291 0.97007 0.88459 0.94875 1.21899 0.94714 0.99255 1.03187 1.21424 0.94433 0.97716 0.94862 1.20291 0.95283 0.94595 1.02047 1.20633 0.92101 1.05282 0.95748 1.20401 0.82026 0.76603 0.90843 1.90723 1.54786 1.49781 1.46210 1.48495 1.05019 1.72328 1.07961 1.21751 0.91511 0.99485 0.89030 1.21937 0.98751 0.97523 0.98955 1.21485 0.97420 1.03725 0.91992 1.21858 0.96351 0.96563 0.98259 0.91858 1.20507 0.95511 0.89636 0.91508 1.43920 1.10723 0.99469 1.78058 1.18869 0.83452 1.09444 1.26791 0.89579 1.25255 0.95424 0.98261 0.98511 1.69835 1.12976 1.30346 1.41851 0.86988 0.81834 0.80178 0.79895 1.21716 1.23173 1.19473 1.21330 0.94889 0.91041 0.92806 1.22392 0.99125 0.96001 1.00608 1.21313 0.96181 0.95690 0.81617 0.88686 1.22534 0.89220 0.97778 0.94336 1.67512 1.09720 1.29374 1.12766 0.90526 0.90776 0.90493 0.84882 0.85006 0.87729 0.87899 0.90343 0.91002 0.90979 0.92061 0.89968 0.91947 0.91627 0.96049 0.92773 0.95517 0.90701 0.92828 0.90994 0.83044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.17 36.00 0.37 -0.40 16 2 C 0.12 1.30 6.78 -82.58 -0.56 0.74 16 3 C -0.17 -1.65 9.74 -39.44 -0.38 -2.04 16 4 C -0.06 -0.59 9.86 -39.28 -0.39 -0.98 16 5 C -0.12 -1.29 4.39 -104.48 -0.46 -1.75 16 6 C -0.10 -0.88 4.21 -29.04 -0.12 -1.00 16 7 C 0.51 6.90 7.70 -10.99 -0.08 6.82 16 8 O -0.54 -9.58 15.51 5.56 0.09 -9.49 16 9 N -0.61 -7.93 2.66 -164.89 -0.44 -8.37 16 10 C 0.11 1.06 5.86 -3.72 -0.02 1.04 16 11 C -0.13 -1.42 6.08 -26.60 -0.16 -1.58 16 12 C -0.11 -1.57 4.86 -26.75 -0.13 -1.70 16 13 C -0.11 -1.73 2.51 -90.72 -0.23 -1.95 16 14 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 15 C 0.16 2.98 5.79 -4.89 -0.03 2.96 16 16 N -0.60 -13.62 2.39 -174.00 -0.42 -14.04 16 17 C -0.26 -6.91 10.02 -15.06 -0.15 -7.06 16 18 H 0.09 2.46 8.04 -52.49 -0.42 2.04 16 19 C 0.02 0.69 5.24 -17.43 -0.09 0.60 16 20 N -0.91 -27.24 13.97 55.49 0.78 -26.46 16 21 Si 0.88 22.25 24.37 -169.99 -4.14 18.11 16 22 H -0.29 -7.07 6.63 56.52 0.37 -6.70 16 23 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 24 H -0.27 -6.77 6.63 56.52 0.37 -6.40 16 25 C 0.13 2.70 4.18 -3.73 -0.02 2.68 16 26 C -0.14 -2.47 5.02 -26.61 -0.13 -2.60 16 27 C 0.15 2.49 2.62 -67.34 -0.18 2.31 16 28 H 0.10 1.75 7.10 -51.93 -0.37 1.38 16 29 C 0.12 1.37 10.86 -17.55 -0.19 1.18 16 30 N -0.48 -6.05 10.27 -9.47 -0.10 -6.15 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.10 0.71 7.66 -51.93 -0.40 0.31 16 37 H 0.10 0.71 7.89 -51.92 -0.41 0.30 16 38 H 0.08 0.54 5.96 -51.93 -0.31 0.23 16 39 H 0.07 0.75 7.25 -51.93 -0.38 0.37 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.41 6.15 -51.93 -0.32 1.09 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.25 7.86 -51.93 -0.41 0.84 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.03 0.59 7.13 -51.93 -0.37 0.22 16 48 H 0.07 1.76 4.46 -51.93 -0.23 1.53 16 49 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.07 1.24 5.32 -51.93 -0.28 0.97 16 51 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 LS Contribution 385.96 15.07 5.82 5.82 Total: -1.00 -33.54 385.96 -9.52 -43.06 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.15 Total: 0.27 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -2.96 Total: -2.74 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.18 Total: -55.02 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.14 Total: 18.11 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.54 -9.52 -43.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021734829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.079 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds