Wall clock time and date at job start Wed Apr 1 2020 01:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38229 * 119.62022 * 2 1 4 4 C 1.38623 * 119.16623 * 179.74495 * 3 2 1 5 5 C 1.38683 * 118.41604 * 0.51513 * 4 3 2 6 6 C 1.50694 * 120.41739 * 179.77964 * 5 4 3 7 7 C 1.50701 * 109.47345 * 269.72452 * 6 5 4 8 8 O 1.21282 * 119.99902 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00096 * 180.02562 * 7 6 5 10 10 C 1.46944 * 120.84868 * 359.97438 * 9 7 6 11 11 C 1.53147 * 109.02427 * 125.95395 * 10 9 7 12 12 C 1.53110 * 109.47927 * 54.07933 * 11 10 9 13 13 C 1.52862 * 109.34678 * 299.35201 * 12 11 10 14 14 H 1.08996 * 109.24915 * 302.48509 * 13 12 11 15 15 C 1.52769 * 110.20867 * 182.43190 * 13 12 11 16 16 N 1.45149 * 110.13420 * 293.34435 * 15 13 12 17 17 C 1.36939 * 121.16786 * 126.25093 * 16 15 13 18 18 H 1.07994 * 119.99675 * 332.67019 * 17 16 15 19 19 C 1.38812 * 119.99942 * 152.66515 * 17 16 15 20 20 N 1.31621 * 119.99704 * 159.32918 * 19 17 16 21 21 Si 1.86800 * 120.00238 * 339.32528 * 19 17 16 22 22 H 1.48491 * 109.47217 * 93.30251 * 21 19 17 23 23 H 1.48500 * 109.47044 * 213.30673 * 21 19 17 24 24 H 1.48508 * 109.47075 * 333.30444 * 21 19 17 25 25 C 1.46978 * 118.06384 * 306.25215 * 16 15 13 26 26 C 1.53107 * 108.61675 * 54.29835 * 25 16 15 27 27 C 1.47304 * 120.84719 * 179.97438 * 9 7 6 28 28 H 1.09002 * 110.67772 * 355.46345 * 27 9 7 29 29 C 1.38177 * 119.16153 * 359.50455 * 5 4 3 30 30 N 1.31861 * 119.62039 * 180.02562 * 2 1 3 31 31 H 1.09005 * 109.47158 * 269.97292 * 1 2 3 32 32 H 1.08991 * 109.47075 * 29.97780 * 1 2 3 33 33 H 1.09002 * 109.47060 * 149.97801 * 1 2 3 34 34 H 1.08004 * 120.41567 * 0.03968 * 3 2 1 35 35 H 1.07997 * 120.79720 * 180.27038 * 4 3 2 36 36 H 1.08998 * 109.47186 * 149.72042 * 6 5 4 37 37 H 1.09008 * 109.47266 * 29.72316 * 6 5 4 38 38 H 1.09002 * 109.54285 * 6.09437 * 10 9 7 39 39 H 1.08997 * 109.54815 * 245.81954 * 10 9 7 40 40 H 1.09002 * 109.47103 * 174.07892 * 11 10 9 41 41 H 1.08996 * 109.47066 * 294.07658 * 11 10 9 42 42 H 1.09005 * 109.49309 * 59.31403 * 12 11 10 43 43 H 1.09002 * 109.49304 * 179.36903 * 12 11 10 44 44 H 1.08997 * 109.51646 * 52.55431 * 15 13 12 45 45 H 1.09004 * 109.51467 * 172.71820 * 15 13 12 46 46 H 0.97005 * 119.99624 * 179.97438 * 20 19 17 47 47 H 1.08995 * 109.61721 * 294.55747 * 25 16 15 48 48 H 1.09003 * 109.75280 * 174.11562 * 25 16 15 49 49 H 1.08993 * 109.45167 * 184.61954 * 26 25 16 50 50 H 1.09002 * 109.43379 * 64.66973 * 26 25 16 51 51 H 1.08005 * 119.61601 * 180.24925 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5763 1.1907 0.0054 5 6 4.2266 -0.0342 -0.0004 6 6 5.7322 -0.0987 0.0001 7 6 6.2346 -0.1200 -1.4205 8 8 5.4475 -0.0866 -2.3426 9 7 7.5585 -0.1772 -1.6663 10 6 8.5285 -0.2190 -0.5633 11 6 9.4450 -1.4317 -0.7502 12 6 10.0731 -1.3867 -2.1458 13 6 8.9675 -1.4313 -3.2004 14 1 8.3700 -2.3315 -3.0569 15 6 9.5754 -1.4482 -4.6019 16 7 10.2440 -0.1884 -4.8717 17 6 11.5505 -0.1528 -5.2805 18 1 12.2253 -0.9485 -5.0017 19 6 12.0073 0.9059 -6.0533 20 7 13.2952 1.1714 -6.1104 21 14 10.7942 1.9539 -7.0123 22 1 10.4058 3.1326 -6.1971 23 1 11.4265 2.4122 -8.2754 24 1 9.5860 1.1498 -7.3270 25 6 9.4778 1.0531 -4.6935 26 6 8.8958 1.0693 -3.2775 27 6 8.0700 -0.1994 -3.0475 28 1 7.2478 -0.2447 -3.7617 29 6 3.4766 -1.1947 -0.0008 30 7 2.1587 -1.1463 -0.0005 31 1 -0.3634 -0.0005 1.0277 32 1 -0.3633 0.8901 -0.5134 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6507 2.1373 0.0006 35 1 4.1366 2.1139 0.0099 36 1 6.0569 -1.0035 0.5140 37 1 6.1332 0.7748 0.5143 38 1 7.9986 -0.3052 0.3853 39 1 9.1252 0.6931 -0.5677 40 1 10.2323 -1.4117 0.0034 41 1 8.8628 -2.3469 -0.6431 42 1 10.6455 -0.4658 -2.2576 43 1 10.7341 -2.2438 -2.2749 44 1 10.3098 -2.2507 -4.6706 45 1 8.7882 -1.6099 -5.3383 46 1 13.6144 1.9110 -6.6507 47 1 8.6682 1.0913 -5.4223 48 1 10.1334 1.9133 -4.8295 49 1 8.2574 1.9445 -3.1574 50 1 9.7082 1.1103 -2.5519 51 1 3.9755 -2.1527 -0.0011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021734829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:48 Heat of formation + Delta-G solvation = -0.550023 kcal Electronic energy + Delta-G solvation = -30871.834860 eV Core-core repulsion = 26963.420281 eV Total energy + Delta-G solvation = -3908.414579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.85509 -41.10915 -39.56713 -37.30426 -35.10684 -34.44621 -33.87957 -33.21361 -32.47095 -31.54630 -30.66478 -27.58991 -27.13371 -25.92722 -24.49786 -24.14165 -23.84810 -22.94943 -22.48832 -20.47073 -19.42401 -18.60618 -18.19376 -17.68918 -17.49255 -17.16831 -16.70826 -16.27525 -16.08893 -15.86255 -15.75024 -15.42024 -15.21960 -14.94178 -14.63606 -14.48557 -14.27684 -14.06662 -13.89030 -13.82675 -13.76389 -13.58791 -13.34796 -13.19661 -13.16509 -12.95565 -12.68584 -12.44016 -12.31636 -12.26691 -11.97987 -11.82245 -11.71931 -11.55808 -11.33570 -11.07663 -10.93701 -10.74824 -10.60465 -10.40198 -9.68680 -9.55235 -8.95230 -8.17543 -5.48559 0.13042 0.36839 1.26241 1.39152 1.47030 1.65198 1.98996 2.39081 2.82609 3.04633 3.34508 3.39565 3.56968 3.69349 3.82694 3.86158 3.88171 3.98447 4.04337 4.06630 4.11976 4.18572 4.25292 4.39015 4.40135 4.49449 4.54352 4.58435 4.63045 4.69997 4.72752 4.78809 4.79837 4.86682 4.88070 4.88653 4.89644 4.97674 4.99960 5.13822 5.16610 5.18874 5.21339 5.27513 5.32820 5.37589 5.58550 5.65787 5.81472 5.87202 6.13391 6.51550 6.90462 7.05411 7.20689 7.61354 8.03672 9.01916 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.002660 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.500274 B =10524.274511 C =11280.954049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.102 3.898 3 C -0.176 4.176 4 C -0.070 4.070 5 C -0.130 4.130 6 C -0.086 4.086 7 C 0.512 3.488 8 O -0.588 6.588 9 N -0.602 5.602 10 C 0.100 3.900 11 C -0.125 4.125 12 C -0.106 4.106 13 C -0.099 4.099 14 H 0.077 0.923 15 C 0.150 3.850 16 N -0.608 5.608 17 C -0.237 4.237 18 H 0.060 0.940 19 C -0.029 4.029 20 N -0.952 5.952 21 Si 0.936 3.064 22 H -0.277 1.277 23 H -0.311 1.311 24 H -0.269 1.269 25 C 0.121 3.879 26 C -0.128 4.128 27 C 0.161 3.839 28 H 0.070 0.930 29 C 0.099 3.901 30 N -0.515 5.515 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.019 0.981 46 H 0.261 0.739 47 H 0.022 0.978 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.076 0.924 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.693 -1.326 20.866 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.035 4.035 3 C -0.195 4.195 4 C -0.095 4.095 5 C -0.132 4.132 6 C -0.126 4.126 7 C 0.302 3.698 8 O -0.469 6.469 9 N -0.334 5.334 10 C -0.021 4.021 11 C -0.163 4.163 12 C -0.144 4.144 13 C -0.119 4.119 14 H 0.096 0.904 15 C 0.024 3.976 16 N -0.331 5.331 17 C -0.367 4.367 18 H 0.078 0.922 19 C -0.224 4.224 20 N -0.598 5.598 21 Si 0.766 3.234 22 H -0.204 1.204 23 H -0.240 1.240 24 H -0.194 1.194 25 C -0.004 4.004 26 C -0.167 4.167 27 C 0.057 3.943 28 H 0.088 0.912 29 C -0.058 4.058 30 N -0.225 5.225 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.087 0.913 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.141 0.859 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.037 0.963 46 H 0.070 0.930 47 H 0.040 0.960 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.472 -2.021 20.336 28.927 hybrid contribution 0.650 1.339 -1.475 2.095 sum -19.822 -0.682 18.861 27.370 Atomic orbital electron populations 1.20768 0.87158 1.03945 1.03929 1.21833 0.98472 0.88530 0.94669 1.22237 0.94976 0.99969 1.02331 1.21795 0.94955 0.98396 0.94397 1.20484 0.96264 0.94479 1.01976 1.20687 0.90887 1.08242 0.92768 1.21164 0.81357 0.75057 0.92208 1.90711 1.55990 1.51961 1.48200 1.48465 1.05757 1.72013 1.07156 1.22055 0.91246 0.99184 0.89616 1.21897 0.99454 0.98493 0.96454 1.21424 0.96691 1.01951 0.94325 1.21702 0.96767 0.97195 0.96266 0.90428 1.20670 0.95162 0.87854 0.93891 1.43968 1.09699 1.01309 1.78164 1.18807 0.84810 1.07880 1.25174 0.92241 1.25772 0.96577 1.00136 0.99939 1.69940 1.14639 1.31714 1.43520 0.86071 0.79706 0.79293 0.78288 1.20351 1.24043 1.19428 1.21315 0.94136 0.89567 0.95415 1.22197 0.99425 0.97379 0.97748 1.20926 0.95032 0.94785 0.83556 0.91168 1.22830 0.89338 0.98791 0.94831 1.67513 1.10482 1.30599 1.13922 0.89125 0.88985 0.91337 0.82400 0.83178 0.84624 0.84756 0.85880 0.90977 0.88730 0.90725 0.92858 0.92522 0.92147 0.96257 0.92989 0.95968 0.92758 0.91749 0.90560 0.82139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.17 71.24 0.72 -0.63 16 2 C 0.10 2.05 6.78 42.55 0.29 2.34 16 3 C -0.18 -3.03 9.74 22.36 0.22 -2.81 16 4 C -0.07 -1.24 9.86 22.47 0.22 -1.02 16 5 C -0.13 -2.45 4.39 -19.77 -0.09 -2.53 16 6 C -0.09 -1.18 4.21 29.10 0.12 -1.06 16 7 C 0.51 12.21 7.70 87.66 0.67 12.88 16 8 O -0.59 -20.17 15.51 -3.04 -0.05 -20.22 16 9 N -0.60 -13.86 2.66 -793.97 -2.11 -15.97 16 10 C 0.10 1.55 5.86 86.34 0.51 2.05 16 11 C -0.13 -2.14 6.08 30.68 0.19 -1.95 16 12 C -0.11 -2.89 4.86 30.58 0.15 -2.74 16 13 C -0.10 -2.99 2.51 -10.86 -0.03 -3.02 16 14 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 15 C 0.15 5.79 5.79 86.56 0.50 6.30 16 16 N -0.61 -27.99 2.39 -704.40 -1.68 -29.68 16 17 C -0.24 -13.07 10.02 84.03 0.84 -12.23 16 18 H 0.06 3.55 8.04 -2.91 -0.02 3.52 16 19 C -0.03 -1.69 5.24 84.86 0.44 -1.24 16 20 N -0.95 -58.89 13.97 21.65 0.30 -58.59 16 21 Si 0.94 47.04 24.37 68.60 1.67 48.71 16 22 H -0.28 -13.17 6.63 99.48 0.66 -12.51 16 23 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 24 H -0.27 -13.32 6.63 99.48 0.66 -12.66 16 25 C 0.12 5.20 4.18 86.32 0.36 5.56 16 26 C -0.13 -4.31 5.02 30.67 0.15 -4.16 16 27 C 0.16 4.95 2.62 44.94 0.12 5.07 16 28 H 0.07 2.56 7.10 -2.39 -0.02 2.54 16 29 C 0.10 2.14 10.86 84.67 0.92 3.06 16 30 N -0.52 -12.47 10.27 -183.89 -1.89 -14.36 16 31 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 36 H 0.14 1.06 7.66 -2.39 -0.02 1.04 16 37 H 0.13 1.05 7.89 -2.38 -0.02 1.03 16 38 H 0.12 0.88 5.96 -2.39 -0.01 0.86 16 39 H 0.07 1.18 7.25 -2.39 -0.02 1.16 16 40 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.05 1.77 6.15 -2.38 -0.01 1.75 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.06 2.35 7.86 -2.39 -0.02 2.33 16 45 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 47 H 0.02 0.97 7.13 -2.39 -0.02 0.96 16 48 H 0.05 2.55 4.46 -2.39 -0.01 2.53 16 49 H 0.06 2.03 8.14 -2.39 -0.02 2.02 16 50 H 0.08 2.53 5.32 -2.39 -0.01 2.52 16 51 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -76.92 385.96 3.39 -73.53 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.83 Total: 12.69 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 6.32 Total: 3.88 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -5.38 Total: -118.59 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.05 Total: -20.22 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.67 Total: 48.71 kcal Total: -76.92 3.39 -73.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021734829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.985 kcal (2) G-P(sol) polarization free energy of solvation -76.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds