Wall clock time and date at job start Wed Apr 1 2020 02:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38604 * 119.54529 * 2 1 4 4 C 1.38578 * 119.34912 * 179.72307 * 3 2 1 5 5 C 1.38630 * 118.48983 * 0.25684 * 4 3 2 6 6 C 1.39266 * 119.06147 * 359.97438 * 5 4 3 7 7 C 1.48165 * 119.72331 * 179.97438 * 6 5 4 8 8 O 1.21514 * 120.00424 * 354.01300 * 7 6 5 9 9 N 1.34785 * 119.99941 * 174.00834 * 7 6 5 10 10 C 1.46919 * 120.62926 * 9.78813 * 9 7 6 11 11 C 1.53192 * 108.77824 * 126.36354 * 10 9 7 12 12 C 1.53045 * 109.31355 * 54.63227 * 11 10 9 13 13 C 1.53041 * 109.53525 * 298.63779 * 12 11 10 14 14 C 1.46921 * 120.62781 * 189.49892 * 9 7 6 15 15 H 1.09004 * 109.58391 * 113.84958 * 14 9 7 16 16 C 1.53000 * 109.59117 * 353.42598 * 14 9 7 17 17 H 1.08998 * 109.87430 * 42.91081 * 16 14 9 18 18 C 1.54320 * 109.88349 * 163.93025 * 16 14 9 19 19 C 1.55158 * 102.94406 * 141.60918 * 18 16 14 20 20 C 1.54908 * 101.57811 * 324.49675 * 19 18 16 21 21 N 1.47022 * 109.88112 * 281.73547 * 16 14 9 22 22 C 1.36943 * 125.64565 * 61.61761 * 21 16 14 23 23 H 1.07992 * 120.00392 * 350.72779 * 22 21 16 24 24 C 1.38813 * 119.99334 * 170.73029 * 22 21 16 25 25 N 1.31616 * 120.00824 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99613 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47016 * 89.99902 * 26 24 22 28 28 H 1.48497 * 109.47289 * 209.99686 * 26 24 22 29 29 H 1.48495 * 109.47118 * 330.00010 * 26 24 22 30 30 N 1.31494 * 119.55102 * 180.24762 * 2 1 3 31 31 H 1.09005 * 109.47295 * 90.00286 * 1 2 3 32 32 H 1.09005 * 109.46614 * 209.99865 * 1 2 3 33 33 H 1.08994 * 109.47690 * 329.99641 * 1 2 3 34 34 H 1.08002 * 120.32480 * 0.02562 * 3 2 1 35 35 H 1.08005 * 120.75790 * 180.27611 * 4 3 2 36 36 H 1.08002 * 120.47393 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.58636 * 246.15313 * 10 9 7 38 38 H 1.09002 * 109.59092 * 6.42953 * 10 9 7 39 39 H 1.09001 * 109.49841 * 174.58250 * 11 10 9 40 40 H 1.09003 * 109.49622 * 294.68314 * 11 10 9 41 41 H 1.09002 * 109.45823 * 58.65447 * 12 11 10 42 42 H 1.08996 * 109.45939 * 178.61706 * 12 11 10 43 43 H 1.09004 * 109.49740 * 181.31627 * 13 12 11 44 44 H 1.08998 * 109.49599 * 301.37535 * 13 12 11 45 45 H 1.09003 * 110.71602 * 259.97208 * 18 16 14 46 46 H 1.08997 * 110.72107 * 23.06630 * 18 16 14 47 47 H 1.09005 * 110.99951 * 82.56819 * 19 18 16 48 48 H 1.09000 * 111.00478 * 206.41937 * 19 18 16 49 49 H 1.09004 * 110.36096 * 155.84818 * 20 19 18 50 50 H 1.09000 * 110.36790 * 278.05482 * 20 19 18 51 51 H 0.96995 * 120.00561 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2011 0.0058 5 6 4.2334 -0.0196 0.0060 6 6 3.4822 -1.1923 0.0010 7 6 4.1694 -2.5049 0.0005 8 8 5.3787 -2.5577 -0.1052 9 7 3.4530 -3.6407 0.1175 10 6 1.9866 -3.6129 0.0314 11 6 1.5362 -4.6151 -1.0361 12 6 2.1212 -5.9927 -0.7159 13 6 3.6496 -5.9174 -0.7381 14 6 4.1242 -4.9307 0.3271 15 1 3.8742 -5.3162 1.3156 16 6 5.6387 -4.7455 0.2136 17 1 5.9414 -3.8388 0.7374 18 6 6.3635 -5.9670 0.8169 19 6 7.5616 -6.1715 -0.1476 20 6 6.9340 -5.7835 -1.5096 21 7 6.0275 -4.6624 -1.2018 22 6 5.6154 -3.7029 -2.0877 23 1 4.8349 -3.0103 -1.8092 24 6 6.2008 -3.6206 -3.3436 25 7 7.1516 -4.4649 -3.6833 26 14 5.6392 -2.3112 -4.5518 27 1 6.4536 -1.0835 -4.3652 28 1 5.8097 -2.8121 -5.9393 29 1 4.2079 -1.9971 -4.3113 30 7 2.1556 -1.1439 -0.0049 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 1.6484 2.1399 0.0004 35 1 4.1318 2.1273 0.0104 36 1 5.3126 -0.0607 0.0101 37 1 1.5587 -3.8887 0.9953 38 1 1.6554 -2.6111 -0.2420 39 1 0.4479 -4.6747 -1.0430 40 1 1.8895 -4.2882 -2.0141 41 1 1.7874 -6.3081 0.2727 42 1 1.7822 -6.7130 -1.4604 43 1 4.0654 -6.9039 -0.5331 44 1 3.9829 -5.5789 -1.7191 45 1 6.7135 -5.7482 1.8257 46 1 5.7118 -6.8407 0.8173 47 1 8.3859 -5.5052 0.1068 48 1 7.8882 -7.2114 -0.1499 49 1 7.7086 -5.4645 -2.2070 50 1 6.3751 -6.6231 -1.9227 51 1 7.5609 -4.4071 -4.5607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025198287.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:51 Heat of formation + Delta-G solvation = 101.657145 kcal Electronic energy + Delta-G solvation = -33209.917468 eV Core-core repulsion = 29305.934924 eV Total energy + Delta-G solvation = -3903.982544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.87374 -39.56367 -36.98245 -36.42567 -33.12341 -32.91918 -32.38905 -31.76846 -30.62418 -28.91925 -27.81651 -27.02572 -25.16322 -24.23917 -23.59554 -22.78018 -21.82359 -20.53128 -20.00657 -19.36156 -18.64512 -17.10008 -16.50537 -16.27985 -15.92188 -15.74684 -14.98083 -14.71151 -14.36422 -14.24318 -13.98631 -13.86840 -13.62460 -13.36651 -13.21269 -12.88451 -12.67788 -12.58494 -12.44150 -12.21865 -11.88808 -11.84451 -11.65304 -11.58546 -11.02835 -10.90783 -10.85059 -10.70701 -10.57345 -10.43777 -10.11790 -9.94992 -9.93858 -9.90438 -9.65329 -9.43860 -9.07368 -8.76682 -8.72167 -8.38299 -8.10065 -7.63183 -6.40963 -5.33007 -2.73580 0.81812 1.20887 3.16324 3.50235 3.54694 3.55440 3.55932 4.08908 4.14912 4.61978 4.69772 4.84350 4.97456 5.11127 5.26532 5.40004 5.44176 5.45240 5.47468 5.51417 5.58189 5.64241 5.69834 5.83129 5.88374 5.91967 5.94099 5.96865 6.07813 6.12198 6.15455 6.17070 6.22715 6.36199 6.44086 6.47092 6.54778 6.57634 6.66837 6.73871 6.77732 6.87929 6.96308 7.01943 7.27751 7.42231 7.64899 7.71820 7.79150 7.98684 8.14860 8.18485 8.70530 8.93128 9.53186 10.14962 10.81102 11.65239 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.005585 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.878847 B = 5012.501302 C = 5979.904820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.116 3.884 3 C -0.164 4.164 4 C -0.074 4.074 5 C -0.123 4.123 6 C 0.104 3.896 7 C 0.537 3.463 8 O -0.455 6.455 9 N -0.579 5.579 10 C 0.052 3.948 11 C -0.130 4.130 12 C -0.118 4.118 13 C -0.125 4.125 14 C 0.139 3.861 15 H 0.052 0.948 16 C 0.139 3.861 17 H 0.091 0.909 18 C -0.133 4.133 19 C -0.140 4.140 20 C 0.132 3.868 21 N -0.573 5.573 22 C -0.160 4.160 23 H 0.085 0.915 24 C -0.031 4.031 25 N -0.927 5.927 26 Si 0.898 3.102 27 H -0.293 1.293 28 H -0.295 1.295 29 H -0.288 1.288 30 N -0.451 5.451 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.150 0.850 37 H 0.044 0.956 38 H 0.165 0.835 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.122 0.878 50 H 0.000 1.000 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 6.477 10.381 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.023 4.023 3 C -0.184 4.184 4 C -0.100 4.100 5 C -0.143 4.143 6 C -0.034 4.034 7 C 0.323 3.677 8 O -0.328 6.328 9 N -0.312 5.312 10 C -0.071 4.071 11 C -0.168 4.168 12 C -0.156 4.156 13 C -0.163 4.163 14 C 0.034 3.966 15 H 0.069 0.931 16 C 0.032 3.968 17 H 0.108 0.892 18 C -0.171 4.171 19 C -0.179 4.179 20 C 0.008 3.992 21 N -0.295 5.295 22 C -0.289 4.289 23 H 0.102 0.898 24 C -0.224 4.224 25 N -0.580 5.580 26 Si 0.730 3.270 27 H -0.221 1.221 28 H -0.221 1.221 29 H -0.215 1.215 30 N -0.164 5.164 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.062 0.938 38 H 0.180 0.820 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.118 0.882 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.068 0.932 49 H 0.139 0.861 50 H 0.018 0.982 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.339 5.751 10.095 16.948 hybrid contribution -0.011 1.177 -0.755 1.399 sum -12.350 6.929 9.340 16.964 Atomic orbital electron populations 1.20735 0.88593 1.03515 1.03274 1.21536 0.97215 0.88645 0.94882 1.22035 0.95001 0.99074 1.02303 1.21613 0.94388 0.98319 0.95672 1.22141 1.02652 0.91651 0.97896 1.21788 0.89116 0.95524 0.96944 1.17680 0.86836 0.82687 0.80477 1.90978 1.12822 1.84814 1.44159 1.47597 1.06770 1.06108 1.70700 1.23377 0.79712 1.06457 0.97532 1.21866 0.99054 0.95701 1.00201 1.21549 0.97194 0.96742 1.00109 1.21836 0.93309 0.98207 1.02950 1.21934 0.96144 0.82389 0.96139 0.93061 1.21999 0.89028 0.96363 0.89443 0.89207 1.22690 0.98125 0.98446 0.97888 1.22917 0.96980 0.98966 0.99040 1.22280 0.95211 0.88648 0.93102 1.44327 1.53552 1.27700 1.03920 1.19421 1.12512 1.05475 0.91499 0.89754 1.24781 0.99669 0.99617 0.98310 1.69558 1.29695 1.38496 1.20212 0.86265 0.77523 0.82091 0.81072 1.22139 1.22125 1.21455 1.67172 1.08839 1.26832 1.13566 0.90261 0.90284 0.90726 0.84756 0.84319 0.83201 0.93796 0.81974 0.92274 0.91696 0.93314 0.92930 0.92529 0.88213 0.92960 0.92717 0.92547 0.93225 0.86120 0.98224 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.17 36.01 0.37 -0.48 16 2 C 0.12 1.38 6.78 -82.60 -0.56 0.82 16 3 C -0.16 -1.73 9.75 -39.32 -0.38 -2.11 16 4 C -0.07 -0.87 10.17 -39.31 -0.40 -1.27 16 5 C -0.12 -1.89 9.63 -39.05 -0.38 -2.26 16 6 C 0.10 1.80 6.69 -83.01 -0.56 1.25 16 7 C 0.54 10.93 5.36 -12.18 -0.07 10.87 16 8 O -0.46 -10.67 8.95 5.35 0.05 -10.63 16 9 N -0.58 -10.98 2.80 -166.46 -0.47 -11.44 16 10 C 0.05 0.84 6.06 -3.71 -0.02 0.81 16 11 C -0.13 -2.05 6.08 -26.61 -0.16 -2.21 16 12 C -0.12 -1.89 5.89 -26.69 -0.16 -2.05 16 13 C -0.12 -2.40 4.91 -26.83 -0.13 -2.54 16 14 C 0.14 2.68 2.48 -67.82 -0.17 2.51 16 15 H 0.05 0.91 8.06 -51.93 -0.42 0.49 16 16 C 0.14 3.02 2.31 -66.95 -0.15 2.87 16 17 H 0.09 2.14 5.15 -55.78 -0.29 1.86 16 18 C -0.13 -2.53 6.32 -24.90 -0.16 -2.69 16 19 C -0.14 -2.91 7.09 -24.58 -0.17 -3.08 16 20 C 0.13 3.34 6.25 -2.53 -0.02 3.32 16 21 N -0.57 -14.60 1.89 -162.58 -0.31 -14.91 16 22 C -0.16 -4.46 6.88 -15.06 -0.10 -4.57 16 23 H 0.09 2.34 4.09 -52.49 -0.21 2.12 16 24 C -0.03 -0.91 5.48 -17.43 -0.10 -1.00 16 25 N -0.93 -28.01 10.02 55.49 0.56 -27.46 16 26 Si 0.90 23.55 29.55 -169.99 -5.02 18.53 16 27 H -0.29 -7.73 7.11 56.52 0.40 -7.32 16 28 H -0.29 -7.78 7.11 56.52 0.40 -7.38 16 29 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 30 N -0.45 -6.79 5.86 -6.06 -0.04 -6.83 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 35 H 0.14 1.19 8.06 -52.48 -0.42 0.77 16 36 H 0.15 2.37 7.65 -52.49 -0.40 1.96 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.17 2.58 3.63 -99.14 -0.36 2.22 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.06 7.26 -51.93 -0.38 0.69 16 44 H 0.10 2.38 6.16 -51.93 -0.32 2.06 16 45 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.05 0.97 6.94 -51.93 -0.36 0.61 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.12 3.47 5.34 -51.93 -0.28 3.20 16 50 H 0.00 0.00 8.14 -51.93 -0.42 -0.43 16 51 H 0.24 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -32.50 375.03 -10.96 -43.46 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.07 Total: 5.42 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.32 Total: -1.80 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.25 Total: -60.64 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.05 Total: -10.63 kcal Atomic # 14 Polarization: 23.55 SS G_CDS: -5.02 Total: 18.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.50 -10.96 -43.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025198287.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.122 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds