Wall clock time and date at job start Wed Apr 1 2020 02:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38604 * 119.54529 * 2 1 4 4 C 1.38578 * 119.34912 * 179.72307 * 3 2 1 5 5 C 1.38630 * 118.48983 * 0.25684 * 4 3 2 6 6 C 1.39266 * 119.06147 * 359.97438 * 5 4 3 7 7 C 1.48165 * 119.72331 * 179.97438 * 6 5 4 8 8 O 1.21514 * 120.00424 * 354.01300 * 7 6 5 9 9 N 1.34785 * 119.99941 * 174.00834 * 7 6 5 10 10 C 1.46919 * 120.62926 * 9.78813 * 9 7 6 11 11 C 1.53192 * 108.77824 * 126.36354 * 10 9 7 12 12 C 1.53045 * 109.31355 * 54.63227 * 11 10 9 13 13 C 1.53041 * 109.53525 * 298.63779 * 12 11 10 14 14 C 1.46921 * 120.62781 * 189.49892 * 9 7 6 15 15 H 1.09004 * 109.58391 * 113.84958 * 14 9 7 16 16 C 1.53000 * 109.59117 * 353.42598 * 14 9 7 17 17 H 1.08998 * 109.87430 * 42.91081 * 16 14 9 18 18 C 1.54320 * 109.88349 * 163.93025 * 16 14 9 19 19 C 1.55158 * 102.94406 * 141.60918 * 18 16 14 20 20 C 1.54908 * 101.57811 * 324.49675 * 19 18 16 21 21 N 1.47022 * 109.88112 * 281.73547 * 16 14 9 22 22 C 1.36943 * 125.64565 * 61.61761 * 21 16 14 23 23 H 1.07992 * 120.00392 * 350.72779 * 22 21 16 24 24 C 1.38813 * 119.99334 * 170.73029 * 22 21 16 25 25 N 1.31616 * 120.00824 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99613 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47016 * 89.99902 * 26 24 22 28 28 H 1.48497 * 109.47289 * 209.99686 * 26 24 22 29 29 H 1.48495 * 109.47118 * 330.00010 * 26 24 22 30 30 N 1.31494 * 119.55102 * 180.24762 * 2 1 3 31 31 H 1.09005 * 109.47295 * 90.00286 * 1 2 3 32 32 H 1.09005 * 109.46614 * 209.99865 * 1 2 3 33 33 H 1.08994 * 109.47690 * 329.99641 * 1 2 3 34 34 H 1.08002 * 120.32480 * 0.02562 * 3 2 1 35 35 H 1.08005 * 120.75790 * 180.27611 * 4 3 2 36 36 H 1.08002 * 120.47393 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.58636 * 246.15313 * 10 9 7 38 38 H 1.09002 * 109.59092 * 6.42953 * 10 9 7 39 39 H 1.09001 * 109.49841 * 174.58250 * 11 10 9 40 40 H 1.09003 * 109.49622 * 294.68314 * 11 10 9 41 41 H 1.09002 * 109.45823 * 58.65447 * 12 11 10 42 42 H 1.08996 * 109.45939 * 178.61706 * 12 11 10 43 43 H 1.09004 * 109.49740 * 181.31627 * 13 12 11 44 44 H 1.08998 * 109.49599 * 301.37535 * 13 12 11 45 45 H 1.09003 * 110.71602 * 259.97208 * 18 16 14 46 46 H 1.08997 * 110.72107 * 23.06630 * 18 16 14 47 47 H 1.09005 * 110.99951 * 82.56819 * 19 18 16 48 48 H 1.09000 * 111.00478 * 206.41937 * 19 18 16 49 49 H 1.09004 * 110.36096 * 155.84818 * 20 19 18 50 50 H 1.09000 * 110.36790 * 278.05482 * 20 19 18 51 51 H 0.96995 * 120.00561 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1905 1.2058 0.0000 4 6 3.5763 1.2011 0.0058 5 6 4.2334 -0.0196 0.0060 6 6 3.4822 -1.1923 0.0010 7 6 4.1694 -2.5049 0.0005 8 8 5.3787 -2.5577 -0.1052 9 7 3.4530 -3.6407 0.1175 10 6 1.9866 -3.6129 0.0314 11 6 1.5362 -4.6151 -1.0361 12 6 2.1212 -5.9927 -0.7159 13 6 3.6496 -5.9174 -0.7381 14 6 4.1242 -4.9307 0.3271 15 1 3.8742 -5.3162 1.3156 16 6 5.6387 -4.7455 0.2136 17 1 5.9414 -3.8388 0.7374 18 6 6.3635 -5.9670 0.8169 19 6 7.5616 -6.1715 -0.1476 20 6 6.9340 -5.7835 -1.5096 21 7 6.0275 -4.6624 -1.2018 22 6 5.6154 -3.7029 -2.0877 23 1 4.8349 -3.0103 -1.8092 24 6 6.2008 -3.6206 -3.3436 25 7 7.1516 -4.4649 -3.6833 26 14 5.6392 -2.3112 -4.5518 27 1 6.4536 -1.0835 -4.3652 28 1 5.8097 -2.8121 -5.9393 29 1 4.2079 -1.9971 -4.3113 30 7 2.1556 -1.1439 -0.0049 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 1.6484 2.1399 0.0004 35 1 4.1318 2.1273 0.0104 36 1 5.3126 -0.0607 0.0101 37 1 1.5587 -3.8887 0.9953 38 1 1.6554 -2.6111 -0.2420 39 1 0.4479 -4.6747 -1.0430 40 1 1.8895 -4.2882 -2.0141 41 1 1.7874 -6.3081 0.2727 42 1 1.7822 -6.7130 -1.4604 43 1 4.0654 -6.9039 -0.5331 44 1 3.9829 -5.5789 -1.7191 45 1 6.7135 -5.7482 1.8257 46 1 5.7118 -6.8407 0.8173 47 1 8.3859 -5.5052 0.1068 48 1 7.8882 -7.2114 -0.1499 49 1 7.7086 -5.4645 -2.2070 50 1 6.3751 -6.6231 -1.9227 51 1 7.5609 -4.4071 -4.5607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025198287.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:50 Heat of formation + Delta-G solvation = 82.937581 kcal Electronic energy + Delta-G solvation = -33210.729209 eV Core-core repulsion = 29305.934924 eV Total energy + Delta-G solvation = -3904.794285 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.20611 -40.84809 -38.60398 -37.99991 -34.46958 -34.23071 -33.94592 -33.11134 -32.07645 -30.90843 -28.88804 -28.44292 -26.70747 -26.08495 -24.89420 -24.04937 -23.03052 -21.91718 -21.80000 -20.99020 -20.11521 -18.93888 -17.90810 -17.61792 -17.41308 -16.93171 -16.46086 -16.10129 -16.03087 -15.65559 -15.45130 -15.24857 -15.02131 -14.71143 -14.65239 -14.28085 -14.00527 -13.87550 -13.69638 -13.51286 -13.33428 -13.13570 -13.02408 -12.88727 -12.84877 -12.81388 -12.59873 -12.35097 -12.10574 -11.92099 -11.84193 -11.62565 -11.53095 -11.40774 -11.14999 -10.99994 -10.88435 -10.57976 -10.14925 -9.87846 -9.48121 -9.21042 -8.44495 -7.50764 -4.92658 -0.27698 0.22958 1.33539 1.36494 1.42408 1.89425 2.19165 2.56518 2.87768 3.07038 3.50198 3.69286 3.84307 3.85825 4.03383 4.05225 4.06927 4.11646 4.16145 4.23463 4.31557 4.38446 4.40636 4.46645 4.54329 4.63962 4.69375 4.74214 4.79920 4.88257 4.91648 4.94635 5.03354 5.09833 5.12460 5.16197 5.19483 5.21223 5.22603 5.25231 5.27479 5.37801 5.46229 5.63625 5.68734 5.77891 5.82224 5.85256 6.04091 6.17668 6.57704 6.64546 6.81316 7.35879 7.43730 8.06297 8.68908 9.45911 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010505 B = 0.005585 C = 0.004681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.878847 B = 5012.501302 C = 5979.904820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.109 3.891 3 C -0.145 4.145 4 C -0.070 4.070 5 C -0.143 4.143 6 C 0.069 3.931 7 C 0.531 3.469 8 O -0.506 6.506 9 N -0.582 5.582 10 C 0.049 3.951 11 C -0.126 4.126 12 C -0.112 4.112 13 C -0.117 4.117 14 C 0.140 3.860 15 H 0.079 0.921 16 C 0.131 3.869 17 H 0.072 0.928 18 C -0.122 4.122 19 C -0.129 4.129 20 C 0.132 3.868 21 N -0.581 5.581 22 C -0.137 4.137 23 H 0.084 0.916 24 C -0.101 4.101 25 N -0.959 5.959 26 Si 0.947 3.053 27 H -0.297 1.297 28 H -0.298 1.298 29 H -0.284 1.284 30 N -0.463 5.463 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.181 0.819 35 H 0.172 0.828 36 H 0.130 0.870 37 H 0.066 0.934 38 H 0.171 0.829 39 H 0.094 0.906 40 H 0.028 0.972 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.048 0.952 48 H 0.077 0.923 49 H 0.084 0.916 50 H -0.019 1.019 51 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.393 7.902 12.852 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.031 4.031 3 C -0.164 4.164 4 C -0.096 4.096 5 C -0.164 4.164 6 C -0.067 4.067 7 C 0.319 3.681 8 O -0.382 6.382 9 N -0.314 5.314 10 C -0.073 4.073 11 C -0.164 4.164 12 C -0.150 4.150 13 C -0.156 4.156 14 C 0.035 3.965 15 H 0.097 0.903 16 C 0.025 3.975 17 H 0.089 0.911 18 C -0.160 4.160 19 C -0.167 4.167 20 C 0.007 3.993 21 N -0.303 5.303 22 C -0.268 4.268 23 H 0.102 0.898 24 C -0.289 4.289 25 N -0.615 5.615 26 Si 0.780 3.220 27 H -0.225 1.225 28 H -0.226 1.226 29 H -0.210 1.210 30 N -0.176 5.176 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.199 0.801 35 H 0.190 0.810 36 H 0.148 0.852 37 H 0.084 0.916 38 H 0.185 0.815 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.092 0.908 47 H 0.067 0.933 48 H 0.096 0.904 49 H 0.102 0.898 50 H -0.001 1.001 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -16.172 7.170 12.607 21.722 hybrid contribution 1.002 0.869 -1.375 1.911 sum -15.170 8.039 11.231 20.516 Atomic orbital electron populations 1.20875 0.85496 1.05208 1.04266 1.22315 0.99159 0.88255 0.93358 1.22585 0.94471 1.00461 0.98870 1.22009 0.95400 0.97900 0.94266 1.22166 1.01966 0.92972 0.99275 1.21362 0.90411 0.94317 1.00610 1.18249 0.86672 0.84176 0.79008 1.90940 1.14694 1.85820 1.46792 1.47816 1.08097 1.05655 1.69836 1.23615 0.77857 1.07188 0.98650 1.21850 1.01098 0.95332 0.98124 1.21516 0.94351 0.97154 1.01939 1.21678 0.96042 0.97950 0.99884 1.21824 0.94282 0.82980 0.97385 0.90285 1.22077 0.91277 0.97030 0.87095 0.91147 1.22669 0.97105 0.97841 0.98400 1.22765 0.97179 1.00305 0.96498 1.22050 0.94168 0.87976 0.95102 1.44482 1.53432 1.27030 1.05367 1.19643 1.11032 1.04696 0.91384 0.89811 1.25407 1.01259 1.02051 1.00225 1.69826 1.31591 1.40291 1.19804 0.85446 0.77100 0.80164 0.79312 1.22494 1.22556 1.21036 1.66981 1.07551 1.28795 1.14250 0.89413 0.90182 0.87553 0.80131 0.81022 0.85207 0.91586 0.81451 0.88728 0.95330 0.90498 0.92248 0.92244 0.93558 0.90293 0.90809 0.93306 0.90450 0.89845 1.00071 0.95664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 10.17 71.24 0.72 -0.46 16 2 C 0.11 2.21 6.78 42.70 0.29 2.50 16 3 C -0.14 -2.41 9.75 22.44 0.22 -2.19 16 4 C -0.07 -1.47 10.17 22.44 0.23 -1.24 16 5 C -0.14 -4.43 9.63 22.61 0.22 -4.22 16 6 C 0.07 2.41 6.69 41.89 0.28 2.69 16 7 C 0.53 22.34 5.36 86.88 0.47 22.81 16 8 O -0.51 -25.13 8.95 -3.76 -0.03 -25.16 16 9 N -0.58 -22.05 2.80 -798.85 -2.24 -24.29 16 10 C 0.05 1.47 6.06 86.36 0.52 2.00 16 11 C -0.13 -3.76 6.08 30.67 0.19 -3.57 16 12 C -0.11 -3.35 5.89 30.62 0.18 -3.17 16 13 C -0.12 -4.49 4.91 30.53 0.15 -4.34 16 14 C 0.14 5.33 2.48 44.83 0.11 5.44 16 15 H 0.08 2.60 8.06 -2.38 -0.02 2.58 16 16 C 0.13 5.82 2.31 45.34 0.10 5.92 16 17 H 0.07 3.49 5.15 -63.41 -0.33 3.17 16 18 C -0.12 -4.49 6.32 31.78 0.20 -4.28 16 19 C -0.13 -5.36 7.09 31.99 0.23 -5.13 16 20 C 0.13 7.02 6.25 86.86 0.54 7.57 16 21 N -0.58 -31.13 1.89 -668.28 -1.26 -32.40 16 22 C -0.14 -8.09 6.88 84.03 0.58 -7.51 16 23 H 0.08 4.92 4.09 -2.91 -0.01 4.90 16 24 C -0.10 -6.25 5.48 84.86 0.47 -5.79 16 25 N -0.96 -61.98 10.02 21.65 0.22 -61.76 16 26 Si 0.95 51.17 29.55 68.60 2.03 53.20 16 27 H -0.30 -15.92 7.11 99.48 0.71 -15.22 16 28 H -0.30 -16.11 7.11 99.48 0.71 -15.40 16 29 H -0.28 -14.87 7.11 99.48 0.71 -14.17 16 30 N -0.46 -13.21 5.86 -173.08 -1.01 -14.23 16 31 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.11 0.60 8.08 -2.39 -0.02 0.58 16 34 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 36 H 0.13 4.42 7.65 -2.91 -0.02 4.40 16 37 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.17 5.05 3.63 -95.61 -0.35 4.71 16 39 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 2.19 7.26 -2.38 -0.02 2.18 16 44 H 0.05 2.29 6.16 -2.39 -0.01 2.28 16 45 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 46 H 0.07 2.44 6.94 -2.39 -0.02 2.43 16 47 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 48 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 49 H 0.08 5.15 5.34 -2.38 -0.01 5.14 16 50 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 51 H 0.23 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -79.35 375.03 3.67 -75.68 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.28 Total: 21.93 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 5.69 Total: 7.02 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -4.30 Total: -132.67 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.03 Total: -25.16 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.03 Total: 53.20 kcal Total: -79.35 3.67 -75.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025198287.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.620 kcal (2) G-P(sol) polarization free energy of solvation -79.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds