Wall clock time and date at job start Wed Apr 1 2020 02:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38356 * 120.34899 * 2 1 4 4 N 1.31920 * 121.07946 * 179.97438 * 3 2 1 5 5 C 1.31696 * 121.88054 * 359.68034 * 4 3 2 6 6 C 1.39524 * 120.56494 * 0.58614 * 5 4 3 7 7 C 1.47840 * 120.55980 * 179.73077 * 6 5 4 8 8 O 1.21552 * 119.99960 * 206.20161 * 7 6 5 9 9 N 1.34780 * 120.00011 * 26.19883 * 7 6 5 10 10 C 1.46927 * 120.62910 * 7.40904 * 9 7 6 11 11 C 1.53192 * 108.77081 * 233.62727 * 10 9 7 12 12 C 1.53036 * 109.31324 * 305.36348 * 11 10 9 13 13 C 1.53039 * 109.53678 * 61.36887 * 12 11 10 14 14 C 1.46923 * 120.62909 * 187.42498 * 9 7 6 15 15 H 1.09000 * 109.70599 * 246.23071 * 14 9 7 16 16 C 1.52999 * 109.58799 * 6.58896 * 14 9 7 17 17 H 1.09001 * 109.99817 * 33.86811 * 16 14 9 18 18 C 1.54337 * 109.98925 * 272.82977 * 16 14 9 19 19 C 1.55159 * 103.02218 * 218.66461 * 18 16 14 20 20 C 1.54912 * 101.57760 * 35.30772 * 19 18 16 21 21 N 1.47025 * 109.88202 * 154.96749 * 16 14 9 22 22 C 1.36936 * 125.64485 * 298.38552 * 21 16 14 23 23 H 1.07998 * 120.00107 * 38.92870 * 22 21 16 24 24 C 1.38809 * 120.00113 * 218.91463 * 22 21 16 25 25 N 1.31618 * 120.00110 * 183.63897 * 24 22 21 26 26 Si 1.86798 * 120.00062 * 3.65139 * 24 22 21 27 27 H 1.48503 * 109.47144 * 276.48712 * 26 24 22 28 28 H 1.48506 * 109.47184 * 36.48259 * 26 24 22 29 29 H 1.48496 * 109.47469 * 156.48726 * 26 24 22 30 30 C 1.38354 * 120.34524 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47083 * 270.02500 * 1 2 3 32 32 H 1.09003 * 109.46510 * 30.02093 * 1 2 3 33 33 H 1.09001 * 109.46971 * 150.02178 * 1 2 3 34 34 H 1.08002 * 119.45888 * 359.97438 * 3 2 1 35 35 H 1.08003 * 119.71840 * 180.28970 * 5 4 3 36 36 H 1.09002 * 109.58833 * 113.84033 * 10 9 7 37 37 H 1.08994 * 109.58978 * 353.41312 * 10 9 7 38 38 H 1.09008 * 109.49250 * 185.41779 * 11 10 9 39 39 H 1.08993 * 109.52741 * 65.33681 * 11 10 9 40 40 H 1.09002 * 109.46067 * 301.34417 * 12 11 10 41 41 H 1.09002 * 109.44750 * 181.38360 * 12 11 10 42 42 H 1.09002 * 109.49234 * 178.68147 * 13 12 11 43 43 H 1.08994 * 109.49737 * 58.58663 * 13 12 11 44 44 H 1.09006 * 110.84737 * 100.19545 * 18 16 14 45 45 H 1.08995 * 110.66902 * 337.05301 * 18 16 14 46 46 H 1.08998 * 111.00321 * 277.23307 * 19 18 16 47 47 H 1.08996 * 111.00046 * 153.38068 * 19 18 16 48 48 H 1.09003 * 110.36235 * 204.14740 * 20 19 18 49 49 H 1.08999 * 110.45982 * 81.87920 * 20 19 18 50 50 H 0.97002 * 120.00188 * 180.02562 * 25 24 22 51 51 H 1.07993 * 120.85857 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2061 1.1940 0.0000 4 7 3.5252 1.2108 0.0005 5 6 4.2350 0.1015 0.0073 6 6 3.6054 -1.1437 0.0019 7 6 4.4023 -2.3889 0.0035 8 8 3.9367 -3.4091 -0.4654 9 7 5.6452 -2.3929 0.5249 10 6 6.1613 -1.2170 1.2388 11 6 7.4995 -0.8094 0.6145 12 6 8.4463 -2.0117 0.6169 13 6 7.8441 -3.1390 -0.2249 14 6 6.5098 -3.5731 0.3898 15 1 6.6858 -4.0140 1.3710 16 6 5.8358 -4.6012 -0.5210 17 1 5.2593 -4.0931 -1.2941 18 6 4.9071 -5.5127 0.3088 19 6 5.1182 -6.9076 -0.3370 20 6 6.6208 -6.8535 -0.7097 21 7 6.8530 -5.4630 -1.1408 22 6 7.8537 -5.0428 -1.9758 23 1 8.3622 -4.1099 -1.7824 24 6 8.2147 -5.8161 -3.0705 25 7 9.2236 -5.4487 -3.8318 26 14 7.2685 -7.3780 -3.4636 27 1 7.7951 -8.4962 -2.6403 28 1 5.8292 -7.1746 -3.1596 29 1 7.4290 -7.7050 -4.9032 30 6 2.2060 -1.1940 0.0005 31 1 -0.3633 0.0004 1.0276 32 1 -0.3632 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6630 2.1275 -0.0004 35 1 5.3136 0.1560 0.0122 36 1 6.3086 -1.4635 2.2904 37 1 5.4512 -0.3949 1.1501 38 1 7.9397 0.0015 1.1950 39 1 7.3369 -0.4763 -0.4105 40 1 8.5894 -2.3592 1.6401 41 1 9.4075 -1.7175 0.1956 42 1 8.5296 -3.9863 -0.2420 43 1 7.6778 -2.7844 -1.2421 44 1 3.8680 -5.1971 0.2140 45 1 5.2118 -5.5220 1.3552 46 1 4.4990 -7.0241 -1.2264 47 1 4.9221 -7.7041 0.3808 48 1 6.8345 -7.5444 -1.5253 49 1 7.2372 -7.0896 0.1577 50 1 9.4756 -5.9888 -4.5971 51 1 1.6858 -2.1404 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025214964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:54 Heat of formation + Delta-G solvation = 102.201403 kcal Electronic energy + Delta-G solvation = -32222.100871 eV Core-core repulsion = 28318.141928 eV Total energy + Delta-G solvation = -3903.958943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.23111 -39.79348 -37.49124 -37.03118 -34.05413 -33.07122 -32.65258 -32.07031 -31.09521 -29.70419 -27.88796 -27.36714 -25.35241 -24.47254 -24.10628 -22.72217 -22.41331 -21.15098 -20.25387 -19.45822 -19.06502 -17.52958 -17.32938 -16.72206 -16.27018 -15.99379 -15.65393 -14.78267 -14.71792 -14.50356 -14.25621 -13.96455 -13.72689 -13.52716 -13.30975 -13.11489 -12.98062 -12.88367 -12.77067 -12.67316 -12.37470 -12.30563 -12.17088 -11.88759 -11.33681 -11.20832 -10.96096 -10.92056 -10.87698 -10.56627 -10.40881 -10.18602 -10.06694 -9.88604 -9.82367 -9.59769 -9.38208 -9.11319 -9.01985 -8.66509 -8.40672 -8.22138 -6.58590 -5.85480 -3.37065 0.54539 0.98723 2.86780 3.11116 3.38603 3.52906 3.59152 3.63642 4.14159 4.40267 4.52085 4.61178 4.66423 4.72508 4.83226 4.89959 5.01047 5.14918 5.21998 5.25913 5.32178 5.33990 5.42839 5.47950 5.56840 5.60190 5.64952 5.67860 5.69775 5.82280 5.84450 5.92399 5.96432 6.04368 6.07224 6.23765 6.24469 6.32805 6.35579 6.39087 6.50840 6.59406 6.65422 6.74835 6.80672 7.00123 7.04623 7.22077 7.45594 7.62033 7.65560 8.09257 8.36083 8.49136 8.96297 9.77008 10.39626 11.26567 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013534 B = 0.003906 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.347533 B = 7166.040951 C = 8041.474623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.146 4.146 3 C 0.110 3.890 4 N -0.484 5.484 5 C 0.100 3.900 6 C -0.170 4.170 7 C 0.550 3.450 8 O -0.506 6.506 9 N -0.594 5.594 10 C 0.068 3.932 11 C -0.137 4.137 12 C -0.125 4.125 13 C -0.127 4.127 14 C 0.142 3.858 15 H 0.058 0.942 16 C 0.155 3.845 17 H 0.087 0.913 18 C -0.112 4.112 19 C -0.137 4.137 20 C 0.113 3.887 21 N -0.607 5.607 22 C -0.269 4.269 23 H 0.117 0.883 24 C 0.031 3.969 25 N -0.915 5.915 26 Si 0.901 3.099 27 H -0.289 1.289 28 H -0.271 1.271 29 H -0.310 1.310 30 C -0.025 4.025 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.157 0.843 35 H 0.185 0.815 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.110 0.890 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.048 0.952 46 H 0.063 0.937 47 H 0.058 0.942 48 H 0.037 0.963 49 H 0.025 0.975 50 H 0.262 0.738 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.150 12.214 12.636 21.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.148 4.148 3 C -0.047 4.047 4 N -0.191 5.191 5 C -0.056 4.056 6 C -0.175 4.175 7 C 0.338 3.662 8 O -0.384 6.384 9 N -0.327 5.327 10 C -0.055 4.055 11 C -0.175 4.175 12 C -0.162 4.162 13 C -0.164 4.164 14 C 0.038 3.962 15 H 0.076 0.924 16 C 0.049 3.951 17 H 0.104 0.896 18 C -0.150 4.150 19 C -0.176 4.176 20 C -0.011 4.011 21 N -0.333 5.333 22 C -0.396 4.396 23 H 0.134 0.866 24 C -0.168 4.168 25 N -0.558 5.558 26 Si 0.735 3.265 27 H -0.217 1.217 28 H -0.197 1.197 29 H -0.239 1.239 30 C -0.051 4.051 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.174 0.826 35 H 0.201 0.799 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.128 0.872 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.066 0.934 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.054 0.946 49 H 0.043 0.957 50 H 0.072 0.928 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.771 12.447 12.168 21.589 hybrid contribution -0.644 -1.761 -0.192 1.885 sum -13.415 10.686 11.975 20.918 Atomic orbital electron populations 1.20727 0.89766 1.03429 1.02714 1.20917 0.97891 0.93835 1.02119 1.22863 0.90088 0.97551 0.94148 1.67775 1.07994 1.30968 1.12396 1.23802 1.01349 0.86950 0.93518 1.21239 0.95226 0.95519 1.05549 1.18040 0.81513 0.87284 0.79354 1.90780 1.69912 1.31890 1.45786 1.48055 1.13508 1.16496 1.54603 1.22702 0.97130 0.89325 0.96328 1.21948 0.95249 0.98823 1.01499 1.21668 0.98441 0.95719 1.00405 1.22638 0.96190 0.98675 0.98899 1.22177 0.90249 0.84467 0.99270 0.92361 1.21730 0.88097 0.90751 0.94552 0.89561 1.22700 1.00827 0.94334 0.97109 1.22780 0.97757 0.97103 0.99926 1.21962 0.93262 0.89257 0.96652 1.44868 1.32439 1.01679 1.54344 1.19562 1.09407 1.09225 1.01409 0.86633 1.25523 0.97259 0.98947 0.95108 1.69719 1.28567 1.39484 1.18018 0.86638 0.81539 0.83598 0.74765 1.21739 1.19678 1.23897 1.21597 0.92415 0.98888 0.92194 0.90784 0.91010 0.91011 0.82553 0.79891 0.91461 0.87457 0.91094 0.91318 0.92665 0.91783 0.87236 0.90251 0.89831 0.93374 0.91843 0.92363 0.94576 0.95696 0.92812 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.03 36.01 0.36 -0.32 16 2 C -0.15 -1.37 5.89 -104.53 -0.62 -1.98 16 3 C 0.11 1.07 10.85 -17.47 -0.19 0.88 16 4 N -0.48 -5.70 10.35 -17.53 -0.18 -5.88 16 5 C 0.10 1.21 8.77 -17.13 -0.15 1.06 16 6 C -0.17 -2.25 5.62 -104.82 -0.59 -2.84 16 7 C 0.55 8.76 7.22 -12.33 -0.09 8.67 16 8 O -0.51 -9.47 10.03 5.32 0.05 -9.42 16 9 N -0.59 -8.95 2.97 -166.33 -0.49 -9.44 16 10 C 0.07 0.78 5.56 -3.71 -0.02 0.76 16 11 C -0.14 -1.59 5.66 -26.61 -0.15 -1.74 16 12 C -0.12 -1.76 5.88 -26.69 -0.16 -1.92 16 13 C -0.13 -2.33 3.30 -26.61 -0.09 -2.42 16 14 C 0.14 2.53 2.87 -67.60 -0.19 2.33 16 15 H 0.06 1.02 7.50 -51.93 -0.39 0.63 16 16 C 0.15 3.25 2.41 -66.94 -0.16 3.09 16 17 H 0.09 2.07 5.37 -53.90 -0.29 1.78 16 18 C -0.11 -2.11 5.74 -24.89 -0.14 -2.25 16 19 C -0.14 -2.69 7.09 -24.58 -0.17 -2.86 16 20 C 0.11 2.57 6.03 -2.53 -0.02 2.55 16 21 N -0.61 -14.70 2.55 -162.57 -0.41 -15.11 16 22 C -0.27 -7.35 8.56 -15.06 -0.13 -7.48 16 23 H 0.12 3.18 3.96 -52.49 -0.21 2.97 16 24 C 0.03 0.91 5.50 -17.43 -0.10 0.82 16 25 N -0.92 -28.04 13.97 55.49 0.78 -27.26 16 26 Si 0.90 23.73 24.60 -169.99 -4.18 19.55 16 27 H -0.29 -7.43 6.79 56.52 0.38 -7.05 16 28 H -0.27 -7.11 6.69 56.52 0.38 -6.73 16 29 H -0.31 -8.30 7.11 56.52 0.40 -7.90 16 30 C -0.02 -0.28 9.40 -38.87 -0.37 -0.65 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.16 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.18 2.03 4.36 -52.48 -0.23 1.81 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.11 1.11 3.10 -62.16 -0.19 0.91 16 38 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.07 0.85 7.77 -51.93 -0.40 0.45 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.11 2.35 5.83 -51.93 -0.30 2.05 16 43 H 0.08 1.69 6.72 -51.93 -0.35 1.34 16 44 H 0.08 1.57 6.02 -51.93 -0.31 1.26 16 45 H 0.05 0.84 7.45 -51.93 -0.39 0.45 16 46 H 0.06 1.31 7.96 -51.93 -0.41 0.89 16 47 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.04 0.90 2.48 -51.93 -0.13 0.77 16 49 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 51 H 0.14 1.60 7.94 -52.49 -0.42 1.18 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -32.34 367.44 -9.29 -41.64 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.42 Total: 4.67 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.97 Total: -4.28 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.31 Total: -57.69 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.05 Total: -9.42 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -4.18 Total: 19.55 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.34 -9.29 -41.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025214964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.837 kcal (2) G-P(sol) polarization free energy of solvation -32.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds