Wall clock time and date at job start Wed Apr 1 2020 02:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38355 * 120.34752 * 2 1 4 4 N 1.31929 * 121.07856 * 180.02562 * 3 2 1 5 5 C 1.31695 * 121.87686 * 359.97438 * 4 3 2 6 6 C 1.39522 * 120.57221 * 0.02562 * 5 4 3 7 7 C 1.47834 * 120.56128 * 179.97438 * 6 5 4 8 8 O 1.21561 * 119.99896 * 164.61130 * 7 6 5 9 9 N 1.34780 * 120.00402 * 344.61564 * 7 6 5 10 10 C 1.46921 * 120.62417 * 350.77580 * 9 7 6 11 11 C 1.53193 * 108.77603 * 233.58421 * 10 9 7 12 12 C 1.53046 * 109.31232 * 305.37058 * 11 10 9 13 13 C 1.53036 * 109.53921 * 61.35821 * 12 11 10 14 14 C 1.46924 * 120.63236 * 170.75085 * 9 7 6 15 15 H 1.09003 * 109.70249 * 246.27354 * 14 9 7 16 16 C 1.52999 * 109.58595 * 6.62583 * 14 9 7 17 17 H 1.08999 * 109.87572 * 308.65836 * 16 14 9 18 18 C 1.54328 * 109.88230 * 69.83308 * 16 14 9 19 19 C 1.55158 * 102.94467 * 141.60781 * 18 16 14 20 20 C 1.54914 * 101.57753 * 324.49629 * 19 18 16 21 21 N 1.47021 * 109.88214 * 187.63710 * 16 14 9 22 22 C 1.36941 * 125.64531 * 61.60951 * 21 16 14 23 23 H 1.07997 * 120.00140 * 14.70562 * 22 21 16 24 24 C 1.38813 * 119.99592 * 194.70891 * 22 21 16 25 25 N 1.31620 * 120.00391 * 0.02562 * 24 22 21 26 26 Si 1.86809 * 119.99714 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46905 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.46749 * 120.00204 * 26 24 22 29 29 H 1.48492 * 109.46997 * 240.00309 * 26 24 22 30 30 C 1.38359 * 120.34725 * 180.29817 * 2 1 3 31 31 H 1.09005 * 109.46944 * 90.00524 * 1 2 3 32 32 H 1.08999 * 109.47165 * 209.99879 * 1 2 3 33 33 H 1.08996 * 109.47349 * 330.00192 * 1 2 3 34 34 H 1.07993 * 119.45968 * 0.04415 * 3 2 1 35 35 H 1.08005 * 119.71240 * 180.02562 * 5 4 3 36 36 H 1.08995 * 109.59272 * 353.37381 * 10 9 7 37 37 H 1.09006 * 109.58356 * 113.80096 * 10 9 7 38 38 H 1.08996 * 109.49802 * 65.31741 * 11 10 9 39 39 H 1.09004 * 109.50122 * 185.41894 * 11 10 9 40 40 H 1.09007 * 109.45787 * 301.34337 * 12 11 10 41 41 H 1.08993 * 109.45896 * 181.38471 * 12 11 10 42 42 H 1.08999 * 109.49799 * 178.68350 * 13 12 11 43 43 H 1.09003 * 109.49547 * 58.58949 * 13 12 11 44 44 H 1.09000 * 110.71602 * 259.97369 * 18 16 14 45 45 H 1.09000 * 110.71816 * 23.24559 * 18 16 14 46 46 H 1.08998 * 111.00403 * 206.42476 * 19 18 16 47 47 H 1.08993 * 111.00268 * 82.57204 * 19 18 16 48 48 H 1.08993 * 110.36803 * 278.16813 * 20 19 18 49 49 H 1.09003 * 110.36129 * 155.84905 * 20 19 18 50 50 H 0.97003 * 120.00152 * 180.02562 * 25 24 22 51 51 H 1.07998 * 120.85830 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2349 0.1014 -0.0005 6 6 3.6054 -1.1437 -0.0006 7 6 4.4023 -2.3889 -0.0011 8 8 3.8751 -3.4480 0.2782 9 7 5.7133 -2.3499 -0.3113 10 6 6.3202 -1.1225 -0.8442 11 6 7.0401 -1.4570 -2.1544 12 6 8.0341 -2.5947 -1.9095 13 6 7.2800 -3.8412 -1.4407 14 6 6.5628 -3.5336 -0.1225 15 1 7.2991 -3.3370 0.6569 16 6 5.6958 -4.7281 0.2807 17 1 5.0589 -4.4563 1.1224 18 6 4.8286 -5.1745 -0.9153 19 6 4.8403 -6.7214 -0.7948 20 6 6.2761 -6.9819 -0.2748 21 7 6.5516 -5.8657 0.6480 22 6 7.4556 -5.8850 1.6765 23 1 7.4235 -5.1199 2.4380 24 6 8.4131 -6.8881 1.7401 25 7 8.4525 -7.8202 0.8117 26 14 9.6467 -6.9140 3.1427 27 1 9.3917 -5.7644 4.0474 28 1 9.5055 -8.1820 3.9025 29 1 11.0228 -6.8166 2.5934 30 6 2.2060 -1.1940 -0.0062 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6629 2.1274 0.0007 35 1 5.3136 0.1560 -0.0005 36 1 5.5425 -0.3826 -1.0332 37 1 7.0367 -0.7268 -0.1243 38 1 6.3098 -1.7667 -2.9020 39 1 7.5752 -0.5767 -2.5106 40 1 8.7492 -2.2936 -1.1439 41 1 8.5653 -2.8181 -2.8347 42 1 7.9859 -4.6578 -1.2890 43 1 6.5474 -4.1283 -2.1950 44 1 3.8138 -4.7880 -0.8213 45 1 5.2775 -4.8577 -1.8567 46 1 4.6856 -7.1901 -1.7666 47 1 4.0962 -7.0628 -0.0753 48 1 6.9861 -6.9747 -1.1017 49 1 6.3204 -7.9329 0.2561 50 1 9.1214 -8.5213 0.8564 51 1 1.6858 -2.1404 -0.0116 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025214965.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:58 Heat of formation + Delta-G solvation = 93.433941 kcal Electronic energy + Delta-G solvation = -32080.956819 eV Core-core repulsion = 28176.617691 eV Total energy + Delta-G solvation = -3904.339129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.24618 -39.79162 -37.28955 -36.84309 -34.10085 -33.14010 -32.44581 -31.97074 -30.84017 -29.17661 -27.74219 -27.17291 -25.23512 -24.39045 -24.33082 -22.80110 -22.48903 -20.88019 -20.22808 -19.74299 -18.37434 -17.60238 -17.00481 -16.50734 -16.26153 -15.45587 -15.26083 -15.09187 -14.63709 -14.39636 -14.28380 -14.00724 -13.73949 -13.55686 -13.31643 -13.22819 -13.04271 -12.94225 -12.82254 -12.73470 -12.17787 -12.00386 -11.69309 -11.36563 -11.24556 -11.15793 -10.92557 -10.83566 -10.61267 -10.49743 -10.29072 -10.07771 -9.99999 -9.89191 -9.73559 -9.59722 -9.45672 -9.41220 -9.00805 -8.67990 -8.49273 -8.05398 -6.61377 -5.66568 -3.00652 0.53902 0.99160 2.91142 3.13461 3.41677 3.48379 3.50005 3.68622 4.13453 4.41518 4.52187 4.56466 4.65632 4.73963 4.79679 4.89293 4.98785 5.10169 5.26578 5.30538 5.37561 5.43079 5.46915 5.51178 5.53080 5.66086 5.69446 5.81905 5.84888 5.91114 5.94815 5.97991 6.05318 6.10971 6.15372 6.22964 6.37402 6.38905 6.48193 6.55953 6.64980 6.77343 6.86810 6.99381 7.08741 7.12609 7.52738 7.64659 7.65950 7.69232 7.75906 7.90834 8.35091 8.51416 9.29825 9.92183 10.63430 11.45045 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.003480 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.041434 B = 8044.660068 C = 8477.158812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.146 4.146 3 C 0.109 3.891 4 N -0.485 5.485 5 C 0.082 3.918 6 C -0.169 4.169 7 C 0.541 3.459 8 O -0.500 6.500 9 N -0.594 5.594 10 C 0.062 3.938 11 C -0.131 4.131 12 C -0.121 4.121 13 C -0.126 4.126 14 C 0.137 3.863 15 H 0.076 0.924 16 C 0.167 3.833 17 H 0.069 0.931 18 C -0.124 4.124 19 C -0.152 4.152 20 C 0.176 3.824 21 N -0.595 5.595 22 C -0.223 4.223 23 H 0.072 0.928 24 C -0.005 4.005 25 N -0.916 5.916 26 Si 0.904 3.096 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.291 1.291 30 C -0.024 4.024 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.156 0.844 35 H 0.197 0.803 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.054 0.946 48 H 0.021 0.979 49 H 0.065 0.935 50 H 0.250 0.750 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.220 17.571 -6.701 21.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.148 4.148 3 C -0.048 4.048 4 N -0.192 5.192 5 C -0.074 4.074 6 C -0.174 4.174 7 C 0.330 3.670 8 O -0.377 6.377 9 N -0.327 5.327 10 C -0.060 4.060 11 C -0.170 4.170 12 C -0.159 4.159 13 C -0.164 4.164 14 C 0.033 3.967 15 H 0.094 0.906 16 C 0.060 3.940 17 H 0.086 0.914 18 C -0.161 4.161 19 C -0.191 4.191 20 C 0.051 3.949 21 N -0.320 5.320 22 C -0.352 4.352 23 H 0.089 0.911 24 C -0.201 4.201 25 N -0.563 5.563 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.218 1.218 30 C -0.051 4.051 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.173 0.827 35 H 0.212 0.788 36 H 0.132 0.868 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.104 0.896 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.039 0.961 49 H 0.083 0.917 50 H 0.061 0.939 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.865 17.644 -6.458 21.704 hybrid contribution 0.577 -0.795 0.625 1.165 sum -10.288 16.849 -5.833 20.585 Atomic orbital electron populations 1.20727 0.89796 1.03384 1.02750 1.20925 0.97889 0.93854 1.02116 1.22867 0.90199 0.97510 0.94227 1.67810 1.07949 1.31097 1.12373 1.24485 1.02182 0.87034 0.93705 1.21252 0.95185 0.95510 1.05432 1.18025 0.81850 0.87613 0.79548 1.90810 1.70862 1.28590 1.47435 1.48090 1.07995 1.13550 1.63096 1.22962 0.98838 0.88181 0.96063 1.21909 0.98909 0.99243 0.96890 1.21558 0.97632 0.95554 1.01108 1.22009 0.99790 0.97595 0.97036 1.22214 0.93010 0.84561 0.96914 0.90647 1.21598 0.89767 0.86148 0.96475 0.91367 1.23114 1.00650 0.95255 0.97087 1.23030 1.00622 0.96230 0.99210 1.21358 0.88805 0.92552 0.92210 1.44715 1.44975 1.08486 1.33831 1.19004 1.05658 1.10337 1.00187 0.91062 1.24865 0.98445 0.98578 0.98255 1.69964 1.36481 1.15552 1.34327 0.86159 0.81422 0.77352 0.81574 1.20553 1.21871 1.21844 1.21637 0.92553 0.98915 0.91961 0.90769 0.90994 0.91062 0.82660 0.78764 0.86815 0.90809 0.91735 0.91143 0.92015 0.92235 0.89415 0.91575 0.89582 0.92707 0.93227 0.92763 0.96114 0.91657 0.93925 0.83643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.03 36.01 0.36 -0.32 16 2 C -0.15 -1.36 5.89 -104.53 -0.62 -1.98 16 3 C 0.11 1.03 10.85 -17.47 -0.19 0.84 16 4 N -0.48 -5.51 10.35 -18.28 -0.19 -5.70 16 5 C 0.08 0.94 8.92 -17.13 -0.15 0.79 16 6 C -0.17 -2.18 5.74 -104.82 -0.60 -2.78 16 7 C 0.54 8.52 7.23 -12.33 -0.09 8.43 16 8 O -0.50 -9.30 9.30 5.31 0.05 -9.25 16 9 N -0.59 -8.96 2.95 -166.33 -0.49 -9.45 16 10 C 0.06 0.70 4.68 -3.71 -0.02 0.68 16 11 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16 12 C -0.12 -1.64 5.88 -26.69 -0.16 -1.80 16 13 C -0.13 -2.21 4.95 -26.61 -0.13 -2.34 16 14 C 0.14 2.54 2.72 -67.60 -0.18 2.36 16 15 H 0.08 1.56 7.77 -51.93 -0.40 1.15 16 16 C 0.17 3.63 2.28 -66.95 -0.15 3.48 16 17 H 0.07 1.65 5.87 -51.71 -0.30 1.34 16 18 C -0.12 -2.46 5.19 -24.89 -0.13 -2.59 16 19 C -0.15 -3.19 7.09 -24.58 -0.17 -3.36 16 20 C 0.18 4.40 5.41 -2.53 -0.01 4.39 16 21 N -0.60 -15.22 2.87 -162.57 -0.47 -15.69 16 22 C -0.22 -6.18 9.66 -15.06 -0.15 -6.32 16 23 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 24 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16 25 N -0.92 -26.84 10.58 55.49 0.59 -26.25 16 26 Si 0.90 22.18 29.55 -169.99 -5.02 17.15 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 30 C -0.02 -0.28 9.39 -38.87 -0.37 -0.65 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 34 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.20 1.93 4.12 -52.48 -0.22 1.72 16 36 H 0.11 1.12 3.51 -63.76 -0.22 0.89 16 37 H 0.07 0.75 8.03 -51.93 -0.42 0.34 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.85 8.03 -51.93 -0.42 1.44 16 43 H 0.07 1.16 5.45 -51.93 -0.28 0.88 16 44 H 0.09 1.70 5.50 -52.49 -0.29 1.41 16 45 H 0.05 1.05 5.07 -51.93 -0.26 0.78 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.02 0.55 8.06 -51.93 -0.42 0.14 16 49 H 0.07 1.83 6.94 -51.93 -0.36 1.47 16 50 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 51 H 0.15 1.65 7.81 -52.49 -0.41 1.24 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -31.64 377.94 -10.63 -42.26 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -7.77 Total: 4.23 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -3.02 Total: -3.00 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.56 Total: -57.09 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.05 Total: -9.25 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.64 -10.63 -42.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025214965.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.699 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds