Wall clock time and date at job start Wed Apr 1 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38363 * 120.34635 * 2 1 4 4 N 1.31927 * 121.07580 * 180.02562 * 3 2 1 5 5 C 1.31693 * 121.88565 * 0.02562 * 4 3 2 6 6 C 1.39528 * 120.56282 * 359.97438 * 5 4 3 7 7 C 1.47834 * 120.55516 * 180.02562 * 6 5 4 8 8 O 1.21550 * 120.00270 * 145.27684 * 7 6 5 9 9 N 1.34779 * 120.00406 * 325.27461 * 7 6 5 10 10 C 1.46925 * 120.62965 * 352.82208 * 9 7 6 11 11 C 1.53192 * 108.89272 * 126.29446 * 10 9 7 12 12 C 1.53355 * 109.14819 * 54.58410 * 11 10 9 13 13 C 1.53049 * 109.60290 * 298.70976 * 12 11 10 14 14 C 1.46929 * 120.63235 * 172.79790 * 9 7 6 15 15 H 1.09006 * 109.58370 * 113.70289 * 14 9 7 16 16 C 1.53003 * 109.58499 * 353.42230 * 14 9 7 17 17 H 1.08993 * 109.87320 * 56.42809 * 16 14 9 18 18 C 1.54320 * 109.87843 * 295.24879 * 16 14 9 19 19 C 1.55163 * 102.93748 * 218.39301 * 18 16 14 20 20 C 1.54904 * 101.58510 * 35.50574 * 19 18 16 21 21 N 1.47027 * 109.87696 * 177.44151 * 16 14 9 22 22 C 1.36935 * 125.64892 * 298.31855 * 21 16 14 23 23 H 1.07998 * 120.00100 * 345.32339 * 22 21 16 24 24 C 1.38816 * 120.00017 * 165.32930 * 22 21 16 25 25 N 1.31626 * 119.99562 * 359.97438 * 24 22 21 26 26 Si 1.86793 * 120.00157 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47116 * 59.99603 * 26 24 22 28 28 H 1.48499 * 109.47113 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.47031 * 299.99955 * 26 24 22 30 30 C 1.38359 * 120.35365 * 180.30638 * 2 1 3 31 31 H 1.09004 * 109.47055 * 90.00036 * 1 2 3 32 32 H 1.08999 * 109.47112 * 209.99637 * 1 2 3 33 33 H 1.08999 * 109.47518 * 330.00296 * 1 2 3 34 34 H 1.07993 * 119.45701 * 0.04206 * 3 2 1 35 35 H 1.07997 * 119.72054 * 180.02562 * 5 4 3 36 36 H 1.08992 * 109.58831 * 246.15645 * 10 9 7 37 37 H 1.09008 * 109.58676 * 6.44010 * 10 9 7 38 38 H 1.09004 * 109.49723 * 174.65657 * 11 10 9 39 39 H 1.08996 * 109.49971 * 294.75764 * 11 10 9 40 40 H 1.08995 * 109.41910 * 178.67317 * 12 11 10 41 41 H 1.08998 * 109.42166 * 58.74428 * 12 11 10 42 42 H 1.09002 * 109.49396 * 301.42229 * 13 12 11 43 43 H 1.08999 * 109.52266 * 181.34452 * 13 12 11 44 44 H 1.08994 * 110.72409 * 336.75120 * 18 16 14 45 45 H 1.08994 * 110.71834 * 100.03469 * 18 16 14 46 46 H 1.09005 * 111.00065 * 277.42754 * 19 18 16 47 47 H 1.09003 * 111.00402 * 153.58202 * 19 18 16 48 48 H 1.09002 * 110.36697 * 204.15405 * 20 19 18 49 49 H 1.08995 * 110.46136 * 81.87031 * 20 19 18 50 50 H 0.97003 * 119.99303 * 180.02562 * 25 24 22 51 51 H 1.08005 * 120.85071 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2060 1.1941 0.0000 4 7 3.5251 1.2108 -0.0005 5 6 4.2350 0.1016 -0.0015 6 6 3.6054 -1.1436 -0.0016 7 6 4.4024 -2.3887 -0.0022 8 8 4.0016 -3.3672 0.5973 9 7 5.5734 -2.4390 -0.6675 10 6 5.9964 -1.3226 -1.5238 11 6 7.3981 -0.8744 -1.0981 12 6 8.3421 -2.0827 -1.1238 13 6 7.8488 -3.1408 -0.1340 14 6 6.4515 -3.6112 -0.5498 15 1 6.5070 -4.1240 -1.5101 16 6 5.8949 -4.5647 0.5094 17 1 4.8718 -4.8428 0.2567 18 6 5.9312 -3.8878 1.8958 19 6 6.3332 -5.0515 2.8401 20 6 7.3082 -5.8560 1.9448 21 7 6.7351 -5.7686 0.5893 22 6 6.9492 -6.6612 -0.4269 23 1 6.3113 -6.6507 -1.2983 24 6 7.9861 -7.5797 -0.3368 25 7 8.7638 -7.5923 0.7250 26 14 8.2787 -8.7969 -1.7232 27 1 8.5623 -8.0576 -2.9794 28 1 9.4376 -9.6621 -1.3861 29 1 7.0689 -9.6384 -1.9066 30 6 2.2061 -1.1939 -0.0064 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6628 2.1274 0.0007 35 1 5.3135 0.1561 -0.0015 36 1 6.0168 -1.6473 -2.5640 37 1 5.2983 -0.4927 -1.4137 38 1 7.7606 -0.1107 -1.7863 39 1 7.3584 -0.4656 -0.0884 40 1 9.3462 -1.7641 -0.8442 41 1 8.3617 -2.5060 -2.1280 42 1 7.8051 -2.7106 0.8666 43 1 8.5337 -3.9887 -0.1359 44 1 6.6800 -3.0961 1.9190 45 1 4.9482 -3.4983 2.1605 46 1 5.4651 -5.6525 3.1109 47 1 6.8391 -4.6758 3.7295 48 1 7.3533 -6.8950 2.2713 49 1 8.3020 -5.4089 1.9660 50 1 9.4886 -8.2339 0.7877 51 1 1.6859 -2.1404 -0.0110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025214966.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:02 Heat of formation + Delta-G solvation = 65.431249 kcal Electronic energy + Delta-G solvation = -32132.561208 eV Core-core repulsion = 28227.007792 eV Total energy + Delta-G solvation = -3905.553417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.19213 -39.80902 -37.29101 -36.77566 -34.00443 -33.06697 -32.46269 -31.99156 -30.83275 -29.16230 -27.65320 -27.16366 -25.28901 -24.36697 -24.09850 -22.74681 -22.56203 -20.92246 -20.09358 -19.66317 -18.44021 -17.42337 -17.27770 -16.61881 -16.23411 -15.58024 -15.16578 -14.70579 -14.54781 -14.50486 -14.32774 -14.05315 -13.69806 -13.57672 -13.46294 -13.23362 -13.12569 -12.95759 -12.80713 -12.70490 -12.04449 -12.01362 -11.79183 -11.45717 -11.30855 -11.25199 -10.93443 -10.81178 -10.66174 -10.54984 -10.26023 -10.10732 -10.04467 -9.94305 -9.80085 -9.59345 -9.52968 -9.44204 -9.06915 -8.73159 -8.43766 -8.10410 -6.60703 -5.66130 -2.99976 0.55972 0.97607 2.85965 3.13356 3.42886 3.48007 3.48605 3.60484 4.12388 4.41620 4.51307 4.56602 4.65182 4.71540 4.82226 4.88798 4.96963 5.14318 5.24927 5.26601 5.41407 5.43467 5.47579 5.54754 5.55664 5.64692 5.68760 5.80648 5.82875 5.91414 5.93110 5.97442 6.03921 6.09440 6.12716 6.23256 6.35404 6.38569 6.48815 6.55194 6.62432 6.76013 6.88634 6.96612 7.06172 7.08046 7.53332 7.62990 7.65801 7.69353 7.75427 7.90622 8.34424 8.48428 9.30180 9.92434 10.63842 11.45512 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.003452 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.112638 B = 8109.093013 C = 8594.867202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.144 4.144 3 C 0.109 3.891 4 N -0.484 5.484 5 C 0.113 3.887 6 C -0.168 4.168 7 C 0.548 3.452 8 O -0.502 6.502 9 N -0.595 5.595 10 C 0.085 3.915 11 C -0.134 4.134 12 C -0.119 4.119 13 C -0.123 4.123 14 C 0.138 3.862 15 H 0.073 0.927 16 C 0.160 3.840 17 H 0.079 0.921 18 C -0.127 4.127 19 C -0.150 4.150 20 C 0.176 3.824 21 N -0.594 5.594 22 C -0.223 4.223 23 H 0.071 0.929 24 C -0.004 4.004 25 N -0.917 5.917 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.027 4.027 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.157 0.843 35 H 0.169 0.831 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.054 0.946 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.066 0.934 49 H 0.021 0.979 50 H 0.251 0.749 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.620 18.947 -2.404 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.146 4.146 3 C -0.048 4.048 4 N -0.192 5.192 5 C -0.044 4.044 6 C -0.173 4.173 7 C 0.335 3.665 8 O -0.378 6.378 9 N -0.328 5.328 10 C -0.039 4.039 11 C -0.173 4.173 12 C -0.157 4.157 13 C -0.161 4.161 14 C 0.034 3.966 15 H 0.090 0.910 16 C 0.053 3.947 17 H 0.097 0.903 18 C -0.164 4.164 19 C -0.189 4.189 20 C 0.051 3.949 21 N -0.319 5.319 22 C -0.352 4.352 23 H 0.088 0.912 24 C -0.201 4.201 25 N -0.564 5.564 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.053 4.053 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.174 0.826 35 H 0.186 0.814 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.110 0.890 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.084 0.916 49 H 0.039 0.961 50 H 0.062 0.938 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.222 19.005 -2.124 21.684 hybrid contribution 0.076 -1.365 -0.888 1.630 sum -10.146 17.640 -3.013 20.572 Atomic orbital electron populations 1.20728 0.89760 1.03410 1.02771 1.20912 0.97894 0.93816 1.02016 1.22835 0.90004 0.97539 0.94378 1.67728 1.08024 1.30936 1.12522 1.23301 1.00746 0.86788 0.93566 1.21233 0.95194 0.95590 1.05294 1.18009 0.81401 0.86965 0.80119 1.90800 1.69571 1.34492 1.42980 1.48194 1.19300 1.19606 1.45704 1.22253 0.96757 0.90079 0.94769 1.21991 0.94978 0.98497 1.01790 1.21598 0.98195 0.95478 1.00444 1.21938 0.96979 0.99065 0.98154 1.22245 0.88781 0.83814 1.01746 0.90951 1.21725 0.95451 0.85988 0.91529 0.90342 1.23000 1.00445 0.97210 0.95777 1.23003 1.00238 0.98037 0.97594 1.21360 0.92083 0.98487 0.83010 1.44680 1.55717 1.22075 1.09420 1.18911 1.09420 1.09428 0.97457 0.91153 1.24860 0.97133 1.00331 0.97793 1.69945 1.20384 1.38280 1.27805 0.86306 0.77315 0.81025 0.81771 1.21263 1.21726 1.21251 1.21601 0.92411 0.98899 0.92430 0.90749 0.90992 0.91022 0.82570 0.81412 0.91362 0.89047 0.90985 0.91655 0.92111 0.92022 0.91841 0.89028 0.92796 0.90539 0.92673 0.93154 0.91611 0.96065 0.93820 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.03 36.00 0.36 -0.30 16 2 C -0.14 -1.32 5.89 -104.53 -0.62 -1.93 16 3 C 0.11 1.02 10.85 -17.46 -0.19 0.83 16 4 N -0.48 -5.49 10.35 -12.91 -0.13 -5.63 16 5 C 0.11 1.32 8.56 -17.13 -0.15 1.17 16 6 C -0.17 -2.16 5.40 -104.82 -0.57 -2.73 16 7 C 0.55 8.65 6.57 -12.33 -0.08 8.57 16 8 O -0.50 -9.51 10.27 5.32 0.05 -9.46 16 9 N -0.59 -9.04 2.94 -166.33 -0.49 -9.53 16 10 C 0.08 0.99 5.51 -3.71 -0.02 0.97 16 11 C -0.13 -1.46 5.79 -26.45 -0.15 -1.62 16 12 C -0.12 -1.63 5.89 -26.52 -0.16 -1.78 16 13 C -0.12 -2.17 4.97 -26.61 -0.13 -2.30 16 14 C 0.14 2.57 2.68 -67.60 -0.18 2.39 16 15 H 0.07 1.50 7.91 -51.93 -0.41 1.09 16 16 C 0.16 3.48 2.29 -66.95 -0.15 3.33 16 17 H 0.08 1.90 5.75 -52.78 -0.30 1.60 16 18 C -0.13 -2.53 4.97 -24.90 -0.12 -2.65 16 19 C -0.15 -3.14 7.08 -24.58 -0.17 -3.32 16 20 C 0.18 4.38 5.41 -2.53 -0.01 4.37 16 21 N -0.59 -15.15 2.65 -162.57 -0.43 -15.58 16 22 C -0.22 -6.17 9.76 -15.06 -0.15 -6.32 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C 0.00 -0.13 5.47 -17.43 -0.10 -0.22 16 25 N -0.92 -26.79 10.58 55.49 0.59 -26.20 16 26 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 C -0.03 -0.31 9.44 -38.87 -0.37 -0.68 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.17 1.78 5.15 -52.49 -0.27 1.51 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.94 3.72 -51.92 -0.19 0.75 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.70 7.55 -51.93 -0.39 0.31 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 1.12 5.65 -51.93 -0.29 0.82 16 43 H 0.09 1.97 7.90 -51.93 -0.41 1.56 16 44 H 0.05 1.03 5.37 -51.93 -0.28 0.75 16 45 H 0.08 1.53 5.72 -51.93 -0.30 1.23 16 46 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.07 1.83 6.94 -51.93 -0.36 1.47 16 49 H 0.02 0.56 8.05 -51.93 -0.42 0.15 16 50 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 51 H 0.14 1.59 8.05 -52.48 -0.42 1.17 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -31.31 379.35 -10.49 -41.80 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -7.82 Total: 3.99 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -2.95 Total: -2.23 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.47 Total: -56.94 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.05 Total: -9.46 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.31 -10.49 -41.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025214966.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.236 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds