Wall clock time and date at job start Wed Apr 1 2020 02:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38352 * 120.34515 * 2 1 4 4 N 1.31932 * 121.07524 * 180.02562 * 3 2 1 5 5 C 1.31688 * 121.88277 * 0.02562 * 4 3 2 6 6 C 1.39528 * 120.56593 * 359.97438 * 5 4 3 7 7 C 1.47839 * 120.56089 * 180.02562 * 6 5 4 8 8 O 1.21552 * 120.00335 * 217.30608 * 7 6 5 9 9 N 1.34781 * 119.99500 * 37.31233 * 7 6 5 10 10 C 1.46918 * 120.63329 * 6.80641 * 9 7 6 11 11 C 1.53624 * 108.54313 * 126.37349 * 10 9 7 12 12 C 1.53036 * 109.24289 * 54.85396 * 11 10 9 13 13 C 1.53031 * 109.53981 * 298.51263 * 12 11 10 14 14 C 1.46928 * 120.62528 * 187.09215 * 9 7 6 15 15 H 1.09002 * 109.58770 * 113.80033 * 14 9 7 16 16 C 1.52999 * 109.58987 * 353.36713 * 14 9 7 17 17 H 1.09002 * 109.87582 * 314.94416 * 16 14 9 18 18 C 1.54326 * 109.88204 * 76.11722 * 16 14 9 19 19 C 1.55157 * 102.94297 * 141.61011 * 18 16 14 20 20 C 1.54915 * 101.58226 * 324.50167 * 19 18 16 21 21 N 1.47015 * 109.88464 * 193.92561 * 16 14 9 22 22 C 1.36940 * 125.64776 * 61.60637 * 21 16 14 23 23 H 1.08008 * 120.00109 * 18.65717 * 22 21 16 24 24 C 1.38818 * 120.00313 * 198.65298 * 22 21 16 25 25 N 1.31618 * 119.99473 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00084 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47254 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.46865 * 120.00202 * 26 24 22 29 29 H 1.48498 * 109.47457 * 240.00389 * 26 24 22 30 30 C 1.38355 * 120.34932 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47692 * 269.98369 * 1 2 3 32 32 H 1.09011 * 109.46881 * 29.98579 * 1 2 3 33 33 H 1.09003 * 109.47480 * 149.97719 * 1 2 3 34 34 H 1.07997 * 119.46769 * 0.02562 * 3 2 1 35 35 H 1.07997 * 119.71932 * 179.97438 * 5 4 3 36 36 H 1.09004 * 109.58656 * 246.20525 * 10 9 7 37 37 H 1.09003 * 109.59005 * 6.62880 * 10 9 7 38 38 H 1.09002 * 109.62939 * 294.86239 * 11 10 9 39 39 H 1.09000 * 109.43197 * 174.73009 * 11 10 9 40 40 H 1.09002 * 109.45737 * 178.49141 * 12 11 10 41 41 H 1.08996 * 109.45890 * 58.53549 * 12 11 10 42 42 H 1.09002 * 109.50463 * 301.41408 * 13 12 11 43 43 H 1.09002 * 109.52933 * 181.33503 * 13 12 11 44 44 H 1.08994 * 110.72034 * 259.97902 * 18 16 14 45 45 H 1.09008 * 110.71551 * 23.24738 * 18 16 14 46 46 H 1.08993 * 111.00690 * 206.42731 * 19 18 16 47 47 H 1.08996 * 111.03465 * 82.58825 * 19 18 16 48 48 H 1.09001 * 110.36586 * 278.17407 * 20 19 18 49 49 H 1.08995 * 110.45859 * 155.89580 * 20 19 18 50 50 H 0.97002 * 119.99423 * 179.97438 * 25 24 22 51 51 H 1.08000 * 120.84984 * 0.25543 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5252 1.2108 -0.0005 5 6 4.2349 0.1015 -0.0015 6 6 3.6054 -1.1436 -0.0016 7 6 4.4023 -2.3889 -0.0022 8 8 4.0244 -3.3520 -0.6402 9 7 5.5477 -2.4561 0.7050 10 6 5.9420 -1.3578 1.5976 11 6 6.2131 -1.9370 2.9944 12 6 7.2483 -3.0585 2.8832 13 6 6.6972 -4.1777 1.9969 14 6 6.4288 -3.6265 0.5929 15 1 7.3706 -3.3319 0.1299 16 6 5.7492 -4.7007 -0.2585 17 1 4.7089 -4.8127 0.0472 18 6 5.8222 -4.3120 -1.7503 19 6 6.0762 -5.6724 -2.4518 20 6 6.9828 -6.3897 -1.4207 21 7 6.4557 -5.9809 -0.1060 22 6 6.6009 -6.6779 1.0638 23 1 5.9470 -6.4737 1.8988 24 6 7.5885 -7.6469 1.1765 25 7 8.3856 -7.8954 0.1590 26 14 7.7869 -8.5971 2.7724 27 1 6.7749 -8.1320 3.7545 28 1 7.5944 -10.0465 2.5126 29 1 9.1488 -8.3686 3.3185 30 6 2.2061 -1.1939 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8902 -0.5137 33 1 -0.3634 -0.8898 -0.5142 34 1 1.6629 2.1275 0.0004 35 1 5.3135 0.1561 -0.0023 36 1 6.8449 -0.8820 1.2148 37 1 5.1365 -0.6257 1.6541 38 1 5.2882 -2.3355 3.4114 39 1 6.5967 -1.1508 3.6447 40 1 7.4633 -3.4540 3.8760 41 1 8.1645 -2.6647 2.4433 42 1 5.7678 -4.5553 2.4232 43 1 7.4250 -4.9869 1.9370 44 1 4.8795 -3.8770 -2.0820 45 1 6.6495 -3.6252 -1.9297 46 1 6.5968 -5.5323 -3.3991 47 1 5.1436 -6.2174 -2.5978 48 1 8.0168 -6.0633 -1.5329 49 1 6.9121 -7.4710 -1.5383 50 1 9.0759 -8.5723 0.2379 51 1 1.6858 -2.1403 -0.0051 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025214967.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:06 Heat of formation + Delta-G solvation = 62.307097 kcal Electronic energy + Delta-G solvation = -32100.772407 eV Core-core repulsion = 28195.083517 eV Total energy + Delta-G solvation = -3905.688890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.07995 -39.76058 -37.21001 -36.76866 -33.98656 -32.99034 -32.63565 -31.86716 -30.97463 -29.00086 -27.60128 -27.19952 -25.19973 -24.55634 -24.02996 -22.75871 -22.28242 -20.80794 -19.85433 -19.38029 -19.06343 -17.38171 -17.14643 -16.67283 -16.13198 -15.55987 -15.19735 -15.03318 -14.46388 -14.39164 -13.95912 -13.93202 -13.76810 -13.71787 -13.28056 -13.04040 -12.98884 -12.89988 -12.79090 -12.53647 -12.18200 -12.02628 -11.87235 -11.60950 -11.39086 -11.01726 -10.88796 -10.86144 -10.72607 -10.52702 -10.13594 -10.07077 -9.99118 -9.94917 -9.80596 -9.64815 -9.43652 -9.29556 -9.06114 -8.73017 -8.32789 -8.09453 -6.56857 -5.71170 -3.04151 0.59408 0.99719 2.87100 3.16481 3.38881 3.45983 3.47363 3.62509 4.13186 4.45413 4.51756 4.53808 4.67733 4.73341 4.87361 4.92581 5.07358 5.20152 5.26832 5.31844 5.41692 5.43509 5.50276 5.60917 5.64413 5.67890 5.74524 5.82647 5.87533 5.92899 5.96179 6.04776 6.13263 6.14614 6.25154 6.31197 6.37237 6.38594 6.57012 6.65972 6.67303 6.81730 6.94269 6.99041 7.12217 7.37687 7.58226 7.63087 7.64994 7.70046 7.77095 7.87264 8.32822 8.50758 9.26168 9.88065 10.62043 11.40975 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015649 B = 0.003570 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.812120 B = 7840.965238 C = 8577.383363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.145 4.145 3 C 0.109 3.891 4 N -0.485 5.485 5 C 0.118 3.882 6 C -0.167 4.167 7 C 0.543 3.457 8 O -0.501 6.501 9 N -0.596 5.596 10 C 0.097 3.903 11 C -0.132 4.132 12 C -0.124 4.124 13 C -0.128 4.128 14 C 0.140 3.860 15 H 0.061 0.939 16 C 0.164 3.836 17 H 0.074 0.926 18 C -0.119 4.119 19 C -0.150 4.150 20 C 0.175 3.825 21 N -0.597 5.597 22 C -0.219 4.219 23 H 0.075 0.925 24 C -0.005 4.005 25 N -0.912 5.912 26 Si 0.900 3.100 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.290 1.290 30 C -0.028 4.028 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.120 0.880 44 H 0.087 0.913 45 H 0.042 0.958 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.024 0.976 49 H 0.059 0.941 50 H 0.251 0.749 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.390 18.077 1.357 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.146 4.146 3 C -0.048 4.048 4 N -0.193 5.193 5 C -0.039 4.039 6 C -0.172 4.172 7 C 0.331 3.669 8 O -0.378 6.378 9 N -0.329 5.329 10 C -0.026 4.026 11 C -0.170 4.170 12 C -0.162 4.162 13 C -0.165 4.165 14 C 0.036 3.964 15 H 0.079 0.921 16 C 0.057 3.943 17 H 0.091 0.909 18 C -0.156 4.156 19 C -0.189 4.189 20 C 0.050 3.950 21 N -0.322 5.322 22 C -0.347 4.347 23 H 0.093 0.907 24 C -0.202 4.202 25 N -0.558 5.558 26 Si 0.730 3.270 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.217 1.217 30 C -0.054 4.054 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.174 0.826 35 H 0.180 0.820 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.137 0.863 44 H 0.105 0.895 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.042 0.958 49 H 0.077 0.923 50 H 0.062 0.938 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.998 18.163 1.093 20.761 hybrid contribution 0.028 -1.174 0.960 1.517 sum -9.970 16.988 2.052 19.804 Atomic orbital electron populations 1.20728 0.89789 1.03376 1.02766 1.20903 0.97874 0.93829 1.02042 1.22818 0.89989 0.97518 0.94486 1.67707 1.08021 1.30977 1.12546 1.23165 1.00565 0.86718 0.93496 1.21248 0.95187 0.95675 1.05077 1.18079 0.81407 0.86921 0.80497 1.90812 1.69357 1.35271 1.42312 1.48260 1.21498 1.20466 1.42669 1.22147 1.00453 0.89488 0.90532 1.21984 1.00370 0.98881 0.95784 1.21645 0.97717 0.96305 1.00510 1.22365 1.03155 0.98116 0.92894 1.22344 0.92143 0.83998 0.97906 0.92080 1.21668 0.96010 0.84477 0.92161 0.90853 1.22931 1.00378 0.96502 0.95835 1.23000 1.00260 0.97383 0.98221 1.21322 0.93252 0.97898 0.82530 1.44752 1.64146 1.18213 1.05067 1.19010 1.10700 1.14162 0.90876 0.90694 1.24957 0.97291 1.00523 0.97455 1.69963 1.21531 1.35013 1.29302 0.86225 0.77525 0.79840 0.83401 1.20375 1.21819 1.21736 1.21592 0.92430 0.98860 0.92523 0.90757 0.91046 0.91012 0.82613 0.82013 0.91328 0.89967 0.91816 0.91522 0.92226 0.92410 0.92497 0.86254 0.89536 0.93907 0.93119 0.92655 0.95766 0.92280 0.93828 0.83920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.03 36.01 0.36 -0.32 16 2 C -0.14 -1.34 5.89 -104.54 -0.62 -1.96 16 3 C 0.11 1.03 10.85 -17.47 -0.19 0.84 16 4 N -0.48 -5.56 10.35 -12.91 -0.13 -5.69 16 5 C 0.12 1.38 8.56 -17.13 -0.15 1.23 16 6 C -0.17 -2.16 5.21 -104.82 -0.55 -2.70 16 7 C 0.54 8.61 7.00 -12.33 -0.09 8.53 16 8 O -0.50 -9.42 9.73 5.32 0.05 -9.36 16 9 N -0.60 -9.17 2.97 -166.06 -0.49 -9.66 16 10 C 0.10 1.16 4.85 -3.49 -0.02 1.15 16 11 C -0.13 -1.61 6.10 -26.39 -0.16 -1.78 16 12 C -0.12 -1.84 5.88 -26.70 -0.16 -1.99 16 13 C -0.13 -2.41 3.80 -26.61 -0.10 -2.52 16 14 C 0.14 2.62 2.68 -67.60 -0.18 2.44 16 15 H 0.06 1.20 7.79 -51.93 -0.40 0.80 16 16 C 0.16 3.55 2.32 -66.96 -0.16 3.39 16 17 H 0.07 1.75 5.82 -52.03 -0.30 1.45 16 18 C -0.12 -2.40 5.40 -24.90 -0.13 -2.54 16 19 C -0.15 -3.14 7.09 -24.58 -0.17 -3.32 16 20 C 0.18 4.37 5.37 -2.53 -0.01 4.36 16 21 N -0.60 -15.06 3.09 -162.57 -0.50 -15.56 16 22 C -0.22 -5.82 6.73 -15.06 -0.10 -5.92 16 23 H 0.08 1.97 6.43 -52.48 -0.34 1.63 16 24 C 0.00 -0.14 5.46 -17.43 -0.10 -0.23 16 25 N -0.91 -26.33 10.74 55.49 0.60 -25.73 16 26 Si 0.90 21.60 29.55 -169.99 -5.02 16.57 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 C -0.03 -0.32 9.46 -38.87 -0.37 -0.69 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.34 8.09 -51.92 -0.42 -0.08 16 33 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.16 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.16 1.69 6.33 -52.49 -0.33 1.36 16 36 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.08 0.88 4.67 -51.93 -0.24 0.64 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.15 7.31 -51.93 -0.38 0.77 16 43 H 0.12 2.71 5.60 -51.93 -0.29 2.42 16 44 H 0.09 1.74 5.57 -51.97 -0.29 1.45 16 45 H 0.04 0.84 7.63 -51.92 -0.40 0.44 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 48 H 0.02 0.65 7.96 -51.93 -0.41 0.24 16 49 H 0.06 1.63 7.22 -51.93 -0.37 1.25 16 50 H 0.25 7.08 8.31 -40.82 -0.34 6.75 16 51 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 378.41 15.07 5.70 5.70 Total: -1.00 -30.58 378.41 -10.65 -41.23 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.96 Total: 4.51 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.88 Total: -2.01 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: -0.53 Total: -56.64 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.05 Total: -9.36 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.58 -10.65 -41.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025214967.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.538 kcal (2) G-P(sol) polarization free energy of solvation -30.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds