Wall clock time and date at job start Wed Apr 1 2020 03:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38392 * 120.85347 * 2 1 4 4 C 1.38314 * 119.30182 * 180.02562 * 3 2 1 5 5 N 1.31956 * 121.08357 * 0.25811 * 4 3 2 6 6 C 1.31667 * 121.87489 * 359.46493 * 5 4 3 7 7 C 1.39567 * 120.56759 * 0.53341 * 6 5 4 8 8 C 1.47837 * 120.55811 * 179.76392 * 7 6 5 9 9 O 1.21554 * 119.99745 * 244.31149 * 8 7 6 10 10 N 1.34779 * 120.00383 * 64.31475 * 8 7 6 11 11 C 1.46927 * 120.62582 * 4.85624 * 10 8 7 12 12 C 1.52763 * 109.00456 * 233.58416 * 11 10 8 13 13 C 1.53044 * 109.38408 * 305.58871 * 12 11 10 14 14 C 1.53036 * 109.53511 * 61.24209 * 13 12 11 15 15 C 1.46922 * 120.62875 * 185.13887 * 10 8 7 16 16 H 1.09005 * 109.58313 * 246.15201 * 15 10 8 17 17 C 1.52996 * 109.59214 * 6.43604 * 15 10 8 18 18 H 1.09005 * 109.87374 * 314.08345 * 17 15 10 19 19 C 1.54319 * 109.88553 * 192.90286 * 17 15 10 20 20 C 1.55151 * 102.94616 * 218.39088 * 19 17 15 21 21 C 1.54911 * 101.57986 * 35.50264 * 20 19 17 22 22 N 1.47023 * 109.88070 * 75.09657 * 17 15 10 23 23 C 1.36940 * 125.64695 * 298.32256 * 22 17 15 24 24 H 1.07998 * 120.00029 * 5.79805 * 23 22 17 25 25 C 1.38817 * 119.99652 * 185.79655 * 23 22 17 26 26 N 1.31614 * 120.00106 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99828 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47183 * 59.99670 * 27 25 23 29 29 H 1.48498 * 109.47370 * 179.97438 * 27 25 23 30 30 H 1.48505 * 109.47217 * 300.00239 * 27 25 23 31 31 H 1.08992 * 109.47369 * 85.02732 * 1 2 3 32 32 H 1.09003 * 109.47335 * 205.02839 * 1 2 3 33 33 H 1.09000 * 109.46962 * 325.02806 * 1 2 3 34 34 H 1.07993 * 120.35167 * 0.02562 * 3 2 1 35 35 H 1.08002 * 119.45824 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.71580 * 180.24317 * 6 5 4 37 37 H 1.08996 * 109.58885 * 353.42153 * 11 10 8 38 38 H 1.09005 * 109.58327 * 113.84729 * 11 10 8 39 39 H 1.09000 * 109.55835 * 185.55714 * 12 11 10 40 40 H 1.08993 * 109.35875 * 65.50249 * 12 11 10 41 41 H 1.08999 * 109.45961 * 301.22005 * 13 12 11 42 42 H 1.08998 * 109.44531 * 181.25320 * 13 12 11 43 43 H 1.09000 * 109.49651 * 178.68136 * 14 13 12 44 44 H 1.09007 * 109.49742 * 58.58693 * 14 13 12 45 45 H 1.08996 * 110.71952 * 336.75592 * 19 17 15 46 46 H 1.09007 * 110.71752 * 100.02665 * 19 17 15 47 47 H 1.09005 * 111.00700 * 277.43037 * 20 19 17 48 48 H 1.09004 * 111.04019 * 153.59175 * 20 19 17 49 49 H 1.09009 * 110.36606 * 204.15483 * 21 20 19 50 50 H 1.08998 * 110.46146 * 81.87748 * 21 20 19 51 51 H 0.97001 * 119.99841 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1506 -0.0005 5 7 4.2498 0.0025 -0.0061 6 6 3.6197 -1.1536 -0.0010 7 6 2.2249 -1.2017 -0.0005 8 6 1.5176 -2.4999 0.0000 9 8 0.8258 -2.8155 -0.9483 10 7 1.6398 -3.3336 1.0520 11 6 2.3849 -2.9229 2.2499 12 6 3.4459 -3.9768 2.5615 13 6 2.7798 -5.3500 2.6751 14 6 2.1166 -5.7088 1.3434 15 6 1.0357 -4.6725 1.0201 16 1 0.2392 -4.7317 1.7620 17 6 0.4613 -4.9432 -0.3718 18 1 -0.1069 -4.0778 -0.7129 19 6 -0.4479 -6.1894 -0.3312 20 6 -0.1350 -6.8920 -1.6786 21 6 1.3769 -6.5957 -1.8401 22 7 1.5517 -5.2290 -1.3157 23 6 2.5619 -4.3680 -1.6526 24 1 2.6558 -3.4202 -1.1436 25 6 3.4652 -4.7137 -2.6484 26 7 3.3504 -5.8686 -3.2690 27 14 4.8436 -3.5395 -3.1075 28 1 5.6980 -3.2902 -1.9187 29 1 5.6648 -4.1392 -4.1897 30 1 4.2642 -2.2559 -3.5785 31 1 -0.3633 0.0891 -1.0237 32 1 -0.3634 -0.9312 0.4348 33 1 -0.3633 0.8421 0.5890 34 1 1.6966 2.1345 0.0004 35 1 4.1558 2.0763 -0.0010 36 1 4.1871 -2.0726 -0.0019 37 1 2.8677 -1.9627 2.0686 38 1 1.7006 -2.8365 3.0940 39 1 3.9379 -3.7321 3.5028 40 1 4.1833 -3.9954 1.7590 41 1 2.0252 -5.3237 3.4612 42 1 3.5327 -6.0994 2.9194 43 1 1.6625 -6.6970 1.4177 44 1 2.8666 -5.7111 0.5524 45 1 -0.1844 -6.8318 0.5090 46 1 -1.4976 -5.8995 -0.2821 47 1 -0.7090 -6.4494 -2.4927 48 1 -0.3180 -7.9646 -1.6125 49 1 1.6616 -6.6379 -2.8915 50 1 1.9681 -7.3034 -1.2590 51 1 3.9819 -6.1102 -3.9646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025215451.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:06 Heat of formation + Delta-G solvation = 79.016141 kcal Electronic energy + Delta-G solvation = -33650.721564 eV Core-core repulsion = 29745.757233 eV Total energy + Delta-G solvation = -3904.964331 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.94600 -39.52595 -37.05731 -36.58439 -33.81339 -32.64383 -32.41680 -31.49678 -30.52939 -28.98037 -27.93507 -27.16497 -25.08456 -24.22252 -23.78742 -22.58423 -22.11922 -20.56540 -20.03769 -19.46641 -18.65925 -17.18651 -16.77335 -16.33599 -16.01577 -15.86193 -15.05220 -14.51259 -14.34573 -14.20435 -14.05554 -13.80368 -13.69501 -13.44524 -13.16924 -13.01109 -12.79443 -12.74195 -12.65373 -12.33779 -11.98500 -11.81139 -11.67555 -11.61687 -11.16037 -10.99897 -10.88140 -10.71111 -10.65630 -10.51093 -10.19051 -10.05166 -9.97544 -9.73895 -9.52591 -9.47468 -9.42230 -9.01556 -8.98249 -8.49228 -8.08963 -7.88744 -6.48005 -5.40937 -2.81193 1.01948 1.28410 3.15567 3.43073 3.47092 3.52449 3.55865 3.85016 4.49625 4.64149 4.70568 4.76086 4.83116 5.02438 5.11600 5.18952 5.27833 5.46277 5.48682 5.51645 5.58252 5.61043 5.64847 5.69499 5.74058 5.79503 5.81873 5.86772 5.93930 5.99157 6.07913 6.08888 6.12330 6.20108 6.26802 6.34787 6.42062 6.44371 6.52743 6.58206 6.70959 6.72172 6.83316 6.91806 7.06589 7.27597 7.57461 7.68146 7.83494 7.95179 8.03360 8.09068 8.62377 8.85956 9.45062 10.07913 10.74061 11.59199 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010002 B = 0.006302 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.733093 B = 4441.624264 C = 5313.663919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.008 4.008 3 C -0.181 4.181 4 C 0.105 3.895 5 N -0.489 5.489 6 C 0.136 3.864 7 C -0.166 4.166 8 C 0.570 3.430 9 O -0.475 6.475 10 N -0.596 5.596 11 C 0.109 3.891 12 C -0.134 4.134 13 C -0.116 4.116 14 C -0.126 4.126 15 C 0.143 3.857 16 H 0.053 0.947 17 C 0.123 3.877 18 H 0.110 0.890 19 C -0.131 4.131 20 C -0.142 4.142 21 C 0.141 3.859 22 N -0.576 5.576 23 C -0.184 4.184 24 H 0.082 0.918 25 C -0.022 4.022 26 N -0.926 5.926 27 Si 0.889 3.111 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.288 1.288 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.049 0.951 49 H 0.115 0.885 50 H 0.002 0.998 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.099 8.521 13.099 16.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.017 4.017 3 C -0.201 4.201 4 C -0.051 4.051 5 N -0.197 5.197 6 C -0.022 4.022 7 C -0.171 4.171 8 C 0.357 3.643 9 O -0.349 6.349 10 N -0.329 5.329 11 C -0.014 4.014 12 C -0.172 4.172 13 C -0.154 4.154 14 C -0.164 4.164 15 C 0.038 3.962 16 H 0.071 0.929 17 C 0.016 3.984 18 H 0.127 0.873 19 C -0.170 4.170 20 C -0.181 4.181 21 C 0.016 3.984 22 N -0.298 5.298 23 C -0.313 4.313 24 H 0.099 0.901 25 C -0.216 4.216 26 N -0.577 5.577 27 Si 0.720 3.280 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.215 1.215 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.154 0.846 35 H 0.173 0.827 36 H 0.177 0.823 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.118 0.882 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.068 0.932 49 H 0.132 0.868 50 H 0.020 0.980 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.380 8.376 12.408 15.598 hybrid contribution 0.193 0.504 -0.169 0.565 sum -4.187 8.880 12.239 15.690 Atomic orbital electron populations 1.20835 0.89808 1.03074 1.03484 1.20310 0.96883 0.91570 0.92900 1.21912 0.95568 0.98315 1.04277 1.22844 0.91707 0.96347 0.94244 1.67701 1.40869 0.98293 1.12886 1.23034 0.90540 0.96474 0.92129 1.21232 0.95637 0.95169 1.05094 1.17646 0.81567 0.82661 0.82389 1.90797 1.38100 1.72560 1.33443 1.47881 1.54006 1.15644 1.15408 1.21561 0.94049 0.98054 0.87751 1.21820 0.98193 0.95523 1.01700 1.21515 0.99356 0.96272 0.98251 1.21919 0.99885 0.97408 0.97220 1.22087 0.93634 0.79950 1.00520 0.92892 1.22358 0.91316 0.97377 0.87353 0.87339 1.22681 0.98293 0.97948 0.98058 1.22938 1.01187 0.97837 0.96122 1.22138 0.88319 0.84811 1.03125 1.44277 1.26432 1.11895 1.47223 1.19329 1.01147 0.97883 1.12907 0.90096 1.24711 0.99959 0.97234 0.99687 1.69641 1.38346 1.21187 1.28549 0.86521 0.82495 0.80663 0.78285 1.21324 1.21730 1.21520 0.89753 0.90948 0.91101 0.84573 0.82724 0.82259 0.90710 0.92074 0.91606 0.91020 0.92967 0.92378 0.92151 0.88247 0.92781 0.92918 0.92573 0.93193 0.86775 0.97962 0.94252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.60 36.01 0.35 -1.07 16 2 C -0.01 -0.12 5.95 -103.91 -0.62 -0.74 16 3 C -0.18 -2.19 9.82 -39.50 -0.39 -2.57 16 4 C 0.10 1.37 11.17 -17.47 -0.20 1.18 16 5 N -0.49 -8.11 10.35 -12.91 -0.13 -8.24 16 6 C 0.14 2.42 9.02 -17.13 -0.15 2.27 16 7 C -0.17 -2.87 4.33 -104.82 -0.45 -3.32 16 8 C 0.57 10.88 2.81 -12.33 -0.03 10.85 16 9 O -0.47 -10.73 10.34 5.32 0.06 -10.68 16 10 N -0.60 -10.14 2.83 -166.59 -0.47 -10.61 16 11 C 0.11 1.50 6.16 -3.93 -0.02 1.48 16 12 C -0.13 -1.81 6.06 -26.83 -0.16 -1.97 16 13 C -0.12 -1.62 5.89 -26.69 -0.16 -1.77 16 14 C -0.13 -2.20 4.95 -26.61 -0.13 -2.33 16 15 C 0.14 2.51 2.52 -67.60 -0.17 2.34 16 16 H 0.05 0.84 8.09 -51.93 -0.42 0.42 16 17 C 0.12 2.54 2.33 -66.96 -0.16 2.39 16 18 H 0.11 2.49 4.91 -56.84 -0.28 2.21 16 19 C -0.13 -2.38 6.33 -24.90 -0.16 -2.54 16 20 C -0.14 -2.85 7.08 -24.58 -0.17 -3.03 16 21 C 0.14 3.46 6.12 -2.53 -0.02 3.44 16 22 N -0.58 -14.16 1.92 -162.57 -0.31 -14.47 16 23 C -0.18 -4.94 7.40 -15.06 -0.11 -5.05 16 24 H 0.08 2.09 3.11 -52.49 -0.16 1.93 16 25 C -0.02 -0.64 5.48 -17.43 -0.10 -0.74 16 26 N -0.93 -27.54 10.02 55.49 0.56 -26.98 16 27 Si 0.89 23.18 29.55 -169.99 -5.02 18.16 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 29 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 30 H -0.29 -7.70 7.11 56.52 0.40 -7.29 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.97 6.95 -51.93 -0.36 0.61 16 33 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.16 3.05 7.92 -52.48 -0.42 2.64 16 37 H 0.07 1.01 5.30 -51.93 -0.28 0.74 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.03 7.07 -51.93 -0.37 0.66 16 44 H 0.10 2.19 6.44 -51.93 -0.33 1.86 16 45 H 0.05 0.91 6.74 -51.93 -0.35 0.56 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.11 3.23 5.52 -51.92 -0.29 2.94 16 50 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 51 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -32.06 375.41 -10.41 -42.47 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.88 Total: 5.89 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.86 Total: -1.19 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.36 Total: -60.31 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.06 Total: -10.68 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.02 Total: 18.16 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.06 -10.41 -42.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025215451.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.484 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds