Wall clock time and date at job start Wed Apr 1 2020 03:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38392 * 120.85347 * 2 1 4 4 C 1.38314 * 119.30182 * 180.02562 * 3 2 1 5 5 N 1.31956 * 121.08357 * 0.25811 * 4 3 2 6 6 C 1.31667 * 121.87489 * 359.46493 * 5 4 3 7 7 C 1.39567 * 120.56759 * 0.53341 * 6 5 4 8 8 C 1.47837 * 120.55811 * 179.76392 * 7 6 5 9 9 O 1.21554 * 119.99745 * 244.31149 * 8 7 6 10 10 N 1.34779 * 120.00383 * 64.31475 * 8 7 6 11 11 C 1.46927 * 120.62582 * 4.85624 * 10 8 7 12 12 C 1.52763 * 109.00456 * 233.58416 * 11 10 8 13 13 C 1.53044 * 109.38408 * 305.58871 * 12 11 10 14 14 C 1.53036 * 109.53511 * 61.24209 * 13 12 11 15 15 C 1.46922 * 120.62875 * 185.13887 * 10 8 7 16 16 H 1.09005 * 109.58313 * 246.15201 * 15 10 8 17 17 C 1.52996 * 109.59214 * 6.43604 * 15 10 8 18 18 H 1.09005 * 109.87374 * 314.08345 * 17 15 10 19 19 C 1.54319 * 109.88553 * 192.90286 * 17 15 10 20 20 C 1.55151 * 102.94616 * 218.39088 * 19 17 15 21 21 C 1.54911 * 101.57986 * 35.50264 * 20 19 17 22 22 N 1.47023 * 109.88070 * 75.09657 * 17 15 10 23 23 C 1.36940 * 125.64695 * 298.32256 * 22 17 15 24 24 H 1.07998 * 120.00029 * 5.79805 * 23 22 17 25 25 C 1.38817 * 119.99652 * 185.79655 * 23 22 17 26 26 N 1.31614 * 120.00106 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99828 * 180.02562 * 25 23 22 28 28 H 1.48505 * 109.47183 * 59.99670 * 27 25 23 29 29 H 1.48498 * 109.47370 * 179.97438 * 27 25 23 30 30 H 1.48505 * 109.47217 * 300.00239 * 27 25 23 31 31 H 1.08992 * 109.47369 * 85.02732 * 1 2 3 32 32 H 1.09003 * 109.47335 * 205.02839 * 1 2 3 33 33 H 1.09000 * 109.46962 * 325.02806 * 1 2 3 34 34 H 1.07993 * 120.35167 * 0.02562 * 3 2 1 35 35 H 1.08002 * 119.45824 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.71580 * 180.24317 * 6 5 4 37 37 H 1.08996 * 109.58885 * 353.42153 * 11 10 8 38 38 H 1.09005 * 109.58327 * 113.84729 * 11 10 8 39 39 H 1.09000 * 109.55835 * 185.55714 * 12 11 10 40 40 H 1.08993 * 109.35875 * 65.50249 * 12 11 10 41 41 H 1.08999 * 109.45961 * 301.22005 * 13 12 11 42 42 H 1.08998 * 109.44531 * 181.25320 * 13 12 11 43 43 H 1.09000 * 109.49651 * 178.68136 * 14 13 12 44 44 H 1.09007 * 109.49742 * 58.58693 * 14 13 12 45 45 H 1.08996 * 110.71952 * 336.75592 * 19 17 15 46 46 H 1.09007 * 110.71752 * 100.02665 * 19 17 15 47 47 H 1.09005 * 111.00700 * 277.43037 * 20 19 17 48 48 H 1.09004 * 111.04019 * 153.59175 * 20 19 17 49 49 H 1.09009 * 110.36606 * 204.15483 * 21 20 19 50 50 H 1.08998 * 110.46146 * 81.87748 * 21 20 19 51 51 H 0.97001 * 119.99841 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1506 -0.0005 5 7 4.2498 0.0025 -0.0061 6 6 3.6197 -1.1536 -0.0010 7 6 2.2249 -1.2017 -0.0005 8 6 1.5176 -2.4999 0.0000 9 8 0.8258 -2.8155 -0.9483 10 7 1.6398 -3.3336 1.0520 11 6 2.3849 -2.9229 2.2499 12 6 3.4459 -3.9768 2.5615 13 6 2.7798 -5.3500 2.6751 14 6 2.1166 -5.7088 1.3434 15 6 1.0357 -4.6725 1.0201 16 1 0.2392 -4.7317 1.7620 17 6 0.4613 -4.9432 -0.3718 18 1 -0.1069 -4.0778 -0.7129 19 6 -0.4479 -6.1894 -0.3312 20 6 -0.1350 -6.8920 -1.6786 21 6 1.3769 -6.5957 -1.8401 22 7 1.5517 -5.2290 -1.3157 23 6 2.5619 -4.3680 -1.6526 24 1 2.6558 -3.4202 -1.1436 25 6 3.4652 -4.7137 -2.6484 26 7 3.3504 -5.8686 -3.2690 27 14 4.8436 -3.5395 -3.1075 28 1 5.6980 -3.2902 -1.9187 29 1 5.6648 -4.1392 -4.1897 30 1 4.2642 -2.2559 -3.5785 31 1 -0.3633 0.0891 -1.0237 32 1 -0.3634 -0.9312 0.4348 33 1 -0.3633 0.8421 0.5890 34 1 1.6966 2.1345 0.0004 35 1 4.1558 2.0763 -0.0010 36 1 4.1871 -2.0726 -0.0019 37 1 2.8677 -1.9627 2.0686 38 1 1.7006 -2.8365 3.0940 39 1 3.9379 -3.7321 3.5028 40 1 4.1833 -3.9954 1.7590 41 1 2.0252 -5.3237 3.4612 42 1 3.5327 -6.0994 2.9194 43 1 1.6625 -6.6970 1.4177 44 1 2.8666 -5.7111 0.5524 45 1 -0.1844 -6.8318 0.5090 46 1 -1.4976 -5.8995 -0.2821 47 1 -0.7090 -6.4494 -2.4927 48 1 -0.3180 -7.9646 -1.6125 49 1 1.6616 -6.6379 -2.8915 50 1 1.9681 -7.3034 -1.2590 51 1 3.9819 -6.1102 -3.9646 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025215451.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:05 Heat of formation + Delta-G solvation = 59.749166 kcal Electronic energy + Delta-G solvation = -33651.557043 eV Core-core repulsion = 29745.757233 eV Total energy + Delta-G solvation = -3905.799810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.29960 -40.80237 -38.61036 -38.06093 -34.93564 -34.50914 -33.84926 -32.84771 -31.80328 -30.92743 -29.01365 -28.67353 -26.68116 -25.94701 -25.00254 -23.93657 -23.31089 -21.87160 -21.79115 -21.05208 -20.03421 -18.96298 -18.17790 -17.64140 -17.40360 -17.21905 -16.62116 -16.09637 -15.80724 -15.58408 -15.40626 -15.31924 -14.98984 -14.72076 -14.58159 -14.44216 -14.06014 -13.84935 -13.72691 -13.66903 -13.59721 -13.44084 -13.33944 -12.97212 -12.87524 -12.73515 -12.60491 -12.34032 -12.16642 -11.95002 -11.78332 -11.55961 -11.53068 -11.38459 -11.16646 -10.99765 -10.70734 -10.57243 -10.51861 -10.18489 -9.56847 -9.39439 -8.46667 -7.57383 -4.95654 -0.13833 0.16153 1.31788 1.34669 1.38123 1.74579 2.13512 2.51766 2.69090 3.33398 3.46153 3.55523 3.69477 3.77630 3.84990 3.88874 4.02633 4.03459 4.13056 4.23097 4.29419 4.36875 4.41655 4.45246 4.47512 4.52093 4.57827 4.65964 4.67162 4.71507 4.79482 4.85690 4.91775 4.93935 5.02678 5.08588 5.11676 5.15597 5.22036 5.26260 5.27256 5.28763 5.34740 5.60518 5.63911 5.68332 5.77253 5.81918 5.97137 6.07702 6.52397 6.57804 6.87674 7.30858 7.42289 8.03148 8.65968 9.41435 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010002 B = 0.006302 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.733093 B = 4441.624264 C = 5313.663919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.015 4.015 3 C -0.162 4.162 4 C 0.105 3.895 5 N -0.513 5.513 6 C 0.117 3.883 7 C -0.187 4.187 8 C 0.568 3.432 9 O -0.523 6.523 10 N -0.596 5.596 11 C 0.108 3.892 12 C -0.131 4.131 13 C -0.109 4.109 14 C -0.119 4.119 15 C 0.145 3.855 16 H 0.088 0.912 17 C 0.114 3.886 18 H 0.094 0.906 19 C -0.119 4.119 20 C -0.131 4.131 21 C 0.141 3.859 22 N -0.586 5.586 23 C -0.157 4.157 24 H 0.092 0.908 25 C -0.089 4.089 26 N -0.956 5.956 27 Si 0.931 3.069 28 H -0.279 1.279 29 H -0.298 1.298 30 H -0.298 1.298 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.183 0.817 35 H 0.196 0.804 36 H 0.130 0.870 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.036 0.964 41 H 0.084 0.916 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.044 0.956 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.047 0.953 48 H 0.076 0.924 49 H 0.074 0.926 50 H -0.016 1.016 51 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.960 11.010 16.678 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.023 4.023 3 C -0.181 4.181 4 C -0.051 4.051 5 N -0.223 5.223 6 C -0.040 4.040 7 C -0.192 4.192 8 C 0.356 3.644 9 O -0.401 6.401 10 N -0.328 5.328 11 C -0.015 4.015 12 C -0.169 4.169 13 C -0.146 4.146 14 C -0.158 4.158 15 C 0.041 3.959 16 H 0.105 0.895 17 C 0.008 3.992 18 H 0.110 0.890 19 C -0.158 4.158 20 C -0.170 4.170 21 C 0.016 3.984 22 N -0.308 5.308 23 C -0.288 4.288 24 H 0.109 0.891 25 C -0.279 4.279 26 N -0.611 5.611 27 Si 0.764 3.236 28 H -0.205 1.205 29 H -0.225 1.225 30 H -0.226 1.226 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.201 0.799 35 H 0.212 0.788 36 H 0.147 0.853 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.055 0.945 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.066 0.934 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.002 0.998 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.242 10.872 16.062 20.375 hybrid contribution 0.710 -0.136 -1.195 1.397 sum -5.532 10.736 14.867 19.154 Atomic orbital electron populations 1.20852 0.88265 1.03909 1.03637 1.20697 0.98094 0.91306 0.92244 1.22388 0.95180 0.99206 1.01297 1.23580 0.92786 0.96376 0.92346 1.67671 1.41782 0.98908 1.13896 1.22613 0.90660 0.96290 0.94419 1.21138 0.95406 0.95424 1.07262 1.18007 0.80905 0.83454 0.82043 1.90770 1.40285 1.73882 1.35170 1.48004 1.53633 1.15080 1.16068 1.21796 0.94459 0.98017 0.87182 1.21812 0.97542 0.95495 1.02088 1.21476 1.00052 0.96394 0.96716 1.21768 0.98586 0.97773 0.97627 1.21947 0.94480 0.80398 0.99080 0.89478 1.22448 0.90491 0.98171 0.88104 0.88991 1.22658 0.99227 0.96614 0.97259 1.22784 0.97203 0.99735 0.97283 1.21895 0.91408 0.84799 1.00308 1.44456 1.26761 1.11490 1.48047 1.19751 1.00317 0.97831 1.10870 0.89067 1.25268 1.02509 0.98651 1.01443 1.69899 1.39004 1.22556 1.29635 0.85800 0.81129 0.78809 0.77911 1.20522 1.22481 1.22641 0.90392 0.92583 0.87180 0.79930 0.78760 0.85271 0.90695 0.88687 0.88233 0.94529 0.89789 0.91882 0.91769 0.93765 0.90759 0.90179 0.93417 0.90583 0.90818 0.99838 0.95617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.42 9.60 71.24 0.68 -1.73 16 2 C -0.02 -0.40 5.95 -19.40 -0.12 -0.51 16 3 C -0.16 -3.25 9.82 22.32 0.22 -3.03 16 4 C 0.11 2.41 11.17 84.69 0.95 3.36 16 5 N -0.51 -16.60 10.35 -194.74 -2.01 -18.61 16 6 C 0.12 4.26 9.02 85.04 0.77 5.03 16 7 C -0.19 -6.42 4.33 -19.99 -0.09 -6.51 16 8 C 0.57 21.85 2.81 86.78 0.24 22.10 16 9 O -0.52 -24.30 10.34 -3.89 -0.04 -24.34 16 10 N -0.60 -19.81 2.83 -799.24 -2.26 -22.07 16 11 C 0.11 2.73 6.16 86.22 0.53 3.26 16 12 C -0.13 -3.32 6.06 30.53 0.19 -3.14 16 13 C -0.11 -2.76 5.89 30.62 0.18 -2.58 16 14 C -0.12 -4.07 4.95 30.67 0.15 -3.92 16 15 C 0.15 4.90 2.52 44.97 0.11 5.01 16 16 H 0.09 2.42 8.09 -2.38 -0.02 2.40 16 17 C 0.11 4.67 2.33 45.34 0.11 4.78 16 18 H 0.09 4.26 4.91 -80.27 -0.39 3.86 16 19 C -0.12 -4.09 6.33 31.78 0.20 -3.89 16 20 C -0.13 -5.24 7.08 31.98 0.23 -5.01 16 21 C 0.14 7.26 6.12 86.86 0.53 7.79 16 22 N -0.59 -29.99 1.92 -668.26 -1.28 -31.27 16 23 C -0.16 -8.92 7.40 84.03 0.62 -8.29 16 24 H 0.09 4.96 3.11 -2.91 -0.01 4.95 16 25 C -0.09 -5.43 5.48 84.86 0.47 -4.96 16 26 N -0.96 -60.90 10.02 21.65 0.22 -60.68 16 27 Si 0.93 50.67 29.55 68.60 2.03 52.70 16 28 H -0.28 -14.50 7.11 99.48 0.71 -13.80 16 29 H -0.30 -16.37 7.11 99.48 0.71 -15.67 16 30 H -0.30 -16.48 7.11 99.48 0.71 -15.78 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 1.42 6.95 -2.39 -0.02 1.40 16 33 H 0.11 1.50 8.13 -2.39 -0.02 1.48 16 34 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.20 2.79 8.06 -2.91 -0.02 2.76 16 36 H 0.13 5.31 7.92 -2.91 -0.02 5.29 16 37 H 0.07 1.94 5.30 -2.39 -0.01 1.93 16 38 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.06 2.10 7.07 -2.39 -0.02 2.09 16 44 H 0.04 2.02 6.44 -2.38 -0.02 2.00 16 45 H 0.07 2.26 6.74 -2.39 -0.02 2.25 16 46 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 47 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 48 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 49 H 0.07 4.46 5.52 -2.38 -0.01 4.45 16 50 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 51 H 0.23 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -78.30 375.41 3.17 -75.13 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.55 Total: 21.41 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 5.97 Total: 7.74 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -5.34 Total: -132.64 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.04 Total: -24.34 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.03 Total: 52.70 kcal Total: -78.30 3.17 -75.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025215451.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.879 kcal (2) G-P(sol) polarization free energy of solvation -78.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds