Wall clock time and date at job start Wed Apr 1 2020 03:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38399 * 120.85427 * 2 1 4 4 C 1.38306 * 119.30254 * 179.97438 * 3 2 1 5 5 N 1.31955 * 121.08174 * 359.97438 * 4 3 2 6 6 C 1.31663 * 121.88092 * 359.72307 * 5 4 3 7 7 C 1.39562 * 120.56332 * 0.54478 * 6 5 4 8 8 C 1.47847 * 120.56074 * 179.74982 * 7 6 5 9 9 O 1.21544 * 120.00057 * 124.01797 * 8 7 6 10 10 N 1.34780 * 119.99506 * 304.01653 * 8 7 6 11 11 C 1.46929 * 120.63276 * 0.95075 * 10 8 7 12 12 C 1.53190 * 108.77473 * 126.40895 * 11 10 8 13 13 C 1.53106 * 109.33386 * 54.63480 * 12 11 10 14 14 C 1.53043 * 109.50321 * 298.65851 * 13 12 11 15 15 C 1.46928 * 120.62606 * 180.96303 * 10 8 7 16 16 H 1.08999 * 109.69978 * 113.73806 * 15 10 8 17 17 C 1.52995 * 109.58806 * 353.37854 * 15 10 8 18 18 H 1.08999 * 109.87511 * 53.83645 * 17 15 10 19 19 C 1.54321 * 109.88578 * 292.82095 * 17 15 10 20 20 C 1.55401 * 102.82822 * 218.48200 * 19 17 15 21 21 C 1.54913 * 101.66777 * 35.33817 * 20 19 17 22 22 N 1.47025 * 109.88206 * 174.85125 * 17 15 10 23 23 C 1.36942 * 125.64686 * 298.31942 * 22 17 15 24 24 H 1.08002 * 119.99994 * 153.82562 * 23 22 17 25 25 C 1.38809 * 120.00340 * 333.83352 * 23 22 17 26 26 N 1.31619 * 120.00307 * 158.78742 * 25 23 22 27 27 Si 1.86803 * 119.99910 * 338.78519 * 25 23 22 28 28 H 1.48504 * 109.47319 * 88.89444 * 27 25 23 29 29 H 1.48498 * 109.47443 * 208.89533 * 27 25 23 30 30 H 1.48502 * 109.46956 * 328.89744 * 27 25 23 31 31 H 1.08999 * 109.47387 * 272.53120 * 1 2 3 32 32 H 1.08999 * 109.47363 * 32.53211 * 1 2 3 33 33 H 1.08998 * 109.47419 * 152.52852 * 1 2 3 34 34 H 1.07998 * 120.34784 * 359.94686 * 3 2 1 35 35 H 1.08000 * 119.46245 * 180.02562 * 4 3 2 36 36 H 1.08003 * 119.72231 * 180.26463 * 6 5 4 37 37 H 1.08996 * 109.58102 * 246.19564 * 11 10 8 38 38 H 1.08991 * 109.58573 * 6.47692 * 11 10 8 39 39 H 1.09008 * 109.49601 * 174.58318 * 12 11 10 40 40 H 1.08993 * 109.50031 * 294.67775 * 12 11 10 41 41 H 1.08996 * 109.50893 * 178.62939 * 13 12 11 42 42 H 1.09006 * 109.45049 * 58.64444 * 13 12 11 43 43 H 1.09000 * 109.49195 * 301.37713 * 14 13 12 44 44 H 1.08993 * 109.50001 * 181.31419 * 14 13 12 45 45 H 1.09009 * 110.71703 * 336.75204 * 19 17 15 46 46 H 1.08995 * 110.72474 * 100.02411 * 19 17 15 47 47 H 1.08998 * 110.89349 * 277.26198 * 20 19 17 48 48 H 1.09001 * 111.03516 * 153.47001 * 20 19 17 49 49 H 1.08996 * 110.36420 * 204.24227 * 21 20 19 50 50 H 1.08999 * 110.36989 * 81.91309 * 21 20 19 51 51 H 0.97001 * 119.99737 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1507 0.0005 5 7 4.2497 0.0025 0.0016 6 6 3.6197 -1.1536 0.0075 7 6 2.2249 -1.2017 0.0016 8 6 1.5175 -2.4999 0.0027 9 8 0.7058 -2.7490 0.8724 10 7 1.7728 -3.4072 -0.9608 11 6 2.7663 -3.1289 -2.0069 12 6 3.7782 -4.2784 -2.0440 13 6 3.0332 -5.6041 -2.2215 14 6 2.0936 -5.8251 -1.0338 15 6 1.0625 -4.6932 -0.9851 16 1 0.4232 -4.7432 -1.8665 17 6 0.2084 -4.8313 0.2767 18 1 -0.4437 -3.9640 0.3796 19 6 1.1193 -4.9531 1.5164 20 6 0.3731 -5.9981 2.3916 21 6 -0.2157 -6.9446 1.3158 22 7 -0.5990 -6.0578 0.2022 23 6 -1.5502 -6.3308 -0.7444 24 1 -1.7867 -7.3550 -0.9925 25 6 -2.2102 -5.2913 -1.3852 26 7 -2.7933 -5.4987 -2.5467 27 14 -2.2709 -3.5979 -0.5988 28 1 -1.0867 -2.8106 -1.0268 29 1 -3.5101 -2.8988 -1.0239 30 1 -2.2640 -3.7382 0.8796 31 1 -0.3634 0.0454 1.0266 32 1 -0.3634 0.8664 -0.5526 33 1 -0.3634 -0.9117 -0.4741 34 1 1.6965 2.1345 -0.0009 35 1 4.1558 2.0763 0.0010 36 1 4.1870 -2.0725 0.0125 37 1 2.2674 -3.0499 -2.9727 38 1 3.2801 -2.1940 -1.7834 39 1 4.4642 -4.1323 -2.8785 40 1 4.3398 -4.2990 -1.1102 41 1 3.7521 -6.4217 -2.2727 42 1 2.4521 -5.5734 -3.1433 43 1 2.6711 -5.8312 -0.1094 44 1 1.5805 -6.7799 -1.1486 45 1 2.1063 -5.3205 1.2352 46 1 1.1958 -3.9970 2.0343 47 1 -0.4192 -5.5248 2.9715 48 1 1.0669 -6.5302 3.0425 49 1 -1.0910 -7.4640 1.7056 50 1 0.5372 -7.6614 0.9881 51 1 -3.2548 -4.7724 -2.9943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025215453.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:14 Heat of formation + Delta-G solvation = 70.550911 kcal Electronic energy + Delta-G solvation = -33354.362523 eV Core-core repulsion = 29449.031112 eV Total energy + Delta-G solvation = -3905.331411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.18446 -39.82163 -37.39913 -36.89741 -33.99921 -32.93899 -32.43813 -31.90700 -30.69479 -29.80965 -28.10737 -27.48985 -25.19796 -24.23251 -23.90827 -23.03944 -22.24979 -21.05385 -20.41715 -19.85460 -18.66847 -17.47847 -16.84741 -16.60641 -16.21645 -15.64966 -15.48308 -14.98825 -14.79131 -14.54479 -14.37084 -14.10344 -13.76435 -13.55658 -13.36310 -13.20125 -13.02700 -12.83506 -12.81025 -12.78674 -12.49993 -11.99794 -11.83234 -11.72925 -11.43959 -11.38721 -11.02695 -10.85513 -10.74593 -10.52059 -10.34792 -10.26642 -10.08525 -9.92532 -9.74139 -9.64084 -9.61749 -9.30259 -9.25657 -8.77172 -8.41328 -8.02710 -6.77805 -5.92107 -3.23914 0.70291 1.03186 2.82401 3.17284 3.44229 3.54531 3.61324 3.70348 4.19238 4.47219 4.54074 4.59628 4.61954 4.86441 4.88219 5.00319 5.11418 5.19501 5.24446 5.33965 5.36097 5.44654 5.46245 5.52544 5.56879 5.58874 5.63349 5.72850 5.78146 5.79816 5.89221 5.98340 5.99735 6.00577 6.13865 6.20700 6.28865 6.31531 6.36266 6.41411 6.45021 6.55590 6.62434 6.71695 6.78707 6.97961 6.98930 7.03252 7.35739 7.66395 7.71463 7.92416 8.37407 8.46217 8.95696 9.76135 10.32917 11.23596 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.005458 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.169257 B = 5128.474866 C = 5843.232095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.005 3.995 3 C -0.178 4.178 4 C 0.110 3.890 5 N -0.491 5.491 6 C 0.131 3.869 7 C -0.172 4.172 8 C 0.548 3.452 9 O -0.503 6.503 10 N -0.592 5.592 11 C 0.099 3.901 12 C -0.131 4.131 13 C -0.121 4.121 14 C -0.123 4.123 15 C 0.136 3.864 16 H 0.087 0.913 17 C 0.146 3.854 18 H 0.089 0.911 19 C -0.130 4.130 20 C -0.138 4.138 21 C 0.132 3.868 22 N -0.607 5.607 23 C -0.240 4.240 24 H 0.086 0.914 25 C 0.027 3.973 26 N -0.908 5.908 27 Si 0.887 3.113 28 H -0.279 1.279 29 H -0.313 1.313 30 H -0.275 1.275 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.089 0.911 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.044 0.956 50 H 0.023 0.977 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.815 10.084 3.006 18.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.003 4.003 3 C -0.198 4.198 4 C -0.046 4.046 5 N -0.200 5.200 6 C -0.027 4.027 7 C -0.177 4.177 8 C 0.335 3.665 9 O -0.379 6.379 10 N -0.325 5.325 11 C -0.025 4.025 12 C -0.169 4.169 13 C -0.158 4.158 14 C -0.161 4.161 15 C 0.033 3.967 16 H 0.105 0.895 17 C 0.041 3.959 18 H 0.105 0.895 19 C -0.167 4.167 20 C -0.176 4.176 21 C 0.006 3.994 22 N -0.334 5.334 23 C -0.367 4.367 24 H 0.104 0.896 25 C -0.172 4.172 26 N -0.552 5.552 27 Si 0.720 3.280 28 H -0.207 1.207 29 H -0.242 1.242 30 H -0.201 1.201 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.103 0.897 45 H 0.078 0.922 46 H 0.107 0.893 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.063 0.937 50 H 0.041 0.959 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.096 9.964 3.260 18.379 hybrid contribution -0.986 1.020 0.165 1.428 sum 14.110 10.984 3.425 18.206 Atomic orbital electron populations 1.21024 0.89639 1.04037 1.03811 1.20385 0.97103 0.91504 0.91333 1.21999 0.95573 0.98497 1.03745 1.22858 0.91663 0.96347 0.93743 1.67688 1.40736 0.98252 1.13309 1.22919 0.90171 0.96503 0.93137 1.21102 0.95557 0.94874 1.06210 1.17993 0.83122 0.83126 0.82258 1.90787 1.33484 1.76899 1.36768 1.48151 1.40211 1.17499 1.26600 1.21889 0.90239 0.98607 0.91729 1.21905 0.97482 0.95399 1.02092 1.21561 0.98464 0.96235 0.99581 1.21958 0.96829 0.99890 0.97413 1.22014 0.92388 0.79366 1.02935 0.89507 1.21992 0.91996 0.91481 0.90479 0.89462 1.23174 0.97544 0.99282 0.96692 1.22828 0.99325 0.97961 0.97531 1.21661 0.96982 0.92865 0.87879 1.44981 1.41011 1.17864 1.29513 1.18602 1.12389 0.94149 1.11604 0.89646 1.25127 0.97612 0.97799 0.96644 1.69850 1.38954 1.32714 1.13656 0.86912 0.75199 0.85417 0.80478 1.20681 1.24232 1.20087 0.89530 0.90839 0.90183 0.84289 0.82467 0.82314 0.91307 0.90077 0.91012 0.91711 0.92072 0.91695 0.91778 0.89745 0.92207 0.89340 0.92031 0.92452 0.93735 0.95911 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 9.34 36.00 0.34 -1.47 16 2 C 0.01 0.07 5.95 -103.91 -0.62 -0.55 16 3 C -0.18 -1.86 9.81 -39.50 -0.39 -2.25 16 4 C 0.11 1.12 11.17 -17.47 -0.20 0.92 16 5 N -0.49 -6.00 10.35 -12.91 -0.13 -6.13 16 6 C 0.13 1.66 8.62 -17.13 -0.15 1.51 16 7 C -0.17 -2.52 4.88 -104.82 -0.51 -3.03 16 8 C 0.55 9.65 5.31 -12.33 -0.07 9.58 16 9 O -0.50 -10.34 8.74 5.33 0.05 -10.30 16 10 N -0.59 -10.09 2.95 -166.33 -0.49 -10.58 16 11 C 0.10 1.31 5.92 -3.71 -0.02 1.29 16 12 C -0.13 -1.49 6.08 -26.58 -0.16 -1.65 16 13 C -0.12 -1.64 5.89 -26.65 -0.16 -1.80 16 14 C -0.12 -2.08 4.96 -26.61 -0.13 -2.21 16 15 C 0.14 2.72 2.23 -67.60 -0.15 2.57 16 16 H 0.09 2.08 6.99 -51.93 -0.36 1.71 16 17 C 0.15 3.24 1.05 -66.95 -0.07 3.17 16 18 H 0.09 2.17 1.04 -52.47 -0.05 2.12 16 19 C -0.13 -2.49 5.10 -24.76 -0.13 -2.61 16 20 C -0.14 -2.54 7.09 -24.45 -0.17 -2.72 16 21 C 0.13 2.72 7.24 -2.53 -0.02 2.71 16 22 N -0.61 -14.80 2.46 -162.57 -0.40 -15.20 16 23 C -0.24 -6.76 10.10 -15.06 -0.15 -6.91 16 24 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 25 C 0.03 0.79 4.81 -17.43 -0.08 0.71 16 26 N -0.91 -27.80 13.97 55.49 0.78 -27.02 16 27 Si 0.89 23.76 23.79 -169.99 -4.04 19.72 16 28 H -0.28 -7.11 5.16 56.52 0.29 -6.82 16 29 H -0.31 -8.56 7.11 56.52 0.40 -8.16 16 30 H -0.27 -7.67 6.94 56.52 0.39 -7.28 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 33 H 0.08 1.42 5.78 -51.93 -0.30 1.12 16 34 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.16 1.78 7.57 -52.48 -0.40 1.38 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 0.96 4.49 -51.93 -0.23 0.73 16 39 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.03 5.54 -51.93 -0.29 0.74 16 44 H 0.08 1.61 7.96 -51.93 -0.41 1.19 16 45 H 0.06 1.05 5.22 -51.92 -0.27 0.78 16 46 H 0.09 1.76 5.62 -51.86 -0.29 1.47 16 47 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -32.89 369.26 -9.30 -42.20 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.79 Total: 4.50 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.84 Total: -2.76 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.25 Total: -58.93 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.05 Total: -10.30 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.04 Total: 19.72 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.89 -9.30 -42.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025215453.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.750 kcal (2) G-P(sol) polarization free energy of solvation -32.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds