Wall clock time and date at job start Wed Apr 1 2020 03:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38399 * 120.85427 * 2 1 4 4 C 1.38306 * 119.30254 * 179.97438 * 3 2 1 5 5 N 1.31955 * 121.08174 * 359.97438 * 4 3 2 6 6 C 1.31663 * 121.88092 * 359.72307 * 5 4 3 7 7 C 1.39562 * 120.56332 * 0.54478 * 6 5 4 8 8 C 1.47847 * 120.56074 * 179.74982 * 7 6 5 9 9 O 1.21544 * 120.00057 * 124.01797 * 8 7 6 10 10 N 1.34780 * 119.99506 * 304.01653 * 8 7 6 11 11 C 1.46929 * 120.63276 * 0.95075 * 10 8 7 12 12 C 1.53190 * 108.77473 * 126.40895 * 11 10 8 13 13 C 1.53106 * 109.33386 * 54.63480 * 12 11 10 14 14 C 1.53043 * 109.50321 * 298.65851 * 13 12 11 15 15 C 1.46928 * 120.62606 * 180.96303 * 10 8 7 16 16 H 1.08999 * 109.69978 * 113.73806 * 15 10 8 17 17 C 1.52995 * 109.58806 * 353.37854 * 15 10 8 18 18 H 1.08999 * 109.87511 * 53.83645 * 17 15 10 19 19 C 1.54321 * 109.88578 * 292.82095 * 17 15 10 20 20 C 1.55401 * 102.82822 * 218.48200 * 19 17 15 21 21 C 1.54913 * 101.66777 * 35.33817 * 20 19 17 22 22 N 1.47025 * 109.88206 * 174.85125 * 17 15 10 23 23 C 1.36942 * 125.64686 * 298.31942 * 22 17 15 24 24 H 1.08002 * 119.99994 * 153.82562 * 23 22 17 25 25 C 1.38809 * 120.00340 * 333.83352 * 23 22 17 26 26 N 1.31619 * 120.00307 * 158.78742 * 25 23 22 27 27 Si 1.86803 * 119.99910 * 338.78519 * 25 23 22 28 28 H 1.48504 * 109.47319 * 88.89444 * 27 25 23 29 29 H 1.48498 * 109.47443 * 208.89533 * 27 25 23 30 30 H 1.48502 * 109.46956 * 328.89744 * 27 25 23 31 31 H 1.08999 * 109.47387 * 272.53120 * 1 2 3 32 32 H 1.08999 * 109.47363 * 32.53211 * 1 2 3 33 33 H 1.08998 * 109.47419 * 152.52852 * 1 2 3 34 34 H 1.07998 * 120.34784 * 359.94686 * 3 2 1 35 35 H 1.08000 * 119.46245 * 180.02562 * 4 3 2 36 36 H 1.08003 * 119.72231 * 180.26463 * 6 5 4 37 37 H 1.08996 * 109.58102 * 246.19564 * 11 10 8 38 38 H 1.08991 * 109.58573 * 6.47692 * 11 10 8 39 39 H 1.09008 * 109.49601 * 174.58318 * 12 11 10 40 40 H 1.08993 * 109.50031 * 294.67775 * 12 11 10 41 41 H 1.08996 * 109.50893 * 178.62939 * 13 12 11 42 42 H 1.09006 * 109.45049 * 58.64444 * 13 12 11 43 43 H 1.09000 * 109.49195 * 301.37713 * 14 13 12 44 44 H 1.08993 * 109.50001 * 181.31419 * 14 13 12 45 45 H 1.09009 * 110.71703 * 336.75204 * 19 17 15 46 46 H 1.08995 * 110.72474 * 100.02411 * 19 17 15 47 47 H 1.08998 * 110.89349 * 277.26198 * 20 19 17 48 48 H 1.09001 * 111.03516 * 153.47001 * 20 19 17 49 49 H 1.08996 * 110.36420 * 204.24227 * 21 20 19 50 50 H 1.08999 * 110.36989 * 81.91309 * 21 20 19 51 51 H 0.97001 * 119.99737 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5993 1.1507 0.0005 5 7 4.2497 0.0025 0.0016 6 6 3.6197 -1.1536 0.0075 7 6 2.2249 -1.2017 0.0016 8 6 1.5175 -2.4999 0.0027 9 8 0.7058 -2.7490 0.8724 10 7 1.7728 -3.4072 -0.9608 11 6 2.7663 -3.1289 -2.0069 12 6 3.7782 -4.2784 -2.0440 13 6 3.0332 -5.6041 -2.2215 14 6 2.0936 -5.8251 -1.0338 15 6 1.0625 -4.6932 -0.9851 16 1 0.4232 -4.7432 -1.8665 17 6 0.2084 -4.8313 0.2767 18 1 -0.4437 -3.9640 0.3796 19 6 1.1193 -4.9531 1.5164 20 6 0.3731 -5.9981 2.3916 21 6 -0.2157 -6.9446 1.3158 22 7 -0.5990 -6.0578 0.2022 23 6 -1.5502 -6.3308 -0.7444 24 1 -1.7867 -7.3550 -0.9925 25 6 -2.2102 -5.2913 -1.3852 26 7 -2.7933 -5.4987 -2.5467 27 14 -2.2709 -3.5979 -0.5988 28 1 -1.0867 -2.8106 -1.0268 29 1 -3.5101 -2.8988 -1.0239 30 1 -2.2640 -3.7382 0.8796 31 1 -0.3634 0.0454 1.0266 32 1 -0.3634 0.8664 -0.5526 33 1 -0.3634 -0.9117 -0.4741 34 1 1.6965 2.1345 -0.0009 35 1 4.1558 2.0763 0.0010 36 1 4.1870 -2.0725 0.0125 37 1 2.2674 -3.0499 -2.9727 38 1 3.2801 -2.1940 -1.7834 39 1 4.4642 -4.1323 -2.8785 40 1 4.3398 -4.2990 -1.1102 41 1 3.7521 -6.4217 -2.2727 42 1 2.4521 -5.5734 -3.1433 43 1 2.6711 -5.8312 -0.1094 44 1 1.5805 -6.7799 -1.1486 45 1 2.1063 -5.3205 1.2352 46 1 1.1958 -3.9970 2.0343 47 1 -0.4192 -5.5248 2.9715 48 1 1.0669 -6.5302 3.0425 49 1 -1.0910 -7.4640 1.7056 50 1 0.5372 -7.6614 0.9881 51 1 -3.2548 -4.7724 -2.9943 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025215453.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:13 Heat of formation + Delta-G solvation = 49.378104 kcal Electronic energy + Delta-G solvation = -33355.280645 eV Core-core repulsion = 29449.031112 eV Total energy + Delta-G solvation = -3906.249533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.42350 -40.94531 -38.91695 -38.24331 -34.99372 -34.64010 -34.09429 -33.13898 -31.83532 -31.73466 -29.20534 -28.86523 -26.59730 -26.04231 -25.00160 -24.35038 -23.34562 -22.38709 -21.74162 -21.61747 -19.97444 -19.20014 -17.88524 -17.78759 -17.45612 -17.30013 -17.07686 -16.59971 -16.12040 -15.63676 -15.51878 -15.39298 -15.22410 -14.93566 -14.80644 -14.58810 -14.49999 -14.20557 -13.97432 -13.79642 -13.74120 -13.68865 -13.24488 -13.16111 -12.99854 -12.93708 -12.69318 -12.48650 -12.21000 -12.00778 -11.94064 -11.71235 -11.64500 -11.51567 -11.31863 -11.07330 -10.88595 -10.63182 -10.58475 -10.24342 -9.99246 -9.48403 -8.77876 -8.23167 -5.47929 -0.22820 0.11554 1.24050 1.28462 1.44403 1.58438 1.92377 2.35933 2.69146 3.03766 3.27173 3.45132 3.48967 3.58448 3.71380 3.83104 3.85148 3.90345 4.01378 4.05868 4.10190 4.19047 4.27965 4.33754 4.38493 4.40252 4.43542 4.50242 4.59839 4.66146 4.69314 4.73188 4.78452 4.83122 4.95220 4.97479 4.99308 5.04977 5.06994 5.15962 5.18471 5.21083 5.23554 5.28512 5.40148 5.49178 5.55420 5.58302 5.71769 5.79811 6.10044 6.40646 6.80748 6.83907 7.14733 7.57967 8.20517 8.96972 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.005458 C = 0.004791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.169257 B = 5128.474866 C = 5843.232095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.013 4.013 3 C -0.166 4.166 4 C 0.118 3.882 5 N -0.500 5.500 6 C 0.136 3.864 7 C -0.194 4.194 8 C 0.545 3.455 9 O -0.541 6.541 10 N -0.594 5.594 11 C 0.094 3.906 12 C -0.121 4.121 13 C -0.118 4.118 14 C -0.114 4.114 15 C 0.145 3.855 16 H 0.035 0.965 17 C 0.137 3.863 18 H 0.064 0.936 19 C -0.117 4.117 20 C -0.128 4.128 21 C 0.125 3.875 22 N -0.625 5.625 23 C -0.221 4.221 24 H 0.059 0.941 25 C -0.017 4.017 26 N -0.948 5.948 27 Si 0.949 3.051 28 H -0.270 1.270 29 H -0.323 1.323 30 H -0.294 1.294 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.035 0.965 34 H 0.173 0.827 35 H 0.198 0.802 36 H 0.173 0.827 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.079 0.921 44 H 0.056 0.944 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.048 0.952 48 H 0.099 0.901 49 H 0.038 0.962 50 H 0.041 0.959 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.975 12.301 3.994 22.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.022 4.022 3 C -0.186 4.186 4 C -0.037 4.037 5 N -0.209 5.209 6 C -0.022 4.022 7 C -0.199 4.199 8 C 0.334 3.666 9 O -0.420 6.420 10 N -0.327 5.327 11 C -0.028 4.028 12 C -0.158 4.158 13 C -0.155 4.155 14 C -0.152 4.152 15 C 0.040 3.960 16 H 0.053 0.947 17 C 0.032 3.968 18 H 0.080 0.920 19 C -0.155 4.155 20 C -0.166 4.166 21 C 0.001 3.999 22 N -0.352 5.352 23 C -0.350 4.350 24 H 0.076 0.924 25 C -0.212 4.212 26 N -0.595 5.595 27 Si 0.783 3.217 28 H -0.197 1.197 29 H -0.253 1.253 30 H -0.222 1.222 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.054 0.946 34 H 0.190 0.810 35 H 0.215 0.785 36 H 0.190 0.810 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.065 0.935 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.067 0.933 48 H 0.117 0.883 49 H 0.056 0.944 50 H 0.059 0.941 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 19.313 12.191 4.255 23.232 hybrid contribution -2.252 0.355 -0.117 2.283 sum 17.061 12.546 4.138 21.578 Atomic orbital electron populations 1.20950 0.90762 1.02932 1.03531 1.20509 0.96652 0.92527 0.92467 1.22316 0.95816 0.98495 1.01933 1.23550 0.91823 0.97092 0.91251 1.67796 1.40861 0.98623 1.13642 1.23037 0.89122 0.97475 0.92553 1.20915 0.96451 0.93446 1.09086 1.18498 0.82582 0.83951 0.81563 1.90753 1.35187 1.77748 1.38310 1.48200 1.40539 1.16412 1.27506 1.22143 0.89888 1.00595 0.90155 1.21890 0.96936 0.92703 1.04306 1.21548 0.98209 0.98748 0.97031 1.21842 0.96479 0.97039 0.99798 1.21543 0.92827 0.82284 0.99359 0.94721 1.22047 0.92387 0.89241 0.93110 0.91970 1.23065 0.97754 0.99497 0.95139 1.22792 0.99571 0.97221 0.96996 1.21850 0.97330 0.93170 0.87582 1.45137 1.40787 1.19331 1.29918 1.18522 1.12149 0.92834 1.11487 0.92364 1.25488 0.98462 1.00119 0.97119 1.69934 1.41141 1.33403 1.14990 0.85935 0.74723 0.82890 0.78157 1.19722 1.25345 1.22182 0.89920 0.88069 0.94596 0.80985 0.78533 0.81003 0.92275 0.88071 0.87829 0.90051 0.89579 0.93450 0.90230 0.92573 0.90125 0.89676 0.93289 0.88300 0.94369 0.94124 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 9.34 71.24 0.67 -2.82 16 2 C -0.01 -0.33 5.95 -19.40 -0.12 -0.45 16 3 C -0.17 -2.81 9.81 22.32 0.22 -2.59 16 4 C 0.12 1.85 11.17 84.69 0.95 2.79 16 5 N -0.50 -10.21 10.35 -194.76 -2.01 -12.22 16 6 C 0.14 3.04 8.62 85.04 0.73 3.77 16 7 C -0.19 -5.38 4.88 -19.99 -0.10 -5.47 16 8 C 0.55 19.10 5.31 86.79 0.46 19.56 16 9 O -0.54 -22.65 8.74 -3.85 -0.03 -22.69 16 10 N -0.59 -20.15 2.95 -798.43 -2.35 -22.50 16 11 C 0.09 2.35 5.92 86.36 0.51 2.86 16 12 C -0.12 -2.36 6.08 30.69 0.19 -2.17 16 13 C -0.12 -3.00 5.89 30.64 0.18 -2.82 16 14 C -0.11 -3.78 4.96 30.67 0.15 -3.63 16 15 C 0.14 5.91 2.23 44.97 0.10 6.01 16 16 H 0.03 1.77 6.99 -2.39 -0.02 1.75 16 17 C 0.14 6.20 1.05 45.34 0.05 6.25 16 18 H 0.06 3.22 1.04 -16.29 -0.02 3.20 16 19 C -0.12 -4.38 5.10 31.87 0.16 -4.22 16 20 C -0.13 -4.51 7.09 32.07 0.23 -4.29 16 21 C 0.13 5.17 7.24 86.86 0.63 5.79 16 22 N -0.63 -31.42 2.46 -668.27 -1.65 -33.07 16 23 C -0.22 -13.09 10.10 84.03 0.85 -12.24 16 24 H 0.06 3.71 8.06 -2.91 -0.02 3.68 16 25 C -0.02 -1.02 4.81 84.86 0.41 -0.61 16 26 N -0.95 -61.15 13.97 21.65 0.30 -60.84 16 27 Si 0.95 53.01 23.79 68.60 1.63 54.64 16 28 H -0.27 -14.47 5.16 99.48 0.51 -13.95 16 29 H -0.32 -18.26 7.11 99.48 0.71 -17.55 16 30 H -0.29 -17.13 6.94 99.48 0.69 -16.44 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 32 H 0.10 2.11 8.12 -2.39 -0.02 2.10 16 33 H 0.03 1.31 5.78 -2.39 -0.01 1.29 16 34 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.20 1.48 8.06 -2.91 -0.02 1.45 16 36 H 0.17 3.25 7.57 -2.91 -0.02 3.23 16 37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.10 2.14 4.49 -2.39 -0.01 2.13 16 39 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 42 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.08 2.38 5.54 -2.39 -0.01 2.36 16 44 H 0.06 2.17 7.96 -2.39 -0.02 2.15 16 45 H 0.08 2.63 5.22 -2.38 -0.01 2.62 16 46 H 0.09 3.33 5.62 -6.46 -0.04 3.29 16 47 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 49 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -78.10 369.26 2.85 -75.26 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.69 Total: 15.69 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 6.27 Total: 5.74 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -5.71 Total: -128.64 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.03 Total: -22.69 kcal Atomic # 14 Polarization: 53.01 SS G_CDS: 1.63 Total: 54.64 kcal Total: -78.10 2.85 -75.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025215453.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.634 kcal (2) G-P(sol) polarization free energy of solvation -78.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds