Wall clock time and date at job start Wed Apr 1 2020 03:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38403 * 120.85401 * 2 1 4 4 C 1.38305 * 119.30597 * 180.29766 * 3 2 1 5 5 N 1.31958 * 121.08121 * 359.71525 * 4 3 2 6 6 C 1.31666 * 121.87975 * 0.02562 * 5 4 3 7 7 C 1.39568 * 120.56542 * 0.02562 * 6 5 4 8 8 C 1.47834 * 120.56169 * 179.97438 * 7 6 5 9 9 O 1.21553 * 119.99992 * 234.06826 * 8 7 6 10 10 N 1.34782 * 119.99940 * 54.06730 * 8 7 6 11 11 C 1.46959 * 120.65405 * 7.29200 * 10 8 7 12 12 C 1.53193 * 108.88671 * 126.46410 * 11 10 8 13 13 C 1.53036 * 109.31404 * 54.55760 * 12 11 10 14 14 C 1.53048 * 109.53895 * 298.63377 * 13 12 11 15 15 C 1.46930 * 120.62991 * 187.11035 * 10 8 7 16 16 H 1.08989 * 109.58933 * 113.68094 * 15 10 8 17 17 C 1.52997 * 109.58577 * 353.39484 * 15 10 8 18 18 H 1.09004 * 110.00361 * 313.07884 * 17 15 10 19 19 C 1.54317 * 109.77409 * 74.23403 * 17 15 10 20 20 C 1.55163 * 102.86259 * 141.88454 * 19 17 15 21 21 C 1.54907 * 101.58192 * 324.30327 * 20 19 17 22 22 N 1.47021 * 109.88398 * 191.98227 * 17 15 10 23 23 C 1.36938 * 125.64603 * 61.67717 * 22 17 15 24 24 H 1.07996 * 120.00104 * 226.71105 * 23 22 17 25 25 C 1.38813 * 120.00087 * 46.71910 * 23 22 17 26 26 N 1.31616 * 119.99903 * 178.67883 * 25 23 22 27 27 Si 1.86796 * 119.99770 * 358.67259 * 25 23 22 28 28 H 1.48501 * 109.47276 * 276.39705 * 27 25 23 29 29 H 1.48498 * 109.47259 * 36.39828 * 27 25 23 30 30 H 1.48505 * 109.47057 * 156.39689 * 27 25 23 31 31 H 1.09001 * 109.47061 * 274.66332 * 1 2 3 32 32 H 1.08998 * 109.47053 * 34.67061 * 1 2 3 33 33 H 1.09002 * 109.46433 * 154.67278 * 1 2 3 34 34 H 1.08000 * 120.34832 * 359.97438 * 3 2 1 35 35 H 1.07991 * 119.46054 * 179.69657 * 4 3 2 36 36 H 1.07999 * 119.71892 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.59372 * 6.60699 * 11 10 8 38 38 H 1.08998 * 109.46730 * 246.24325 * 11 10 8 39 39 H 1.09006 * 109.50055 * 294.60421 * 12 11 10 40 40 H 1.08996 * 109.50069 * 174.50747 * 12 11 10 41 41 H 1.09000 * 109.46153 * 178.61541 * 13 12 11 42 42 H 1.09001 * 109.45095 * 58.64623 * 13 12 11 43 43 H 1.09003 * 109.49653 * 301.41434 * 14 13 12 44 44 H 1.09002 * 109.52547 * 181.33245 * 14 13 12 45 45 H 1.09001 * 110.92330 * 23.46914 * 19 17 15 46 46 H 1.08994 * 110.74429 * 260.21466 * 19 17 15 47 47 H 1.09004 * 110.99864 * 206.22905 * 20 19 17 48 48 H 1.08990 * 111.00224 * 82.38254 * 20 19 17 49 49 H 1.09000 * 110.36653 * 278.17155 * 21 20 19 50 50 H 1.08995 * 110.46135 * 155.89875 * 21 20 19 51 51 H 0.97002 * 119.99670 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1882 0.0000 4 6 3.5994 1.1508 -0.0063 5 7 4.2498 0.0027 -0.0066 6 6 3.6198 -1.1535 -0.0016 7 6 2.2250 -1.2017 0.0039 8 6 1.5177 -2.4998 0.0090 9 8 0.6813 -2.7396 -0.8398 10 7 1.8004 -3.4176 0.9547 11 6 2.6885 -3.0869 2.0780 12 6 1.9705 -3.4147 3.3909 13 6 1.5073 -4.8730 3.3641 14 6 0.5218 -5.0759 2.2109 15 6 1.2234 -4.7670 0.8846 16 1 2.0161 -5.4949 0.7124 17 6 0.2095 -4.8324 -0.2593 18 1 -0.4546 -3.9690 -0.2188 19 6 0.9506 -4.8648 -1.6125 20 6 0.0945 -5.8500 -2.4516 21 6 -0.3440 -6.8749 -1.3760 22 7 -0.5753 -6.0718 -0.1616 23 6 -1.3907 -6.4198 0.8821 24 1 -1.3356 -7.4131 1.3024 25 6 -2.2883 -5.4960 1.3996 26 7 -3.0902 -5.8385 2.3854 27 14 -2.3578 -3.7666 0.6969 28 1 -1.3064 -2.9317 1.3315 29 1 -2.1304 -3.8187 -0.7696 30 1 -3.6920 -3.1745 0.9702 31 1 -0.3633 0.0836 1.0243 32 1 -0.3633 0.8452 -0.5846 33 1 -0.3632 -0.9289 -0.4396 34 1 1.6966 2.1346 -0.0004 35 1 4.1557 2.0764 -0.0113 36 1 4.1873 -2.0724 -0.0016 37 1 2.9328 -2.0249 2.0504 38 1 3.6024 -3.6763 2.0043 39 1 1.1062 -2.7605 3.5062 40 1 2.6542 -3.2655 4.2266 41 1 1.0177 -5.1160 4.3072 42 1 2.3694 -5.5251 3.2240 43 1 -0.3289 -4.4061 2.3372 44 1 0.1739 -6.1089 2.2065 45 1 1.9658 -5.2427 -1.4914 46 1 0.9608 -3.8760 -2.0708 47 1 0.6953 -6.3283 -3.2252 48 1 -0.7686 -5.3456 -2.8856 49 1 0.4467 -7.6051 -1.2031 50 1 -1.2627 -7.3766 -1.6798 51 1 -3.7171 -5.1928 2.7473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025215454.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:19 Heat of formation + Delta-G solvation = 68.844986 kcal Electronic energy + Delta-G solvation = -33390.335975 eV Core-core repulsion = 29484.930589 eV Total energy + Delta-G solvation = -3905.405386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.11966 -39.76865 -37.34914 -36.87909 -33.99912 -33.00221 -32.50004 -31.77123 -30.69467 -29.74115 -28.07134 -27.39815 -25.11563 -24.39846 -23.87650 -22.70388 -22.02028 -20.98751 -19.98135 -19.85583 -19.16512 -17.52110 -16.77996 -16.58790 -16.24598 -15.83409 -15.32811 -14.90746 -14.77582 -14.35978 -14.26307 -13.99762 -13.88549 -13.59317 -13.08367 -12.96773 -12.89431 -12.88633 -12.79738 -12.65871 -12.38813 -12.22801 -11.94701 -11.74965 -11.38639 -11.22855 -10.99772 -10.88333 -10.81266 -10.41679 -10.25068 -10.09478 -9.91740 -9.90961 -9.63839 -9.57982 -9.46286 -9.28671 -9.24658 -8.76397 -8.33300 -8.05918 -6.47195 -5.95911 -3.51118 0.69463 1.03112 2.79533 3.19234 3.38419 3.48302 3.61791 3.63721 4.19459 4.49765 4.53114 4.55033 4.60710 4.88767 4.94999 5.12906 5.19496 5.24821 5.30223 5.34714 5.38146 5.47221 5.51972 5.54984 5.64978 5.67989 5.72364 5.75446 5.80862 5.89805 5.98346 6.02007 6.12224 6.15768 6.22467 6.35155 6.36114 6.38102 6.42761 6.45096 6.59336 6.72564 6.77787 6.87099 6.92828 7.03945 7.15983 7.41101 7.55032 7.67470 7.72226 8.11672 8.38011 8.47056 8.93391 9.68253 10.37864 11.15166 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.005097 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.376949 B = 5492.532817 C = 5663.155222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.006 3.994 3 C -0.179 4.179 4 C 0.110 3.890 5 N -0.491 5.491 6 C 0.133 3.867 7 C -0.173 4.173 8 C 0.545 3.455 9 O -0.502 6.502 10 N -0.595 5.595 11 C 0.108 3.892 12 C -0.134 4.134 13 C -0.123 4.123 14 C -0.128 4.128 15 C 0.141 3.859 16 H 0.062 0.938 17 C 0.139 3.861 18 H 0.084 0.916 19 C -0.124 4.124 20 C -0.138 4.138 21 C 0.132 3.868 22 N -0.611 5.611 23 C -0.248 4.248 24 H 0.079 0.921 25 C 0.045 3.955 26 N -0.905 5.905 27 Si 0.898 3.102 28 H -0.280 1.280 29 H -0.263 1.263 30 H -0.313 1.313 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.139 0.861 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.118 0.882 45 H 0.046 0.954 46 H 0.097 0.903 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.020 0.980 50 H 0.046 0.954 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.247 11.468 -2.010 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.002 4.002 3 C -0.199 4.199 4 C -0.046 4.046 5 N -0.200 5.200 6 C -0.025 4.025 7 C -0.178 4.178 8 C 0.333 3.667 9 O -0.379 6.379 10 N -0.328 5.328 11 C -0.016 4.016 12 C -0.172 4.172 13 C -0.160 4.160 14 C -0.165 4.165 15 C 0.038 3.962 16 H 0.080 0.920 17 C 0.034 3.966 18 H 0.101 0.899 19 C -0.161 4.161 20 C -0.177 4.177 21 C 0.006 3.994 22 N -0.338 5.338 23 C -0.376 4.376 24 H 0.096 0.904 25 C -0.156 4.156 26 N -0.546 5.546 27 Si 0.730 3.270 28 H -0.208 1.208 29 H -0.189 1.189 30 H -0.242 1.242 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.157 0.843 35 H 0.175 0.825 36 H 0.176 0.824 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.136 0.864 45 H 0.065 0.935 46 H 0.114 0.886 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.038 0.962 50 H 0.064 0.936 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.506 11.334 -2.268 17.777 hybrid contribution -0.820 1.110 -0.042 1.381 sum 12.686 12.443 -2.310 17.919 Atomic orbital electron populations 1.21126 0.89765 1.05382 1.03254 1.20382 0.97114 0.91498 0.91247 1.22002 0.95579 0.98525 1.03807 1.22860 0.91668 0.96358 0.93673 1.67691 1.40762 0.98269 1.13289 1.22933 0.90174 0.96481 0.92894 1.21074 0.95539 0.94908 1.06302 1.18082 0.83526 0.83086 0.82023 1.90772 1.32051 1.76844 1.38261 1.48264 1.47569 1.13353 1.23578 1.21771 0.92792 1.00544 0.86459 1.21914 1.00373 0.98840 0.96068 1.21646 0.99536 0.94514 1.00349 1.22448 0.96743 1.06622 0.90716 1.22171 0.95508 0.79577 0.98949 0.92048 1.22099 0.91927 0.91892 0.90669 0.89910 1.23082 0.96744 0.99837 0.96481 1.22784 0.99397 0.98120 0.97355 1.21701 0.97703 0.93169 0.86787 1.44858 1.50573 1.20382 1.17979 1.18294 1.11237 1.00059 1.08044 0.90395 1.25574 0.94203 0.98891 0.96947 1.69768 1.22840 1.34990 1.26978 0.86839 0.74486 0.84950 0.80701 1.20771 1.18900 1.24193 0.90368 0.90547 0.88754 0.84334 0.82501 0.82382 0.90702 0.91376 0.91883 0.91445 0.92001 0.92657 0.91388 0.86366 0.93513 0.88564 0.92582 0.92033 0.96208 0.93609 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.75 36.01 0.35 -1.55 16 2 C 0.01 0.08 5.95 -103.91 -0.62 -0.54 16 3 C -0.18 -1.85 9.82 -39.50 -0.39 -2.23 16 4 C 0.11 1.12 11.17 -17.47 -0.20 0.92 16 5 N -0.49 -5.99 10.35 -12.91 -0.13 -6.12 16 6 C 0.13 1.68 9.06 -17.13 -0.16 1.53 16 7 C -0.17 -2.49 4.57 -104.82 -0.48 -2.97 16 8 C 0.55 9.46 6.20 -12.33 -0.08 9.38 16 9 O -0.50 -10.13 7.87 5.32 0.04 -10.09 16 10 N -0.59 -10.03 2.98 -166.30 -0.50 -10.53 16 11 C 0.11 1.44 5.61 -3.69 -0.02 1.42 16 12 C -0.13 -1.88 6.08 -26.61 -0.16 -2.04 16 13 C -0.12 -2.00 5.88 -26.69 -0.16 -2.16 16 14 C -0.13 -2.65 3.73 -26.61 -0.10 -2.75 16 15 C 0.14 2.76 2.65 -67.60 -0.18 2.58 16 16 H 0.06 1.16 7.84 -51.94 -0.41 0.75 16 17 C 0.14 3.06 1.23 -66.96 -0.08 2.98 16 18 H 0.08 2.02 1.02 -51.64 -0.05 1.97 16 19 C -0.12 -2.42 5.31 -24.90 -0.13 -2.56 16 20 C -0.14 -2.61 7.08 -24.58 -0.17 -2.78 16 21 C 0.13 2.78 7.23 -2.53 -0.02 2.76 16 22 N -0.61 -14.76 2.62 -162.58 -0.43 -15.18 16 23 C -0.25 -6.75 7.13 -15.06 -0.11 -6.86 16 24 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 25 C 0.05 1.28 4.31 -17.43 -0.08 1.21 16 26 N -0.91 -26.91 13.97 55.49 0.78 -26.13 16 27 Si 0.90 23.59 22.98 -169.99 -3.91 19.69 16 28 H -0.28 -7.15 6.54 56.52 0.37 -6.78 16 29 H -0.26 -7.16 6.60 56.52 0.37 -6.79 16 30 H -0.31 -8.40 7.11 56.52 0.40 -8.00 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 33 H 0.09 1.62 5.71 -51.93 -0.30 1.32 16 34 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.16 1.76 7.83 -52.49 -0.41 1.35 16 37 H 0.07 0.92 5.51 -51.93 -0.29 0.64 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.63 4.55 -51.93 -0.24 1.39 16 44 H 0.12 2.80 5.55 -51.93 -0.29 2.51 16 45 H 0.05 0.84 7.66 -51.93 -0.40 0.44 16 46 H 0.10 1.94 5.39 -53.62 -0.29 1.65 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -31.51 366.85 -9.16 -40.67 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.78 Total: 5.83 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.77 Total: -3.67 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.28 Total: -57.96 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.04 Total: -10.09 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -3.91 Total: 19.69 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.51 -9.16 -40.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025215454.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.512 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds