Wall clock time and date at job start Wed Apr 1 2020 03:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38403 * 120.85401 * 2 1 4 4 C 1.38305 * 119.30597 * 180.29766 * 3 2 1 5 5 N 1.31958 * 121.08121 * 359.71525 * 4 3 2 6 6 C 1.31666 * 121.87975 * 0.02562 * 5 4 3 7 7 C 1.39568 * 120.56542 * 0.02562 * 6 5 4 8 8 C 1.47834 * 120.56169 * 179.97438 * 7 6 5 9 9 O 1.21553 * 119.99992 * 234.06826 * 8 7 6 10 10 N 1.34782 * 119.99940 * 54.06730 * 8 7 6 11 11 C 1.46959 * 120.65405 * 7.29200 * 10 8 7 12 12 C 1.53193 * 108.88671 * 126.46410 * 11 10 8 13 13 C 1.53036 * 109.31404 * 54.55760 * 12 11 10 14 14 C 1.53048 * 109.53895 * 298.63377 * 13 12 11 15 15 C 1.46930 * 120.62991 * 187.11035 * 10 8 7 16 16 H 1.08989 * 109.58933 * 113.68094 * 15 10 8 17 17 C 1.52997 * 109.58577 * 353.39484 * 15 10 8 18 18 H 1.09004 * 110.00361 * 313.07884 * 17 15 10 19 19 C 1.54317 * 109.77409 * 74.23403 * 17 15 10 20 20 C 1.55163 * 102.86259 * 141.88454 * 19 17 15 21 21 C 1.54907 * 101.58192 * 324.30327 * 20 19 17 22 22 N 1.47021 * 109.88398 * 191.98227 * 17 15 10 23 23 C 1.36938 * 125.64603 * 61.67717 * 22 17 15 24 24 H 1.07996 * 120.00104 * 226.71105 * 23 22 17 25 25 C 1.38813 * 120.00087 * 46.71910 * 23 22 17 26 26 N 1.31616 * 119.99903 * 178.67883 * 25 23 22 27 27 Si 1.86796 * 119.99770 * 358.67259 * 25 23 22 28 28 H 1.48501 * 109.47276 * 276.39705 * 27 25 23 29 29 H 1.48498 * 109.47259 * 36.39828 * 27 25 23 30 30 H 1.48505 * 109.47057 * 156.39689 * 27 25 23 31 31 H 1.09001 * 109.47061 * 274.66332 * 1 2 3 32 32 H 1.08998 * 109.47053 * 34.67061 * 1 2 3 33 33 H 1.09002 * 109.46433 * 154.67278 * 1 2 3 34 34 H 1.08000 * 120.34832 * 359.97438 * 3 2 1 35 35 H 1.07991 * 119.46054 * 179.69657 * 4 3 2 36 36 H 1.07999 * 119.71892 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.59372 * 6.60699 * 11 10 8 38 38 H 1.08998 * 109.46730 * 246.24325 * 11 10 8 39 39 H 1.09006 * 109.50055 * 294.60421 * 12 11 10 40 40 H 1.08996 * 109.50069 * 174.50747 * 12 11 10 41 41 H 1.09000 * 109.46153 * 178.61541 * 13 12 11 42 42 H 1.09001 * 109.45095 * 58.64623 * 13 12 11 43 43 H 1.09003 * 109.49653 * 301.41434 * 14 13 12 44 44 H 1.09002 * 109.52547 * 181.33245 * 14 13 12 45 45 H 1.09001 * 110.92330 * 23.46914 * 19 17 15 46 46 H 1.08994 * 110.74429 * 260.21466 * 19 17 15 47 47 H 1.09004 * 110.99864 * 206.22905 * 20 19 17 48 48 H 1.08990 * 111.00224 * 82.38254 * 20 19 17 49 49 H 1.09000 * 110.36653 * 278.17155 * 21 20 19 50 50 H 1.08995 * 110.46135 * 155.89875 * 21 20 19 51 51 H 0.97002 * 119.99670 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1882 0.0000 4 6 3.5994 1.1508 -0.0063 5 7 4.2498 0.0027 -0.0066 6 6 3.6198 -1.1535 -0.0016 7 6 2.2250 -1.2017 0.0039 8 6 1.5177 -2.4998 0.0090 9 8 0.6813 -2.7396 -0.8398 10 7 1.8004 -3.4176 0.9547 11 6 2.6885 -3.0869 2.0780 12 6 1.9705 -3.4147 3.3909 13 6 1.5073 -4.8730 3.3641 14 6 0.5218 -5.0759 2.2109 15 6 1.2234 -4.7670 0.8846 16 1 2.0161 -5.4949 0.7124 17 6 0.2095 -4.8324 -0.2593 18 1 -0.4546 -3.9690 -0.2188 19 6 0.9506 -4.8648 -1.6125 20 6 0.0945 -5.8500 -2.4516 21 6 -0.3440 -6.8749 -1.3760 22 7 -0.5753 -6.0718 -0.1616 23 6 -1.3907 -6.4198 0.8821 24 1 -1.3356 -7.4131 1.3024 25 6 -2.2883 -5.4960 1.3996 26 7 -3.0902 -5.8385 2.3854 27 14 -2.3578 -3.7666 0.6969 28 1 -1.3064 -2.9317 1.3315 29 1 -2.1304 -3.8187 -0.7696 30 1 -3.6920 -3.1745 0.9702 31 1 -0.3633 0.0836 1.0243 32 1 -0.3633 0.8452 -0.5846 33 1 -0.3632 -0.9289 -0.4396 34 1 1.6966 2.1346 -0.0004 35 1 4.1557 2.0764 -0.0113 36 1 4.1873 -2.0724 -0.0016 37 1 2.9328 -2.0249 2.0504 38 1 3.6024 -3.6763 2.0043 39 1 1.1062 -2.7605 3.5062 40 1 2.6542 -3.2655 4.2266 41 1 1.0177 -5.1160 4.3072 42 1 2.3694 -5.5251 3.2240 43 1 -0.3289 -4.4061 2.3372 44 1 0.1739 -6.1089 2.2065 45 1 1.9658 -5.2427 -1.4914 46 1 0.9608 -3.8760 -2.0708 47 1 0.6953 -6.3283 -3.2252 48 1 -0.7686 -5.3456 -2.8856 49 1 0.4467 -7.6051 -1.2031 50 1 -1.2627 -7.3766 -1.6798 51 1 -3.7171 -5.1928 2.7473 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025215454.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:17 Heat of formation + Delta-G solvation = 48.635212 kcal Electronic energy + Delta-G solvation = -33391.212336 eV Core-core repulsion = 29484.930589 eV Total energy + Delta-G solvation = -3906.281747 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.33756 -40.89632 -38.88627 -38.27686 -34.99541 -34.76996 -34.03772 -33.04638 -32.06509 -31.47097 -29.15020 -28.82361 -26.54286 -26.15186 -24.97206 -23.94862 -23.20274 -22.43390 -21.62514 -21.44830 -20.49204 -19.18688 -17.95569 -17.66793 -17.55978 -17.23757 -16.91987 -16.50857 -16.07286 -15.54533 -15.50281 -15.42555 -15.11854 -15.01107 -14.88083 -14.33749 -14.23485 -14.14949 -13.95520 -13.85048 -13.75450 -13.61424 -13.56770 -13.13505 -13.00903 -12.82633 -12.77356 -12.36608 -12.21346 -12.11220 -11.93551 -11.83951 -11.51732 -11.36470 -11.16169 -11.06012 -10.75901 -10.59660 -10.55398 -10.20751 -9.99325 -9.43976 -8.47928 -8.15664 -5.69088 -0.21962 0.13869 1.22213 1.27524 1.44305 1.57574 1.96329 2.34434 2.71174 3.07410 3.27649 3.47764 3.53055 3.61427 3.73500 3.85234 3.91301 3.97848 4.03564 4.08365 4.15704 4.24168 4.35231 4.38452 4.41490 4.44300 4.46620 4.50285 4.58750 4.67796 4.71900 4.79580 4.81049 4.82958 4.92332 4.97385 5.03229 5.04331 5.09448 5.15556 5.22253 5.27095 5.34743 5.38677 5.42013 5.58184 5.60702 5.73458 5.82507 5.99564 6.18542 6.42103 6.84657 6.88931 7.18234 7.55121 8.29645 8.96089 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012904 B = 0.005097 C = 0.004943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.376949 B = 5492.532817 C = 5663.155222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.011 4.011 3 C -0.168 4.168 4 C 0.118 3.882 5 N -0.502 5.502 6 C 0.138 3.862 7 C -0.192 4.192 8 C 0.542 3.458 9 O -0.538 6.538 10 N -0.598 5.598 11 C 0.107 3.893 12 C -0.128 4.128 13 C -0.118 4.118 14 C -0.121 4.121 15 C 0.149 3.851 16 H 0.074 0.926 17 C 0.129 3.871 18 H 0.063 0.937 19 C -0.114 4.114 20 C -0.128 4.128 21 C 0.125 3.875 22 N -0.629 5.629 23 C -0.220 4.220 24 H 0.049 0.951 25 C 0.009 3.991 26 N -0.945 5.945 27 Si 0.955 3.045 28 H -0.278 1.278 29 H -0.280 1.280 30 H -0.325 1.325 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.171 0.829 35 H 0.196 0.804 36 H 0.171 0.829 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.039 0.961 40 H 0.105 0.895 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.028 0.972 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.046 0.954 49 H 0.037 0.963 50 H 0.035 0.965 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.166 13.905 -2.589 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.019 4.019 3 C -0.187 4.187 4 C -0.037 4.037 5 N -0.211 5.211 6 C -0.020 4.020 7 C -0.197 4.197 8 C 0.331 3.669 9 O -0.418 6.418 10 N -0.330 5.330 11 C -0.015 4.015 12 C -0.166 4.166 13 C -0.155 4.155 14 C -0.160 4.160 15 C 0.045 3.955 16 H 0.091 0.909 17 C 0.025 3.975 18 H 0.080 0.920 19 C -0.152 4.152 20 C -0.166 4.166 21 C 0.001 3.999 22 N -0.357 5.357 23 C -0.350 4.350 24 H 0.066 0.934 25 C -0.189 4.189 26 N -0.589 5.589 27 Si 0.790 3.210 28 H -0.205 1.205 29 H -0.207 1.207 30 H -0.255 1.255 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.189 0.811 35 H 0.213 0.787 36 H 0.188 0.812 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.058 0.942 40 H 0.124 0.876 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.047 0.953 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.065 0.935 49 H 0.055 0.945 50 H 0.054 0.946 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 17.473 13.784 -2.851 22.438 hybrid contribution -1.970 0.371 0.112 2.008 sum 15.503 14.155 -2.738 21.171 Atomic orbital electron populations 1.21062 0.90804 1.04343 1.03169 1.20505 0.96711 0.92454 0.92246 1.22310 0.95784 0.98571 1.02074 1.23529 0.91858 0.97056 0.91279 1.67793 1.40956 0.98678 1.13715 1.23043 0.89218 0.97370 0.92324 1.20864 0.96293 0.93503 1.09076 1.18565 0.83003 0.83954 0.81356 1.90744 1.33657 1.77705 1.39659 1.48270 1.47835 1.12199 1.24691 1.22028 0.92860 1.02137 0.84476 1.21895 1.00402 0.96231 0.98111 1.21581 0.99048 0.96985 0.97923 1.22158 0.96937 1.03069 0.93797 1.21780 0.95141 0.81659 0.96918 0.90854 1.22140 0.92376 0.89626 0.93334 0.92048 1.22988 0.97327 1.00012 0.94848 1.22739 0.99333 0.97201 0.97376 1.21850 0.97892 0.93798 0.86374 1.45037 1.50978 1.21512 1.18210 1.18063 1.10606 0.98487 1.07828 0.93386 1.25874 0.94603 1.00821 0.97556 1.69850 1.24478 1.35688 1.28887 0.85965 0.73433 0.82771 0.78876 1.20517 1.20662 1.25498 0.90668 0.87988 0.92720 0.81128 0.78703 0.81195 0.89133 0.88341 0.94245 0.87624 0.92613 0.90330 0.95290 0.90193 0.91590 0.88859 0.88700 0.93479 0.94500 0.94609 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 9.75 71.24 0.69 -2.98 16 2 C -0.01 -0.26 5.95 -19.40 -0.12 -0.38 16 3 C -0.17 -2.79 9.82 22.33 0.22 -2.57 16 4 C 0.12 1.84 11.17 84.69 0.95 2.78 16 5 N -0.50 -10.24 10.35 -194.76 -2.01 -12.25 16 6 C 0.14 3.05 9.06 85.04 0.77 3.82 16 7 C -0.19 -5.17 4.57 -19.99 -0.09 -5.26 16 8 C 0.54 18.39 6.20 86.78 0.54 18.93 16 9 O -0.54 -21.93 7.87 -3.88 -0.03 -21.96 16 10 N -0.60 -19.39 2.98 -798.34 -2.38 -21.77 16 11 C 0.11 2.54 5.61 86.36 0.48 3.02 16 12 C -0.13 -3.32 6.08 30.67 0.19 -3.13 16 13 C -0.12 -3.73 5.88 30.62 0.18 -3.55 16 14 C -0.12 -5.17 3.73 30.67 0.11 -5.06 16 15 C 0.15 5.77 2.65 44.97 0.12 5.89 16 16 H 0.07 2.66 7.84 -2.39 -0.02 2.64 16 17 C 0.13 5.76 1.23 45.34 0.06 5.82 16 18 H 0.06 3.09 1.02 -4.04 0.00 3.08 16 19 C -0.11 -4.34 5.31 31.78 0.17 -4.17 16 20 C -0.13 -4.68 7.08 31.99 0.23 -4.45 16 21 C 0.13 5.27 7.23 86.85 0.63 5.90 16 22 N -0.63 -31.17 2.62 -668.28 -1.75 -32.92 16 23 C -0.22 -12.57 7.13 84.03 0.60 -11.97 16 24 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 25 C 0.01 0.53 4.31 84.86 0.37 0.89 16 26 N -0.94 -59.19 13.97 21.65 0.30 -58.89 16 27 Si 0.96 52.28 22.98 68.60 1.58 53.86 16 28 H -0.28 -14.81 6.54 99.48 0.65 -14.16 16 29 H -0.28 -15.85 6.60 99.48 0.66 -15.19 16 30 H -0.32 -18.06 7.11 99.48 0.71 -17.35 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.10 2.08 8.13 -2.39 -0.02 2.06 16 33 H 0.05 1.93 5.71 -2.39 -0.01 1.91 16 34 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 35 H 0.20 1.48 8.06 -2.92 -0.02 1.46 16 36 H 0.17 3.20 7.83 -2.91 -0.02 3.18 16 37 H 0.09 1.92 5.51 -2.39 -0.01 1.91 16 38 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.03 1.44 4.55 -2.39 -0.01 1.43 16 44 H 0.08 3.97 5.55 -2.39 -0.01 3.96 16 45 H 0.07 2.22 7.66 -2.39 -0.02 2.20 16 46 H 0.09 3.70 5.39 -35.29 -0.19 3.51 16 47 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 48 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -74.32 366.85 2.45 -71.87 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.65 Total: 18.54 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 6.09 Total: 3.52 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -5.84 Total: -125.83 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.03 Total: -21.96 kcal Atomic # 14 Polarization: 52.28 SS G_CDS: 1.58 Total: 53.86 kcal Total: -74.32 2.45 -71.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025215454.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.505 kcal (2) G-P(sol) polarization free energy of solvation -74.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds