Wall clock time and date at job start Wed Apr 1 2020 02:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38626 * 120.46758 * 2 1 4 4 C 1.38590 * 118.48892 * 180.26741 * 3 2 1 5 5 C 1.38608 * 119.34643 * 359.74745 * 4 3 2 6 6 N 1.31494 * 120.90396 * 359.97438 * 5 4 3 7 7 C 1.32754 * 121.63994 * 0.02562 * 6 5 4 8 8 C 1.48171 * 119.72094 * 179.97438 * 7 6 5 9 9 O 1.21511 * 119.99575 * 105.67724 * 8 7 6 10 10 N 1.34778 * 120.00194 * 285.68115 * 8 7 6 11 11 C 1.46924 * 120.62862 * 5.56705 * 10 8 7 12 12 C 1.53191 * 108.77649 * 126.37355 * 11 10 8 13 13 C 1.53039 * 109.31076 * 54.63130 * 12 11 10 14 14 C 1.53041 * 109.53937 * 298.63520 * 13 12 11 15 15 C 1.46920 * 120.62811 * 185.54788 * 10 8 7 16 16 H 1.09003 * 109.58917 * 113.70252 * 15 10 8 17 17 C 1.52998 * 109.59226 * 353.41306 * 15 10 8 18 18 H 1.09007 * 109.99675 * 43.11196 * 17 15 10 19 19 C 1.54312 * 109.88672 * 164.20742 * 17 15 10 20 20 C 1.55157 * 102.94508 * 141.61228 * 19 17 15 21 21 C 1.54911 * 101.57852 * 324.49807 * 20 19 17 22 22 N 1.47182 * 109.79525 * 281.99397 * 17 15 10 23 23 C 1.36943 * 125.73455 * 61.64172 * 22 17 15 24 24 H 1.08001 * 119.99923 * 1.64177 * 23 22 17 25 25 C 1.38808 * 119.99875 * 181.64627 * 23 22 17 26 26 N 1.31620 * 120.00191 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 120.00171 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46945 * 89.99701 * 27 25 23 29 29 H 1.48498 * 109.47574 * 209.99913 * 27 25 23 30 30 H 1.48502 * 109.46904 * 330.00160 * 27 25 23 31 31 H 1.08999 * 109.46816 * 274.94226 * 1 2 3 32 32 H 1.09002 * 109.47091 * 34.94218 * 1 2 3 33 33 H 1.09002 * 109.46917 * 154.94368 * 1 2 3 34 34 H 1.08001 * 120.76113 * 0.02562 * 3 2 1 35 35 H 1.07993 * 120.32689 * 179.77038 * 4 3 2 36 36 H 1.07997 * 119.54759 * 179.97438 * 5 4 3 37 37 H 1.09007 * 109.58635 * 246.15874 * 11 10 8 38 38 H 1.09002 * 109.59126 * 6.43772 * 11 10 8 39 39 H 1.08999 * 109.49734 * 174.58264 * 12 11 10 40 40 H 1.08997 * 109.49603 * 294.64909 * 12 11 10 41 41 H 1.09005 * 109.46155 * 58.65715 * 13 12 11 42 42 H 1.09000 * 109.45864 * 178.62857 * 13 12 11 43 43 H 1.09000 * 109.49619 * 301.41577 * 14 13 12 44 44 H 1.09001 * 109.49672 * 181.31571 * 14 13 12 45 45 H 1.09011 * 110.71902 * 23.24865 * 19 17 15 46 46 H 1.09001 * 110.72747 * 259.97871 * 19 17 15 47 47 H 1.09002 * 111.00692 * 206.42720 * 20 19 17 48 48 H 1.08999 * 111.00256 * 82.57242 * 20 19 17 49 49 H 1.09006 * 110.36417 * 155.84545 * 21 20 19 50 50 H 1.08995 * 110.36732 * 278.05790 * 21 20 19 51 51 H 0.97007 * 120.00309 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2100 1.1948 0.0000 4 6 3.5951 1.1470 -0.0057 5 6 4.2322 -0.0839 -0.0058 6 7 3.5408 -1.2024 -0.0002 7 6 2.2132 -1.2003 0.0054 8 6 1.4767 -2.4860 0.0111 9 8 0.9322 -2.8697 1.0274 10 7 1.4107 -3.2298 -1.1109 11 6 2.1633 -2.8419 -2.3116 12 6 3.0166 -4.0309 -2.7643 13 6 2.1183 -5.2553 -2.9538 14 6 1.4560 -5.6154 -1.6219 15 6 0.5851 -4.4443 -1.1563 16 1 -0.2397 -4.2996 -1.8541 17 6 0.0308 -4.7403 0.2387 18 1 -0.3191 -3.8188 0.7041 19 6 -1.1306 -5.7514 0.1384 20 6 -0.9171 -6.6508 1.3845 21 6 0.6289 -6.7036 1.4685 22 7 1.0770 -5.3569 1.0702 23 6 2.2674 -4.7763 1.4186 24 1 2.4913 -3.7695 1.0983 25 6 3.1862 -5.4820 2.1833 26 7 2.9131 -6.7088 2.5739 27 14 4.8103 -4.6904 2.6579 28 1 4.6544 -3.9782 3.9516 29 1 5.8519 -5.7401 2.7931 30 1 5.2156 -3.7234 1.6063 31 1 -0.3633 0.0885 1.0239 32 1 -0.3633 0.8424 -0.5886 33 1 -0.3633 -0.9310 -0.4352 34 1 1.6902 2.1415 0.0004 35 1 4.1722 2.0598 -0.0096 36 1 5.3114 -0.1250 -0.0107 37 1 1.4687 -2.5673 -3.1055 38 1 2.8079 -1.9937 -2.0807 39 1 3.5060 -3.7892 -3.7078 40 1 3.7711 -4.2462 -2.0077 41 1 1.3491 -5.0306 -3.6928 42 1 2.7192 -6.0965 -3.2995 43 1 2.2249 -5.8161 -0.8759 44 1 0.8347 -6.5014 -1.7524 45 1 -1.0540 -6.3371 -0.7778 46 1 -2.0922 -5.2408 0.1915 47 1 -1.3338 -7.6453 1.2246 48 1 -1.3414 -6.1898 2.2764 49 1 0.9460 -6.9229 2.4881 50 1 1.0208 -7.4528 0.7807 51 1 3.5550 -7.2018 3.1086 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025222736.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:10 Heat of formation + Delta-G solvation = 86.493409 kcal Electronic energy + Delta-G solvation = -33514.805670 eV Core-core repulsion = 29610.165577 eV Total energy + Delta-G solvation = -3904.640093 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.88645 -39.53119 -36.97947 -36.49960 -33.60366 -32.57830 -32.33416 -31.76145 -30.76096 -28.86485 -27.55338 -27.04113 -25.08749 -24.18875 -23.79096 -22.51284 -22.08709 -20.63080 -20.00487 -19.44658 -18.70497 -17.17240 -16.84010 -16.31207 -15.86142 -15.46255 -15.14122 -14.55147 -14.33712 -14.18993 -13.93107 -13.80068 -13.62535 -13.33374 -13.11540 -13.00776 -12.86812 -12.66786 -12.50633 -12.38101 -11.92602 -11.73093 -11.66186 -11.62197 -11.05092 -10.93857 -10.80292 -10.61319 -10.50295 -10.40863 -10.09198 -9.96786 -9.81981 -9.76381 -9.66612 -9.47936 -9.40211 -8.90692 -8.81069 -8.34163 -8.14272 -7.74392 -6.39907 -5.32328 -2.65864 0.98513 1.27463 3.04139 3.47191 3.59976 3.64579 3.71314 3.78443 4.47477 4.68494 4.75954 4.80229 4.93577 5.01507 5.13862 5.28957 5.31760 5.37956 5.52720 5.57322 5.58364 5.61956 5.69025 5.72762 5.75661 5.84854 5.88648 5.95819 5.99754 6.05292 6.08555 6.13376 6.17301 6.19169 6.29507 6.39064 6.47522 6.52769 6.61273 6.64396 6.67694 6.75872 6.85988 6.94350 7.12349 7.43568 7.58657 7.78251 7.96626 8.01524 8.06457 8.18578 8.66626 8.83028 9.59118 10.20808 10.85577 11.74147 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010058 B = 0.006030 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.296162 B = 4642.176751 C = 5460.390409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.081 4.081 4 C -0.166 4.166 5 C 0.093 3.907 6 N -0.446 5.446 7 C 0.106 3.894 8 C 0.564 3.436 9 O -0.458 6.458 10 N -0.586 5.586 11 C 0.115 3.885 12 C -0.130 4.130 13 C -0.116 4.116 14 C -0.126 4.126 15 C 0.142 3.858 16 H 0.054 0.946 17 C 0.133 3.867 18 H 0.098 0.902 19 C -0.132 4.132 20 C -0.145 4.145 21 C 0.156 3.844 22 N -0.575 5.575 23 C -0.179 4.179 24 H 0.096 0.904 25 C -0.028 4.028 26 N -0.934 5.934 27 Si 0.892 3.108 28 H -0.297 1.297 29 H -0.298 1.298 30 H -0.275 1.275 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.098 0.902 50 H 0.008 0.992 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.302 13.238 -12.096 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.110 4.110 3 C -0.107 4.107 4 C -0.186 4.186 5 C -0.066 4.066 6 N -0.156 5.156 7 C -0.034 4.034 8 C 0.349 3.651 9 O -0.331 6.331 10 N -0.320 5.320 11 C -0.008 4.008 12 C -0.168 4.168 13 C -0.154 4.154 14 C -0.164 4.164 15 C 0.037 3.963 16 H 0.072 0.928 17 C 0.025 3.975 18 H 0.115 0.885 19 C -0.171 4.171 20 C -0.184 4.184 21 C 0.031 3.969 22 N -0.297 5.297 23 C -0.308 4.308 24 H 0.114 0.886 25 C -0.221 4.221 26 N -0.586 5.586 27 Si 0.725 3.275 28 H -0.226 1.226 29 H -0.225 1.225 30 H -0.201 1.201 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.174 0.826 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.123 0.877 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.116 0.884 50 H 0.026 0.974 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.968 12.160 -11.414 17.143 hybrid contribution 0.843 1.165 0.197 1.452 sum -3.124 13.325 -11.217 17.696 Atomic orbital electron populations 1.20759 0.89844 1.03022 1.03187 1.20814 0.97683 0.92770 0.99735 1.21382 0.94132 0.97717 0.97439 1.22237 0.95205 0.99573 1.01579 1.22843 1.00463 0.87446 0.95875 1.67828 1.06851 1.31217 1.09688 1.21482 0.90245 0.94221 0.97474 1.17632 0.81417 0.82228 0.83785 1.90926 1.43080 1.67838 1.31227 1.47738 1.47038 1.25617 1.11571 1.21569 0.94415 0.97713 0.87134 1.21836 0.98687 0.95273 1.01046 1.21522 0.98395 0.97298 0.98178 1.21937 1.01105 0.96647 0.96754 1.22110 0.90888 0.82862 1.00406 0.92834 1.22217 0.89262 0.97536 0.88446 0.88533 1.22685 0.97786 0.98217 0.98373 1.22982 1.01212 0.97468 0.96719 1.21814 0.86450 0.86464 1.02208 1.44384 1.16225 1.13048 1.56041 1.19744 0.89827 0.97573 1.23618 0.88645 1.24722 0.98472 0.96492 1.02434 1.69850 1.34904 1.10426 1.43439 0.86309 0.84537 0.78050 0.78632 1.22569 1.22465 1.20063 0.90188 0.91208 0.91106 0.84640 0.84744 0.82563 0.92549 0.90661 0.91971 0.90662 0.93176 0.92468 0.87686 0.92319 0.92669 0.92895 0.93121 0.92635 0.88450 0.97376 0.94651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.32 9.71 36.01 0.35 -0.97 16 2 C -0.11 -1.51 5.93 -104.09 -0.62 -2.12 16 3 C -0.08 -0.90 9.87 -39.31 -0.39 -1.29 16 4 C -0.17 -1.80 10.12 -39.32 -0.40 -2.20 16 5 C 0.09 1.27 11.18 -17.56 -0.20 1.08 16 6 N -0.45 -8.05 9.42 -9.80 -0.09 -8.14 16 7 C 0.11 1.87 4.93 -83.01 -0.41 1.46 16 8 C 0.56 11.27 3.33 -12.18 -0.04 11.23 16 9 O -0.46 -10.80 9.87 5.36 0.05 -10.74 16 10 N -0.59 -10.59 2.85 -166.21 -0.47 -11.06 16 11 C 0.12 1.73 6.32 -3.71 -0.02 1.71 16 12 C -0.13 -1.95 6.08 -26.61 -0.16 -2.12 16 13 C -0.12 -1.76 5.88 -26.69 -0.16 -1.91 16 14 C -0.13 -2.36 4.92 -26.61 -0.13 -2.49 16 15 C 0.14 2.61 2.50 -67.60 -0.17 2.44 16 16 H 0.05 0.87 8.06 -51.93 -0.42 0.45 16 17 C 0.13 2.81 2.32 -66.87 -0.16 2.66 16 18 H 0.10 2.23 5.03 -56.29 -0.28 1.95 16 19 C -0.13 -2.43 6.32 -24.90 -0.16 -2.59 16 20 C -0.15 -2.95 7.09 -24.58 -0.17 -3.13 16 21 C 0.16 3.92 5.81 -2.53 -0.01 3.91 16 22 N -0.57 -14.65 1.90 -162.46 -0.31 -14.95 16 23 C -0.18 -5.08 7.24 -15.06 -0.11 -5.19 16 24 H 0.10 2.71 3.80 -52.32 -0.20 2.51 16 25 C -0.03 -0.85 5.49 -17.43 -0.10 -0.95 16 26 N -0.93 -28.76 10.12 55.49 0.56 -28.20 16 27 Si 0.89 24.26 29.55 -169.99 -5.02 19.24 16 28 H -0.30 -8.25 7.11 56.52 0.40 -7.85 16 29 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 30 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 33 H 0.07 0.94 6.92 -51.93 -0.36 0.58 16 34 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.14 5.74 -51.93 -0.30 0.85 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 2.51 6.19 -51.93 -0.32 2.19 16 44 H 0.06 1.07 7.27 -51.93 -0.38 0.69 16 45 H 0.05 0.94 6.94 -51.92 -0.36 0.58 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.10 2.82 5.99 -51.93 -0.31 2.51 16 50 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 51 H 0.24 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -34.22 378.04 -10.62 -44.84 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.98 Total: 3.80 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.05 Total: -0.47 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.31 Total: -62.36 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.05 Total: -10.74 kcal Atomic # 14 Polarization: 24.26 SS G_CDS: -5.02 Total: 19.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.22 -10.62 -44.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025222736.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.331 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds