Wall clock time and date at job start Wed Apr 1 2020 02:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38628 * 120.46492 * 2 1 4 4 C 1.38581 * 118.48894 * 180.02562 * 3 2 1 5 5 C 1.38605 * 119.35154 * 359.97438 * 4 3 2 6 6 N 1.31495 * 120.89867 * 0.02562 * 5 4 3 7 7 C 1.32752 * 121.64480 * 359.70036 * 6 5 4 8 8 C 1.48168 * 119.72546 * 180.28921 * 7 6 5 9 9 O 1.21514 * 119.99614 * 255.82423 * 8 7 6 10 10 N 1.34774 * 119.99668 * 75.82397 * 8 7 6 11 11 C 1.46923 * 120.63420 * 6.23148 * 10 8 7 12 12 C 1.53190 * 108.77606 * 233.58362 * 11 10 8 13 13 C 1.53045 * 109.31431 * 305.36540 * 12 11 10 14 14 C 1.53039 * 109.53666 * 61.36266 * 13 12 11 15 15 C 1.46923 * 120.62609 * 185.94758 * 10 8 7 16 16 H 1.09005 * 109.58904 * 246.20382 * 15 10 8 17 17 C 1.53000 * 109.59155 * 6.62821 * 15 10 8 18 18 H 1.08994 * 109.87262 * 309.32001 * 17 15 10 19 19 C 1.54317 * 109.88458 * 188.13617 * 17 15 10 20 20 C 1.55159 * 102.94264 * 218.38970 * 19 17 15 21 21 C 1.54914 * 101.57986 * 35.50378 * 20 19 17 22 22 N 1.47025 * 109.87877 * 70.32806 * 17 15 10 23 23 C 1.36933 * 125.65287 * 298.39836 * 22 17 15 24 24 H 1.08001 * 120.00032 * 47.16862 * 23 22 17 25 25 C 1.38808 * 120.00361 * 227.17416 * 23 22 17 26 26 N 1.31620 * 120.00534 * 205.08604 * 25 23 22 27 27 Si 1.86810 * 120.00001 * 25.08121 * 25 23 22 28 28 H 1.48502 * 109.46817 * 95.33459 * 27 25 23 29 29 H 1.48490 * 109.47085 * 215.33750 * 27 25 23 30 30 H 1.48506 * 109.46815 * 335.33886 * 27 25 23 31 31 H 1.09002 * 109.46763 * 85.91729 * 1 2 3 32 32 H 1.09000 * 109.47693 * 325.91092 * 1 2 3 33 33 H 1.09006 * 109.47140 * 205.91261 * 1 2 3 34 34 H 1.08005 * 120.75693 * 359.97438 * 3 2 1 35 35 H 1.07998 * 120.32870 * 179.97438 * 4 3 2 36 36 H 1.07999 * 119.55656 * 179.97438 * 5 4 3 37 37 H 1.08999 * 109.58663 * 353.37328 * 11 10 8 38 38 H 1.09004 * 109.59046 * 113.79534 * 11 10 8 39 39 H 1.08997 * 109.49612 * 65.31453 * 12 11 10 40 40 H 1.09000 * 109.49735 * 185.41197 * 12 11 10 41 41 H 1.08997 * 109.45756 * 181.38644 * 13 12 11 42 42 H 1.09001 * 109.45263 * 301.34534 * 13 12 11 43 43 H 1.09001 * 109.49630 * 58.59125 * 14 13 12 44 44 H 1.08995 * 109.49484 * 178.65439 * 14 13 12 45 45 H 1.08996 * 110.72496 * 336.75412 * 19 17 15 46 46 H 1.09003 * 110.71926 * 100.02910 * 19 17 15 47 47 H 1.09002 * 111.00865 * 277.42936 * 20 19 17 48 48 H 1.09000 * 111.00249 * 153.57868 * 20 19 17 49 49 H 1.08998 * 110.36373 * 204.14855 * 21 20 19 50 50 H 1.08997 * 110.36244 * 81.83226 * 21 20 19 51 51 H 0.96996 * 120.00239 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1949 0.0000 4 6 3.5949 1.1471 -0.0005 5 6 4.2322 -0.0837 -0.0005 6 7 3.5407 -1.2022 -0.0005 7 6 2.2132 -1.2003 0.0054 8 6 1.4767 -2.4860 0.0117 9 8 0.9466 -2.8874 -1.0054 10 7 1.3949 -3.2101 1.1454 11 6 1.9114 -2.6768 2.4133 12 6 2.8878 -3.6928 3.0142 13 6 2.1921 -5.0502 3.1402 14 6 1.7760 -5.5427 1.7522 15 6 0.7819 -4.5453 1.1381 16 1 -0.1352 -4.5297 1.7271 17 6 0.4635 -4.9558 -0.3010 18 1 -0.0924 -4.1612 -0.7986 19 6 -0.3615 -6.2599 -0.3046 20 6 0.2127 -7.0312 -1.5223 21 6 1.7094 -6.6359 -1.4630 22 7 1.7106 -5.2263 -1.0313 23 6 2.7084 -4.3194 -1.2701 24 1 3.0753 -3.6964 -0.4678 25 6 3.2484 -4.2008 -2.5434 26 7 4.4719 -3.7412 -2.6993 27 14 2.2387 -4.6936 -4.0358 28 1 1.5708 -3.4932 -4.5999 29 1 3.1306 -5.2917 -5.0613 30 1 1.2118 -5.6877 -3.6323 31 1 -0.3633 0.0732 -1.0251 32 1 -0.3634 0.8510 0.5760 33 1 -0.3634 -0.9244 0.4491 34 1 1.6899 2.1415 -0.0004 35 1 4.1720 2.0599 -0.0010 36 1 5.3114 -0.1248 -0.0014 37 1 2.4301 -1.7359 2.2296 38 1 1.0846 -2.5118 3.1042 39 1 3.7581 -3.7889 2.3650 40 1 3.2047 -3.3535 4.0004 41 1 2.8770 -5.7687 3.5903 42 1 1.3080 -4.9479 3.7694 43 1 2.6568 -5.6214 1.1150 44 1 1.3021 -6.5203 1.8402 45 1 -0.2018 -6.8199 0.6168 46 1 -1.4206 -6.0458 -0.4483 47 1 -0.2447 -6.6911 -2.4514 48 1 0.0875 -8.1068 -1.3979 49 1 2.1662 -6.7314 -2.4480 50 1 2.2369 -7.2553 -0.7377 51 1 4.8490 -3.6580 -3.5890 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025222739.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:21 Heat of formation + Delta-G solvation = 56.344831 kcal Electronic energy + Delta-G solvation = -33813.290733 eV Core-core repulsion = 29907.343300 eV Total energy + Delta-G solvation = -3905.947433 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.04799 -40.66734 -38.48470 -37.94406 -34.54328 -34.33168 -33.72229 -32.95305 -32.13088 -31.49596 -28.88639 -28.32523 -26.47908 -25.76666 -24.97266 -23.85078 -23.09640 -22.02961 -21.84846 -21.00902 -19.99330 -18.87199 -18.12976 -17.58115 -17.38327 -16.81871 -16.43294 -16.19269 -15.69352 -15.47290 -15.27156 -15.03419 -14.89754 -14.72812 -14.46850 -14.38837 -14.33445 -13.92185 -13.81069 -13.66439 -13.58256 -13.36687 -13.27549 -12.99588 -12.76978 -12.56407 -12.51847 -12.32111 -12.14326 -11.94124 -11.76629 -11.61114 -11.52550 -11.45718 -11.23844 -11.16782 -10.64275 -10.33912 -10.30463 -9.85974 -9.45937 -9.20623 -8.07711 -7.90288 -5.26246 0.07743 0.44988 1.30399 1.38726 1.50208 1.85667 2.36627 2.63245 2.86412 3.35853 3.53245 3.67865 3.78322 3.94210 3.95072 4.05986 4.08827 4.14197 4.18876 4.20393 4.24790 4.29948 4.38587 4.50245 4.52282 4.58230 4.66280 4.69159 4.70492 4.75774 4.80566 4.89105 4.97060 5.00299 5.09667 5.11174 5.12795 5.15541 5.22397 5.23997 5.27579 5.30581 5.32916 5.38669 5.50051 5.67705 5.81132 5.81712 6.05505 6.23445 6.61382 6.73901 7.17187 7.24736 7.65382 7.86091 8.57973 9.24532 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010280 B = 0.006699 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.113382 B = 4178.542782 C = 5400.129157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.127 4.127 3 C -0.078 4.078 4 C -0.152 4.152 5 C 0.071 3.929 6 N -0.470 5.470 7 C 0.078 3.922 8 C 0.584 3.416 9 O -0.512 6.512 10 N -0.601 5.601 11 C 0.118 3.882 12 C -0.126 4.126 13 C -0.108 4.108 14 C -0.117 4.117 15 C 0.146 3.854 16 H 0.088 0.912 17 C 0.120 3.880 18 H 0.072 0.928 19 C -0.118 4.118 20 C -0.125 4.125 21 C 0.121 3.879 22 N -0.600 5.600 23 C -0.163 4.163 24 H 0.077 0.923 25 C -0.016 4.016 26 N -0.941 5.941 27 Si 0.897 3.103 28 H -0.325 1.325 29 H -0.319 1.319 30 H -0.234 1.234 31 H 0.067 0.933 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.176 0.824 35 H 0.174 0.826 36 H 0.161 0.839 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.029 0.971 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.040 0.960 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.045 0.955 48 H 0.092 0.908 49 H 0.011 0.989 50 H 0.027 0.973 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.630 6.293 15.878 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.130 4.130 3 C -0.104 4.104 4 C -0.172 4.172 5 C -0.088 4.088 6 N -0.180 5.180 7 C -0.061 4.061 8 C 0.372 3.628 9 O -0.387 6.387 10 N -0.335 5.335 11 C -0.005 4.005 12 C -0.165 4.165 13 C -0.145 4.145 14 C -0.155 4.155 15 C 0.042 3.958 16 H 0.106 0.894 17 C 0.015 3.985 18 H 0.089 0.911 19 C -0.157 4.157 20 C -0.163 4.163 21 C -0.004 4.004 22 N -0.326 5.326 23 C -0.293 4.293 24 H 0.094 0.906 25 C -0.210 4.210 26 N -0.588 5.588 27 Si 0.730 3.270 28 H -0.255 1.255 29 H -0.248 1.248 30 H -0.158 1.158 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.072 0.928 34 H 0.194 0.806 35 H 0.192 0.808 36 H 0.178 0.822 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.048 0.952 40 H 0.111 0.889 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.098 0.902 47 H 0.064 0.936 48 H 0.111 0.889 49 H 0.029 0.971 50 H 0.045 0.955 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.331 5.320 15.214 18.624 hybrid contribution 0.309 0.605 -2.029 2.140 sum -9.022 5.925 13.185 17.040 Atomic orbital electron populations 1.20719 0.88699 1.03609 1.02848 1.21166 0.98682 0.92964 1.00156 1.21809 0.94207 0.98167 0.96205 1.22609 0.95632 0.99647 0.99282 1.23178 1.01037 0.88083 0.96478 1.67694 1.07496 1.33014 1.09810 1.21338 0.90511 0.94446 0.99818 1.17725 0.79446 0.82608 0.83063 1.90717 1.46443 1.67730 1.33797 1.47832 1.60474 1.17233 1.07925 1.21667 0.97479 0.96535 0.84808 1.21811 0.97645 0.96232 1.00786 1.21470 1.00822 0.95891 0.96332 1.21856 0.99343 0.98152 0.96163 1.21928 0.94871 0.80746 0.98247 0.89450 1.22140 0.88951 0.96671 0.90768 0.91132 1.22675 0.99040 0.95653 0.98293 1.22686 0.94890 1.00499 0.98233 1.21920 0.95756 0.86740 0.95971 1.44685 1.17658 1.05113 1.65120 1.18522 1.05387 1.13178 0.92246 0.90570 1.26034 0.96617 0.99271 0.99077 1.70046 1.14635 1.53189 1.20937 0.86458 0.81168 0.77099 0.82274 1.25543 1.24819 1.15755 0.91468 0.87520 0.92767 0.80623 0.80849 0.82169 0.92151 0.89089 0.95172 0.88909 0.91570 0.89762 0.94085 0.90386 0.89462 0.90164 0.93595 0.88941 0.97088 0.95487 0.94791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 9.70 71.24 0.69 -1.95 16 2 C -0.13 -4.03 5.93 -19.52 -0.12 -4.15 16 3 C -0.08 -1.91 9.87 22.45 0.22 -1.69 16 4 C -0.15 -3.80 10.11 22.44 0.23 -3.57 16 5 C 0.07 2.44 11.18 84.83 0.95 3.39 16 6 N -0.47 -20.65 9.59 -184.91 -1.77 -22.42 16 7 C 0.08 3.21 4.56 41.89 0.19 3.40 16 8 C 0.58 25.56 2.61 86.88 0.23 25.79 16 9 O -0.51 -26.42 10.47 -3.76 -0.04 -26.46 16 10 N -0.60 -21.86 2.57 -797.24 -2.05 -23.91 16 11 C 0.12 3.40 6.35 86.36 0.55 3.95 16 12 C -0.13 -3.50 6.08 30.67 0.19 -3.32 16 13 C -0.11 -2.67 5.88 30.62 0.18 -2.49 16 14 C -0.12 -3.71 4.97 30.82 0.15 -3.56 16 15 C 0.15 4.90 2.60 45.12 0.12 5.02 16 16 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 17 C 0.12 4.80 2.33 45.34 0.11 4.90 16 18 H 0.07 3.32 5.30 -53.99 -0.29 3.03 16 19 C -0.12 -3.65 6.33 31.78 0.20 -3.45 16 20 C -0.12 -4.36 6.93 31.99 0.22 -4.14 16 21 C 0.12 5.39 5.99 86.86 0.52 5.91 16 22 N -0.60 -29.33 1.18 -668.28 -0.79 -30.11 16 23 C -0.16 -9.51 6.04 84.03 0.51 -9.00 16 24 H 0.08 4.70 5.06 -2.91 -0.01 4.68 16 25 C -0.02 -1.00 5.39 84.86 0.46 -0.54 16 26 N -0.94 -63.35 13.97 21.65 0.30 -63.05 16 27 Si 0.90 52.30 26.69 68.60 1.83 54.13 16 28 H -0.33 -20.08 7.11 99.48 0.71 -19.37 16 29 H -0.32 -18.84 7.11 99.48 0.71 -18.13 16 30 H -0.23 -12.55 4.59 99.48 0.46 -12.09 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.11 1.84 8.12 -2.39 -0.02 1.82 16 33 H 0.05 1.54 6.93 -2.38 -0.02 1.52 16 34 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 36 H 0.16 4.95 8.06 -2.91 -0.02 4.92 16 37 H 0.06 1.90 6.16 -2.39 -0.01 1.88 16 38 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.04 1.75 6.82 -2.39 -0.02 1.73 16 44 H 0.08 2.15 6.79 -2.39 -0.02 2.13 16 45 H 0.09 2.24 6.44 -2.39 -0.02 2.22 16 46 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.05 1.75 7.32 -2.39 -0.02 1.73 16 48 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 49 H 0.01 0.54 5.12 -2.39 -0.01 0.53 16 50 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.24 16.07 8.31 -92.71 -0.77 15.30 16 Total: -1.00 -85.33 374.09 3.48 -81.85 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.41 Total: 15.44 kcal Atomic # 6 Polarization: 8.94 SS G_CDS: 5.59 Total: 14.53 kcal Atomic # 7 Polarization: -135.18 SS G_CDS: -4.30 Total: -139.49 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.04 Total: -26.46 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 1.83 Total: 54.13 kcal Total: -85.33 3.48 -81.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025222739.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.196 kcal (2) G-P(sol) polarization free energy of solvation -85.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds