Wall clock time and date at job start Wed Apr 1 2020 02:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31691 * 119.71871 * 2 1 4 4 C 1.31919 * 121.88375 * 180.02562 * 3 2 1 5 5 C 1.38356 * 121.07747 * 0.02562 * 4 3 2 6 6 C 1.38352 * 119.30390 * 359.71936 * 5 4 3 7 7 C 1.39520 * 119.71574 * 180.02562 * 2 1 3 8 8 C 1.47843 * 120.55953 * 359.97438 * 7 2 1 9 9 O 1.21553 * 120.00089 * 306.68212 * 8 7 2 10 10 N 1.34779 * 120.00015 * 126.68352 * 8 7 2 11 11 C 1.46928 * 120.63021 * 0.46487 * 10 8 7 12 12 C 1.53192 * 108.77551 * 126.37030 * 11 10 8 13 13 C 1.53110 * 109.32909 * 54.63299 * 12 11 10 14 14 C 1.53040 * 109.50389 * 298.65874 * 13 12 11 15 15 C 1.46927 * 120.63133 * 180.44241 * 10 8 7 16 16 H 1.08995 * 109.70035 * 113.77027 * 15 10 8 17 17 C 1.53003 * 109.58405 * 353.41790 * 15 10 8 18 18 H 1.09001 * 109.87248 * 54.09040 * 17 15 10 19 19 C 1.54322 * 109.88212 * 293.07165 * 17 15 10 20 20 C 1.55398 * 102.82706 * 218.48074 * 19 17 15 21 21 C 1.54907 * 101.66649 * 35.34385 * 20 19 17 22 22 N 1.47023 * 109.88036 * 175.10409 * 17 15 10 23 23 C 1.36938 * 125.65108 * 298.32474 * 22 17 15 24 24 H 1.07994 * 119.99584 * 356.22846 * 23 22 17 25 25 C 1.38809 * 119.99863 * 176.23015 * 23 22 17 26 26 N 1.31617 * 120.00127 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 119.99784 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46958 * 89.99874 * 27 25 23 29 29 H 1.48496 * 109.46867 * 209.99820 * 27 25 23 30 30 H 1.48497 * 109.47058 * 329.99521 * 27 25 23 31 31 H 1.09002 * 109.47305 * 273.93825 * 1 2 3 32 32 H 1.09003 * 109.47092 * 33.93964 * 1 2 3 33 33 H 1.08998 * 109.47032 * 153.93759 * 1 2 3 34 34 H 1.08001 * 119.46375 * 180.02562 * 4 3 2 35 35 H 1.08002 * 120.34919 * 179.97438 * 5 4 3 36 36 H 1.08002 * 120.85824 * 180.29665 * 6 5 4 37 37 H 1.08999 * 109.58606 * 246.15786 * 11 10 8 38 38 H 1.09000 * 109.58748 * 6.44354 * 11 10 8 39 39 H 1.08997 * 109.49816 * 174.58304 * 12 11 10 40 40 H 1.09000 * 109.49785 * 294.68273 * 12 11 10 41 41 H 1.08999 * 109.50277 * 178.62960 * 13 12 11 42 42 H 1.09005 * 109.45041 * 58.65165 * 13 12 11 43 43 H 1.08997 * 109.49631 * 301.37768 * 14 13 12 44 44 H 1.08998 * 109.49666 * 181.31696 * 14 13 12 45 45 H 1.08995 * 110.72001 * 336.76049 * 19 17 15 46 46 H 1.09004 * 110.71476 * 100.03091 * 19 17 15 47 47 H 1.08997 * 110.89673 * 277.26642 * 20 19 17 48 48 H 1.09008 * 111.03306 * 153.47258 * 20 19 17 49 49 H 1.09001 * 110.36893 * 204.23269 * 21 20 19 50 50 H 1.08999 * 110.36942 * 81.90962 * 21 20 19 51 51 H 0.97006 * 120.00078 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1437 0.0000 4 6 3.4781 1.1935 -0.0005 5 6 4.2365 0.0364 -0.0016 6 6 3.5987 -1.1913 0.0038 7 6 2.1986 -1.2117 -0.0005 8 6 1.4655 -2.4956 -0.0005 9 8 0.6184 -2.7118 0.8439 10 7 1.7366 -3.4264 -0.9369 11 6 2.7649 -3.1837 -1.9580 12 6 3.7616 -4.3469 -1.9401 13 6 3.0039 -5.6663 -2.1120 14 6 2.0260 -5.8492 -0.9491 15 6 1.0097 -4.7031 -0.9557 16 1 0.3966 -4.7636 -1.8548 17 6 0.1161 -4.8028 0.2822 18 1 -0.5299 -3.9270 0.3444 19 6 0.9875 -4.9035 1.5518 20 6 0.2043 -5.9200 2.4282 21 6 -0.3610 -6.8863 1.3575 22 7 -0.7012 -6.0230 0.2119 23 6 -1.6257 -6.3097 -0.7568 24 1 -1.8474 -5.5824 -1.5237 25 6 -2.2778 -7.5350 -0.7528 26 7 -2.0072 -8.4215 0.1816 27 14 -3.5395 -7.9258 -2.0738 28 1 -2.8636 -8.5695 -3.2288 29 1 -4.5638 -8.8488 -1.5223 30 1 -4.1940 -6.6698 -2.5202 31 1 -0.3634 0.0706 1.0252 32 1 -0.3633 0.8526 -0.5738 33 1 -0.3633 -0.9232 -0.4515 34 1 3.9734 2.1533 -0.0001 35 1 5.3152 0.0909 -0.0024 36 1 4.1661 -2.1103 0.0079 37 1 2.2965 -3.1189 -2.9400 38 1 3.2846 -2.2511 -1.7387 39 1 4.4743 -4.2279 -2.7561 40 1 4.2944 -4.3549 -0.9893 41 1 3.7128 -6.4941 -2.1241 42 1 2.4514 -5.6478 -3.0515 43 1 2.5753 -5.8431 -0.0076 44 1 1.5035 -6.7994 -1.0592 45 1 1.9788 -5.2868 1.3098 46 1 1.0578 -3.9360 2.0490 47 1 -0.6005 -5.4254 2.9720 48 1 0.8725 -6.4430 3.1125 49 1 -1.2531 -7.3881 1.7324 50 1 0.3942 -7.6179 1.0701 51 1 -2.4626 -9.2780 0.1842 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025264052.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:20 Heat of formation + Delta-G solvation = 65.191804 kcal Electronic energy + Delta-G solvation = -32492.753786 eV Core-core repulsion = 28587.189986 eV Total energy + Delta-G solvation = -3905.563800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.17679 -39.78786 -37.28916 -36.75165 -33.47101 -33.02564 -32.45721 -32.11500 -30.89868 -29.16093 -27.95814 -27.12515 -25.14471 -24.40940 -23.96363 -22.97968 -22.21390 -21.00683 -20.22412 -19.66499 -18.48499 -17.30452 -17.04112 -16.51448 -16.20874 -15.64963 -15.23610 -14.71291 -14.55733 -14.53454 -14.32614 -14.12826 -13.74196 -13.67569 -13.53312 -13.20192 -12.99184 -12.86374 -12.49983 -12.23287 -12.15771 -11.99657 -11.80842 -11.55542 -11.29259 -11.20499 -10.97320 -10.81274 -10.70232 -10.56880 -10.33938 -10.18203 -10.03376 -9.88061 -9.72343 -9.60700 -9.48862 -9.34257 -9.11356 -8.68834 -8.49385 -8.08184 -6.66964 -5.59137 -2.96582 0.67181 0.98504 2.81137 3.13148 3.42547 3.48561 3.50089 3.57708 4.09281 4.43121 4.54510 4.57234 4.58289 4.80785 4.84029 4.94273 5.06855 5.22387 5.34991 5.37745 5.46288 5.50254 5.51582 5.55040 5.66122 5.67908 5.80485 5.81807 5.86245 5.93355 5.95020 6.00602 6.04382 6.06587 6.12645 6.18297 6.34472 6.41057 6.44844 6.53355 6.62979 6.75920 6.83495 6.97652 7.05754 7.07554 7.52896 7.61871 7.69106 7.73014 7.76461 7.97238 8.38553 8.50700 9.31480 9.94057 10.61814 11.46613 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014792 B = 0.003733 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.477498 B = 7498.451625 C = 7886.625745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.175 3.825 3 N -0.488 5.488 4 C 0.115 3.885 5 C -0.187 4.187 6 C -0.046 4.046 7 C -0.170 4.170 8 C 0.546 3.454 9 O -0.494 6.494 10 N -0.594 5.594 11 C 0.098 3.902 12 C -0.132 4.132 13 C -0.120 4.120 14 C -0.125 4.125 15 C 0.136 3.864 16 H 0.072 0.928 17 C 0.164 3.836 18 H 0.077 0.923 19 C -0.126 4.126 20 C -0.150 4.150 21 C 0.162 3.838 22 N -0.596 5.596 23 C -0.217 4.217 24 H 0.074 0.926 25 C -0.010 4.010 26 N -0.920 5.920 27 Si 0.907 3.093 28 H -0.291 1.291 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.158 0.842 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.082 0.918 47 H 0.055 0.945 48 H 0.048 0.952 49 H 0.092 0.908 50 H 0.010 0.990 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.560 14.620 -2.484 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.037 3.963 3 N -0.197 5.197 4 C -0.043 4.043 5 C -0.207 4.207 6 C -0.072 4.072 7 C -0.175 4.175 8 C 0.333 3.667 9 O -0.370 6.370 10 N -0.327 5.327 11 C -0.025 4.025 12 C -0.170 4.170 13 C -0.158 4.158 14 C -0.163 4.163 15 C 0.032 3.968 16 H 0.090 0.910 17 C 0.057 3.943 18 H 0.094 0.906 19 C -0.163 4.163 20 C -0.188 4.188 21 C 0.037 3.963 22 N -0.320 5.320 23 C -0.346 4.346 24 H 0.091 0.909 25 C -0.206 4.206 26 N -0.569 5.569 27 Si 0.738 3.262 28 H -0.218 1.218 29 H -0.218 1.218 30 H -0.208 1.208 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.175 0.825 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.110 0.890 50 H 0.028 0.972 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.435 15.076 -2.093 20.977 hybrid contribution 0.268 -1.176 -0.931 1.524 sum 14.703 13.900 -3.024 20.458 Atomic orbital electron populations 1.20799 0.87900 1.03608 1.04024 1.21401 0.97304 0.86622 0.90966 1.67574 1.09988 1.28740 1.13412 1.22886 0.89431 0.98614 0.93352 1.22047 1.01597 0.93108 1.03948 1.21742 0.93072 0.98907 0.93509 1.21025 0.94663 0.95611 1.06229 1.18003 0.83784 0.82883 0.82016 1.90833 1.32003 1.77404 1.36802 1.48203 1.38194 1.17272 1.29052 1.21904 0.89788 0.98709 0.92127 1.21913 0.97596 0.95521 1.01946 1.21565 0.98392 0.96239 0.99614 1.21970 0.96727 1.00108 0.97504 1.22254 0.92285 0.79591 1.02658 0.90974 1.21666 0.91359 0.91327 0.89965 0.90568 1.23114 0.97313 0.99131 0.96753 1.23053 0.98851 0.98602 0.98344 1.21700 0.99089 0.90299 0.85179 1.44747 1.42074 1.17832 1.27370 1.19008 1.13017 0.98659 1.03899 0.90864 1.24745 1.00509 0.96463 0.98845 1.69895 1.45310 1.07461 1.34212 0.86185 0.81120 0.77806 0.81096 1.21836 1.21793 1.20797 0.89418 0.90560 0.90109 0.82520 0.84373 0.84313 0.91543 0.89968 0.91232 0.91834 0.92161 0.92022 0.91675 0.89410 0.92974 0.89965 0.92649 0.93319 0.88999 0.97246 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.41 36.01 0.34 -1.01 16 2 C 0.18 2.29 6.82 -82.17 -0.56 1.73 16 3 N -0.49 -5.96 10.26 -9.15 -0.09 -6.06 16 4 C 0.11 1.06 11.17 -17.47 -0.20 0.86 16 5 C -0.19 -1.53 10.10 -39.50 -0.40 -1.93 16 6 C -0.05 -0.46 7.53 -38.87 -0.29 -0.75 16 7 C -0.17 -2.19 4.95 -104.82 -0.52 -2.71 16 8 C 0.55 8.41 5.63 -12.33 -0.07 8.34 16 9 O -0.49 -9.11 8.89 5.32 0.05 -9.06 16 10 N -0.59 -8.74 2.95 -166.33 -0.49 -9.23 16 11 C 0.10 1.10 5.86 -3.71 -0.02 1.08 16 12 C -0.13 -1.36 6.08 -26.58 -0.16 -1.52 16 13 C -0.12 -1.57 5.89 -26.65 -0.16 -1.72 16 14 C -0.13 -2.12 4.96 -26.62 -0.13 -2.25 16 15 C 0.14 2.47 2.70 -67.60 -0.18 2.28 16 16 H 0.07 1.45 7.84 -51.93 -0.41 1.04 16 17 C 0.16 3.50 2.28 -66.95 -0.15 3.35 16 18 H 0.08 1.81 5.80 -52.43 -0.30 1.50 16 19 C -0.13 -2.47 5.09 -24.77 -0.13 -2.60 16 20 C -0.15 -3.15 7.09 -24.45 -0.17 -3.32 16 21 C 0.16 4.05 5.74 -2.53 -0.01 4.03 16 22 N -0.60 -15.07 2.75 -162.57 -0.45 -15.51 16 23 C -0.22 -5.95 9.75 -15.06 -0.15 -6.10 16 24 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 25 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 26 N -0.92 -26.89 10.18 55.49 0.56 -26.32 16 27 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 30 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.13 6.60 -51.93 -0.34 0.79 16 34 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.14 1.20 7.45 -52.49 -0.39 0.81 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.79 4.36 -51.93 -0.23 0.56 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.11 5.55 -51.93 -0.29 0.82 16 44 H 0.09 1.80 7.96 -51.93 -0.41 1.39 16 45 H 0.05 0.98 5.24 -51.93 -0.27 0.70 16 46 H 0.08 1.63 5.61 -51.86 -0.29 1.34 16 47 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 49 H 0.09 2.59 6.13 -51.93 -0.32 2.27 16 50 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 51 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -31.20 378.66 -10.67 -41.87 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.87 Total: 4.11 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -3.06 Total: -2.61 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -0.47 Total: -57.13 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.05 Total: -9.06 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.20 -10.67 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025264052.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.061 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds