Wall clock time and date at job start Wed Apr 1 2020 02:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31686 * 119.71975 * 2 1 4 4 C 1.31936 * 121.87824 * 180.26677 * 3 2 1 5 5 C 1.38348 * 121.07713 * 359.74743 * 4 3 2 6 6 C 1.38352 * 119.30874 * 359.97438 * 5 4 3 7 7 C 1.39527 * 119.71220 * 179.72833 * 2 1 3 8 8 C 1.47839 * 120.55896 * 359.97438 * 7 2 1 9 9 O 1.21556 * 119.99951 * 54.42780 * 8 7 2 10 10 N 1.34773 * 120.00231 * 234.42206 * 8 7 2 11 11 C 1.46961 * 120.65206 * 6.78558 * 10 8 7 12 12 C 1.53191 * 108.88972 * 126.46453 * 11 10 8 13 13 C 1.53042 * 109.31056 * 54.55764 * 12 11 10 14 14 C 1.53045 * 109.53856 * 298.63508 * 13 12 11 15 15 C 1.46924 * 120.63353 * 186.60473 * 10 8 7 16 16 H 1.09000 * 109.58709 * 113.67800 * 15 10 8 17 17 C 1.52999 * 109.58406 * 353.39777 * 15 10 8 18 18 H 1.08995 * 110.00220 * 313.92640 * 17 15 10 19 19 C 1.54315 * 109.77589 * 75.08540 * 17 15 10 20 20 C 1.55160 * 102.86462 * 141.88380 * 19 17 15 21 21 C 1.54912 * 101.57862 * 324.30220 * 20 19 17 22 22 N 1.47030 * 109.88106 * 192.83342 * 17 15 10 23 23 C 1.36935 * 125.64824 * 61.67357 * 22 17 15 24 24 H 1.08005 * 119.99750 * 355.54972 * 23 22 17 25 25 C 1.38810 * 120.00104 * 175.54406 * 23 22 17 26 26 N 1.31614 * 119.99855 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00056 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47307 * 269.99934 * 27 25 23 29 29 H 1.48501 * 109.47016 * 29.99951 * 27 25 23 30 30 H 1.48500 * 109.47147 * 149.99732 * 27 25 23 31 31 H 1.08999 * 109.47244 * 275.20322 * 1 2 3 32 32 H 1.09007 * 109.46682 * 35.19792 * 1 2 3 33 33 H 1.09000 * 109.47356 * 155.19664 * 1 2 3 34 34 H 1.08003 * 119.45833 * 179.72407 * 4 3 2 35 35 H 1.08003 * 120.34534 * 179.97438 * 5 4 3 36 36 H 1.07996 * 120.86228 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.59698 * 6.60197 * 11 10 8 38 38 H 1.09004 * 109.46834 * 246.25146 * 11 10 8 39 39 H 1.09005 * 109.49879 * 294.61198 * 12 11 10 40 40 H 1.09002 * 109.50200 * 174.50760 * 12 11 10 41 41 H 1.09001 * 109.46120 * 178.61503 * 13 12 11 42 42 H 1.09003 * 109.45182 * 58.65232 * 13 12 11 43 43 H 1.08997 * 109.49665 * 301.41671 * 14 13 12 44 44 H 1.09000 * 109.52283 * 181.32754 * 14 13 12 45 45 H 1.09001 * 110.92537 * 23.47037 * 19 17 15 46 46 H 1.08993 * 110.74197 * 260.21546 * 19 17 15 47 47 H 1.08997 * 111.00292 * 206.23084 * 20 19 17 48 48 H 1.09000 * 111.00485 * 82.37496 * 20 19 17 49 49 H 1.08999 * 110.36951 * 278.16889 * 21 20 19 50 50 H 1.09009 * 110.45924 * 155.89362 * 21 20 19 51 51 H 0.97001 * 120.00042 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1436 0.0000 4 6 3.4783 1.1933 -0.0052 5 6 4.2365 0.0362 -0.0057 6 6 3.5987 -1.1915 -0.0001 7 6 2.1986 -1.2118 0.0057 8 6 1.4654 -2.4956 0.0124 9 8 0.6319 -2.7239 -0.8424 10 7 1.7213 -3.4128 0.9661 11 6 2.6146 -3.0966 2.0894 12 6 1.8846 -3.3950 3.4028 13 6 1.3835 -4.8409 3.3860 14 6 0.3962 -5.0271 2.2315 15 6 1.1093 -4.7472 0.9050 16 1 1.8832 -5.4969 0.7408 17 6 0.0973 -4.7952 -0.2415 18 1 -0.5341 -3.9071 -0.2188 19 6 0.8409 -4.8793 -1.5911 20 6 -0.0486 -5.8467 -2.4159 21 6 -0.5284 -6.8352 -1.3239 22 7 -0.7336 -6.0025 -0.1248 23 6 -1.5646 -6.3013 0.9217 24 1 -1.5952 -5.6569 1.7879 25 6 -2.3678 -7.4322 0.8692 26 7 -2.3302 -8.2176 -0.1862 27 14 -3.5020 -7.8394 2.2964 28 1 -2.7829 -8.6991 3.2705 29 1 -3.9274 -6.5832 2.9646 30 1 -4.6975 -8.5594 1.7889 31 1 -0.3634 0.0932 1.0234 32 1 -0.3633 0.8398 -0.5924 33 1 -0.3634 -0.9329 -0.4311 34 1 3.9736 2.1531 -0.0095 35 1 5.3152 0.0906 -0.0104 36 1 4.1659 -2.1105 0.0000 37 1 2.8868 -2.0417 2.0542 38 1 3.5130 -3.7103 2.0231 39 1 1.0374 -2.7176 3.5102 40 1 2.5697 -3.2571 4.2393 41 1 0.8851 -5.0635 4.3295 42 1 2.2286 -5.5165 3.2537 43 1 -0.4369 -4.3343 2.3500 44 1 0.0215 -6.0507 2.2342 45 1 1.8409 -5.2925 -1.4595 46 1 0.8895 -3.8999 -2.0668 47 1 0.5362 -6.3608 -3.1786 48 1 -0.8912 -5.3183 -2.8620 49 1 0.2338 -7.5911 -1.1351 50 1 -1.4644 -7.3076 -1.6223 51 1 -2.8917 -9.0077 -0.2231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025264053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:24 Heat of formation + Delta-G solvation = 70.948446 kcal Electronic energy + Delta-G solvation = -32509.107813 eV Core-core repulsion = 28603.793640 eV Total energy + Delta-G solvation = -3905.314173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.11282 -39.74675 -37.27119 -36.77495 -33.42964 -32.95017 -32.63695 -31.96039 -31.19733 -28.98911 -27.93031 -27.11602 -25.09029 -24.64443 -23.97399 -22.71333 -22.06611 -21.04969 -19.83721 -19.40046 -19.22572 -17.36781 -16.91414 -16.54394 -16.15589 -15.70194 -15.42560 -14.95196 -14.46711 -14.39913 -14.17868 -13.88158 -13.84506 -13.71017 -13.27045 -13.04117 -12.97727 -12.64625 -12.48534 -12.25471 -12.13981 -12.07663 -11.82942 -11.53530 -11.44769 -11.03921 -10.94435 -10.87221 -10.73250 -10.66318 -10.23991 -10.12595 -10.02101 -9.93322 -9.70411 -9.62734 -9.29787 -9.09937 -9.04988 -8.72507 -8.45623 -8.10886 -6.68115 -5.55185 -2.98408 0.68320 1.01053 2.78313 3.14721 3.40854 3.46797 3.48502 3.58549 4.11544 4.45582 4.53759 4.57815 4.60725 4.85304 4.85981 5.01783 5.12110 5.26289 5.36545 5.38060 5.49543 5.54991 5.58156 5.58925 5.64132 5.72135 5.82271 5.84039 5.90467 5.96882 5.98938 6.07161 6.09753 6.13091 6.18999 6.26329 6.32794 6.46291 6.53584 6.58548 6.67618 6.75807 6.93291 7.00295 7.08847 7.21609 7.54448 7.61825 7.65933 7.74477 7.77391 7.99809 8.42272 8.54282 9.30838 9.93619 10.61004 11.44414 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.003831 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.426164 B = 7307.124664 C = 7930.515182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.176 3.824 3 N -0.488 5.488 4 C 0.114 3.886 5 C -0.187 4.187 6 C -0.044 4.044 7 C -0.170 4.170 8 C 0.547 3.453 9 O -0.494 6.494 10 N -0.595 5.595 11 C 0.107 3.893 12 C -0.133 4.133 13 C -0.124 4.124 14 C -0.134 4.134 15 C 0.138 3.862 16 H 0.061 0.939 17 C 0.166 3.834 18 H 0.073 0.927 19 C -0.121 4.121 20 C -0.147 4.147 21 C 0.143 3.857 22 N -0.597 5.597 23 C -0.223 4.223 24 H 0.090 0.910 25 C -0.013 4.013 26 N -0.918 5.918 27 Si 0.906 3.094 28 H -0.290 1.290 29 H -0.282 1.282 30 H -0.291 1.291 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.157 0.843 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.117 0.883 45 H 0.039 0.961 46 H 0.090 0.910 47 H 0.048 0.952 48 H 0.056 0.944 49 H 0.002 0.998 50 H 0.112 0.888 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.374 14.544 3.362 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.038 3.962 3 N -0.197 5.197 4 C -0.044 4.044 5 C -0.207 4.207 6 C -0.071 4.071 7 C -0.175 4.175 8 C 0.334 3.666 9 O -0.371 6.371 10 N -0.328 5.328 11 C -0.016 4.016 12 C -0.171 4.171 13 C -0.161 4.161 14 C -0.171 4.171 15 C 0.034 3.966 16 H 0.079 0.921 17 C 0.059 3.941 18 H 0.090 0.910 19 C -0.159 4.159 20 C -0.186 4.186 21 C 0.018 3.982 22 N -0.321 5.321 23 C -0.351 4.351 24 H 0.107 0.893 25 C -0.208 4.208 26 N -0.567 5.567 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.207 1.207 30 H -0.218 1.218 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.174 0.826 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.135 0.865 45 H 0.058 0.942 46 H 0.108 0.892 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.020 0.980 50 H 0.130 0.870 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 13.263 15.001 2.966 20.242 hybrid contribution 0.435 -1.067 0.945 1.490 sum 13.699 13.934 3.911 19.927 Atomic orbital electron populations 1.21024 0.88048 1.05575 1.03371 1.21399 0.97309 0.86610 0.90890 1.67591 1.09961 1.28809 1.13385 1.22887 0.89459 0.98603 0.93410 1.22039 1.01575 0.93121 1.03918 1.21727 0.92999 0.98886 0.93446 1.20998 0.94668 0.95655 1.06222 1.18058 0.83655 0.82820 0.82066 1.90809 1.32252 1.76393 1.37643 1.48230 1.47000 1.14304 1.23309 1.21751 0.92722 1.00714 0.86450 1.21906 1.00372 0.98543 0.96268 1.21639 0.99640 0.95071 0.99770 1.22522 0.96927 1.05732 0.91962 1.22324 0.95526 0.80093 0.98622 0.92130 1.21539 0.90919 0.91429 0.90191 0.90953 1.23012 0.96594 0.99506 0.96742 1.22983 0.98593 0.98710 0.98280 1.22080 1.01317 0.90523 0.84236 1.44767 1.47087 1.19741 1.20521 1.19405 1.13576 1.06486 0.95610 0.89285 1.24816 1.00003 0.98193 0.97815 1.69744 1.42715 1.16215 1.28000 0.86198 0.80604 0.78009 0.81528 1.21788 1.20722 1.21762 0.90382 0.90252 0.88105 0.82558 0.84414 0.84465 0.90568 0.91724 0.91724 0.91474 0.92110 0.92387 0.92122 0.86504 0.94196 0.89187 0.93359 0.92528 0.97986 0.87027 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 9.88 36.01 0.36 -1.23 16 2 C 0.18 2.33 6.82 -82.17 -0.56 1.77 16 3 N -0.49 -6.05 10.26 -9.14 -0.09 -6.14 16 4 C 0.11 1.07 11.17 -17.47 -0.20 0.87 16 5 C -0.19 -1.56 10.10 -39.50 -0.40 -1.96 16 6 C -0.04 -0.45 8.03 -38.87 -0.31 -0.76 16 7 C -0.17 -2.21 4.55 -104.82 -0.48 -2.68 16 8 C 0.55 8.45 6.15 -12.33 -0.08 8.37 16 9 O -0.49 -9.08 7.83 5.32 0.04 -9.04 16 10 N -0.59 -8.82 2.98 -166.30 -0.50 -9.31 16 11 C 0.11 1.23 5.67 -3.69 -0.02 1.20 16 12 C -0.13 -1.53 6.08 -26.61 -0.16 -1.70 16 13 C -0.12 -1.71 5.88 -26.69 -0.16 -1.87 16 14 C -0.13 -2.40 3.61 -26.61 -0.10 -2.50 16 15 C 0.14 2.50 2.66 -67.60 -0.18 2.32 16 16 H 0.06 1.14 7.81 -51.93 -0.41 0.74 16 17 C 0.17 3.55 2.31 -66.95 -0.15 3.40 16 18 H 0.07 1.71 5.92 -51.58 -0.31 1.40 16 19 C -0.12 -2.43 5.35 -24.90 -0.13 -2.56 16 20 C -0.15 -3.12 7.08 -24.58 -0.17 -3.30 16 21 C 0.14 3.60 6.06 -2.53 -0.02 3.59 16 22 N -0.60 -14.98 3.10 -162.57 -0.50 -15.48 16 23 C -0.22 -5.88 7.74 -15.06 -0.12 -6.00 16 24 H 0.09 2.24 5.00 -52.48 -0.26 1.98 16 25 C -0.01 -0.35 5.48 -17.43 -0.10 -0.45 16 26 N -0.92 -26.59 10.03 55.49 0.56 -26.03 16 27 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 30 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.10 1.51 5.54 -51.93 -0.29 1.22 16 34 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 35 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.14 1.20 7.89 -52.49 -0.41 0.79 16 37 H 0.08 0.78 5.50 -51.93 -0.29 0.50 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.17 7.31 -51.93 -0.38 0.79 16 44 H 0.12 2.48 5.43 -51.93 -0.28 2.20 16 45 H 0.04 0.77 7.65 -51.93 -0.40 0.37 16 46 H 0.09 1.80 5.45 -52.90 -0.29 1.51 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 50 H 0.11 3.15 5.60 -51.92 -0.29 2.86 16 51 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 374.67 15.07 5.65 5.65 Total: -1.00 -30.52 374.67 -10.65 -41.17 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.81 Total: 5.99 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.97 Total: -3.49 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.54 Total: -56.97 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.04 Total: -9.04 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.52 -10.65 -41.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025264053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.117 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds