Wall clock time and date at job start Wed Apr 1 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31686 * 119.71975 * 2 1 4 4 C 1.31936 * 121.87824 * 180.26677 * 3 2 1 5 5 C 1.38348 * 121.07713 * 359.74743 * 4 3 2 6 6 C 1.38352 * 119.30874 * 359.97438 * 5 4 3 7 7 C 1.39527 * 119.71220 * 179.72833 * 2 1 3 8 8 C 1.47839 * 120.55896 * 359.97438 * 7 2 1 9 9 O 1.21556 * 119.99951 * 54.42780 * 8 7 2 10 10 N 1.34773 * 120.00231 * 234.42206 * 8 7 2 11 11 C 1.46961 * 120.65206 * 6.78558 * 10 8 7 12 12 C 1.53191 * 108.88972 * 126.46453 * 11 10 8 13 13 C 1.53042 * 109.31056 * 54.55764 * 12 11 10 14 14 C 1.53045 * 109.53856 * 298.63508 * 13 12 11 15 15 C 1.46924 * 120.63353 * 186.60473 * 10 8 7 16 16 H 1.09000 * 109.58709 * 113.67800 * 15 10 8 17 17 C 1.52999 * 109.58406 * 353.39777 * 15 10 8 18 18 H 1.08995 * 110.00220 * 313.92640 * 17 15 10 19 19 C 1.54315 * 109.77589 * 75.08540 * 17 15 10 20 20 C 1.55160 * 102.86462 * 141.88380 * 19 17 15 21 21 C 1.54912 * 101.57862 * 324.30220 * 20 19 17 22 22 N 1.47030 * 109.88106 * 192.83342 * 17 15 10 23 23 C 1.36935 * 125.64824 * 61.67357 * 22 17 15 24 24 H 1.08005 * 119.99750 * 355.54972 * 23 22 17 25 25 C 1.38810 * 120.00104 * 175.54406 * 23 22 17 26 26 N 1.31614 * 119.99855 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00056 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47307 * 269.99934 * 27 25 23 29 29 H 1.48501 * 109.47016 * 29.99951 * 27 25 23 30 30 H 1.48500 * 109.47147 * 149.99732 * 27 25 23 31 31 H 1.08999 * 109.47244 * 275.20322 * 1 2 3 32 32 H 1.09007 * 109.46682 * 35.19792 * 1 2 3 33 33 H 1.09000 * 109.47356 * 155.19664 * 1 2 3 34 34 H 1.08003 * 119.45833 * 179.72407 * 4 3 2 35 35 H 1.08003 * 120.34534 * 179.97438 * 5 4 3 36 36 H 1.07996 * 120.86228 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.59698 * 6.60197 * 11 10 8 38 38 H 1.09004 * 109.46834 * 246.25146 * 11 10 8 39 39 H 1.09005 * 109.49879 * 294.61198 * 12 11 10 40 40 H 1.09002 * 109.50200 * 174.50760 * 12 11 10 41 41 H 1.09001 * 109.46120 * 178.61503 * 13 12 11 42 42 H 1.09003 * 109.45182 * 58.65232 * 13 12 11 43 43 H 1.08997 * 109.49665 * 301.41671 * 14 13 12 44 44 H 1.09000 * 109.52283 * 181.32754 * 14 13 12 45 45 H 1.09001 * 110.92537 * 23.47037 * 19 17 15 46 46 H 1.08993 * 110.74197 * 260.21546 * 19 17 15 47 47 H 1.08997 * 111.00292 * 206.23084 * 20 19 17 48 48 H 1.09000 * 111.00485 * 82.37496 * 20 19 17 49 49 H 1.08999 * 110.36951 * 278.16889 * 21 20 19 50 50 H 1.09009 * 110.45924 * 155.89362 * 21 20 19 51 51 H 0.97001 * 120.00042 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1599 1.1436 0.0000 4 6 3.4783 1.1933 -0.0052 5 6 4.2365 0.0362 -0.0057 6 6 3.5987 -1.1915 -0.0001 7 6 2.1986 -1.2118 0.0057 8 6 1.4654 -2.4956 0.0124 9 8 0.6319 -2.7239 -0.8424 10 7 1.7213 -3.4128 0.9661 11 6 2.6146 -3.0966 2.0894 12 6 1.8846 -3.3950 3.4028 13 6 1.3835 -4.8409 3.3860 14 6 0.3962 -5.0271 2.2315 15 6 1.1093 -4.7472 0.9050 16 1 1.8832 -5.4969 0.7408 17 6 0.0973 -4.7952 -0.2415 18 1 -0.5341 -3.9071 -0.2188 19 6 0.8409 -4.8793 -1.5911 20 6 -0.0486 -5.8467 -2.4159 21 6 -0.5284 -6.8352 -1.3239 22 7 -0.7336 -6.0025 -0.1248 23 6 -1.5646 -6.3013 0.9217 24 1 -1.5952 -5.6569 1.7879 25 6 -2.3678 -7.4322 0.8692 26 7 -2.3302 -8.2176 -0.1862 27 14 -3.5020 -7.8394 2.2964 28 1 -2.7829 -8.6991 3.2705 29 1 -3.9274 -6.5832 2.9646 30 1 -4.6975 -8.5594 1.7889 31 1 -0.3634 0.0932 1.0234 32 1 -0.3633 0.8398 -0.5924 33 1 -0.3634 -0.9329 -0.4311 34 1 3.9736 2.1531 -0.0095 35 1 5.3152 0.0906 -0.0104 36 1 4.1659 -2.1105 0.0000 37 1 2.8868 -2.0417 2.0542 38 1 3.5130 -3.7103 2.0231 39 1 1.0374 -2.7176 3.5102 40 1 2.5697 -3.2571 4.2393 41 1 0.8851 -5.0635 4.3295 42 1 2.2286 -5.5165 3.2537 43 1 -0.4369 -4.3343 2.3500 44 1 0.0215 -6.0507 2.2342 45 1 1.8409 -5.2925 -1.4595 46 1 0.8895 -3.8999 -2.0668 47 1 0.5362 -6.3608 -3.1786 48 1 -0.8912 -5.3183 -2.8620 49 1 0.2338 -7.5911 -1.1351 50 1 -1.4644 -7.3076 -1.6223 51 1 -2.8917 -9.0077 -0.2231 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025264053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:23 Heat of formation + Delta-G solvation = 53.474348 kcal Electronic energy + Delta-G solvation = -32509.865547 eV Core-core repulsion = 28603.793640 eV Total energy + Delta-G solvation = -3906.071907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.22957 -40.81310 -38.73899 -38.19960 -34.56135 -34.44060 -33.85162 -33.19121 -32.51594 -30.86476 -28.97348 -28.52226 -26.66677 -26.20317 -24.97243 -23.95329 -23.07998 -22.35195 -21.57172 -21.01384 -20.45972 -18.99148 -17.80889 -17.75646 -17.33286 -16.97284 -16.94063 -16.22768 -15.91094 -15.68230 -15.45951 -15.25116 -15.14158 -14.65194 -14.47667 -14.24126 -14.05614 -14.01476 -13.75906 -13.65426 -13.40498 -13.33248 -13.20616 -13.06528 -13.04787 -12.78045 -12.69919 -12.33480 -12.18128 -12.01275 -11.98713 -11.69060 -11.51102 -11.32297 -10.97800 -10.87131 -10.77724 -10.65194 -10.59318 -10.07422 -9.86537 -9.40260 -8.70260 -7.64704 -5.09953 -0.15257 0.23621 1.46381 1.48025 1.55971 1.64454 1.99343 2.54635 2.75540 3.27987 3.37403 3.50668 3.72999 3.79470 3.89164 3.95573 3.98770 4.03587 4.11163 4.16901 4.23298 4.30725 4.39479 4.47250 4.52295 4.56196 4.60937 4.62705 4.63754 4.66992 4.76696 4.85358 4.94189 4.97325 5.03813 5.07590 5.11271 5.12310 5.16725 5.19079 5.28766 5.32745 5.40592 5.53071 5.58597 5.67379 5.70142 5.71671 5.88632 5.91947 6.40362 6.50553 6.95327 7.18463 7.26538 7.90326 8.56346 9.34321 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015377 B = 0.003831 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.426164 B = 7307.124664 C = 7930.515182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.158 3.842 3 N -0.510 5.510 4 C 0.113 3.887 5 C -0.168 4.168 6 C -0.043 4.043 7 C -0.186 4.186 8 C 0.546 3.454 9 O -0.534 6.534 10 N -0.593 5.593 11 C 0.105 3.895 12 C -0.127 4.127 13 C -0.118 4.118 14 C -0.127 4.127 15 C 0.151 3.849 16 H 0.057 0.943 17 C 0.166 3.834 18 H 0.049 0.951 19 C -0.107 4.107 20 C -0.138 4.138 21 C 0.147 3.853 22 N -0.614 5.614 23 C -0.217 4.217 24 H 0.097 0.903 25 C -0.074 4.074 26 N -0.951 5.951 27 Si 0.967 3.033 28 H -0.285 1.285 29 H -0.271 1.271 30 H -0.299 1.299 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.191 0.809 35 H 0.180 0.820 36 H 0.156 0.844 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.050 0.950 46 H 0.096 0.904 47 H 0.073 0.927 48 H 0.048 0.952 49 H -0.017 1.017 50 H 0.079 0.921 51 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.171 16.993 4.910 25.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.020 3.980 3 N -0.219 5.219 4 C -0.044 4.044 5 C -0.187 4.187 6 C -0.069 4.069 7 C -0.191 4.191 8 C 0.335 3.665 9 O -0.413 6.413 10 N -0.326 5.326 11 C -0.017 4.017 12 C -0.165 4.165 13 C -0.155 4.155 14 C -0.165 4.165 15 C 0.046 3.954 16 H 0.075 0.925 17 C 0.060 3.940 18 H 0.067 0.933 19 C -0.144 4.144 20 C -0.176 4.176 21 C 0.021 3.979 22 N -0.339 5.339 23 C -0.346 4.346 24 H 0.114 0.886 25 C -0.265 4.265 26 N -0.602 5.602 27 Si 0.796 3.204 28 H -0.213 1.213 29 H -0.197 1.197 30 H -0.226 1.226 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.208 0.792 35 H 0.197 0.803 36 H 0.173 0.827 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.057 0.943 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.114 0.886 47 H 0.092 0.908 48 H 0.066 0.934 49 H 0.001 0.999 50 H 0.097 0.903 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 17.101 17.500 4.548 24.887 hybrid contribution -0.646 -1.675 0.454 1.852 sum 16.455 15.824 5.002 23.371 Atomic orbital electron populations 1.20901 0.89100 1.04241 1.03397 1.21301 0.97087 0.87269 0.92317 1.67597 1.11762 1.28294 1.14296 1.23576 0.88514 1.00742 0.91602 1.22458 1.03479 0.91618 1.01149 1.21993 0.91597 1.00663 0.92640 1.20732 0.95896 0.93704 1.08765 1.18496 0.83037 0.83584 0.81345 1.90767 1.33969 1.77364 1.39176 1.48180 1.47210 1.12792 1.24417 1.22035 0.92571 1.02375 0.84721 1.21888 1.00744 0.96153 0.97695 1.21577 0.98796 0.97293 0.97847 1.22255 0.97544 1.02655 0.94043 1.21760 0.94547 0.82062 0.97057 0.92513 1.21546 0.91197 0.88747 0.92509 0.93327 1.22919 0.96447 0.99422 0.95601 1.22874 0.98887 0.98066 0.97786 1.21850 0.99190 0.91144 0.85695 1.45028 1.47889 1.20719 1.20220 1.19763 1.12822 1.06040 0.95940 0.88594 1.25571 1.01996 0.98695 1.00269 1.69996 1.43819 1.16596 1.29832 0.85222 0.78380 0.77862 0.78889 1.21252 1.19652 1.22642 0.90088 0.89834 0.90745 0.79177 0.80290 0.82659 0.88682 0.89367 0.92875 0.87901 0.91504 0.91340 0.94270 0.90255 0.93097 0.88631 0.90848 0.93355 0.99908 0.90305 0.94816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.88 71.24 0.70 -2.46 16 2 C 0.16 4.00 6.82 42.89 0.29 4.30 16 3 N -0.51 -11.45 10.26 -182.84 -1.88 -13.32 16 4 C 0.11 1.63 11.17 84.70 0.95 2.58 16 5 C -0.17 -1.91 10.10 22.32 0.23 -1.69 16 6 C -0.04 -0.70 8.03 22.73 0.18 -0.52 16 7 C -0.19 -4.47 4.55 -19.99 -0.09 -4.56 16 8 C 0.55 16.58 6.15 86.79 0.53 17.11 16 9 O -0.53 -20.12 7.83 -3.89 -0.03 -20.15 16 10 N -0.59 -16.84 2.98 -798.33 -2.38 -19.22 16 11 C 0.10 2.03 5.67 86.36 0.49 2.52 16 12 C -0.13 -2.53 6.08 30.67 0.19 -2.34 16 13 C -0.12 -3.04 5.88 30.62 0.18 -2.86 16 14 C -0.13 -4.62 3.61 30.67 0.11 -4.51 16 15 C 0.15 5.46 2.66 44.97 0.12 5.58 16 16 H 0.06 2.12 7.81 -2.39 -0.02 2.10 16 17 C 0.17 7.32 2.31 45.34 0.10 7.43 16 18 H 0.05 2.42 5.92 -5.95 -0.04 2.39 16 19 C -0.11 -4.31 5.35 31.78 0.17 -4.14 16 20 C -0.14 -5.98 7.08 31.99 0.23 -5.76 16 21 C 0.15 7.74 6.06 86.86 0.53 8.26 16 22 N -0.61 -32.28 3.10 -668.26 -2.07 -34.35 16 23 C -0.22 -11.97 7.74 84.03 0.65 -11.32 16 24 H 0.10 5.04 5.00 -2.91 -0.01 5.03 16 25 C -0.07 -4.22 5.48 84.86 0.47 -3.76 16 26 N -0.95 -57.99 10.03 21.65 0.22 -57.77 16 27 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 28 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 29 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 30 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.07 2.37 5.54 -2.39 -0.01 2.36 16 34 H 0.19 1.36 8.06 -2.91 -0.02 1.33 16 35 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.16 1.96 7.89 -2.91 -0.02 1.94 16 37 H 0.09 1.56 5.50 -2.39 -0.01 1.54 16 38 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.04 1.56 7.31 -2.39 -0.02 1.54 16 44 H 0.08 3.49 5.43 -2.39 -0.01 3.48 16 45 H 0.05 1.92 7.65 -2.39 -0.02 1.90 16 46 H 0.10 3.85 5.45 -26.87 -0.15 3.71 16 47 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 48 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 49 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 50 H 0.08 4.73 5.60 -2.38 -0.01 4.72 16 51 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -72.09 374.67 2.70 -69.39 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.78 Total: 23.23 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 6.02 Total: 3.87 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -6.11 Total: -124.66 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.03 Total: -20.15 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -72.09 2.70 -69.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025264053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.868 kcal (2) G-P(sol) polarization free energy of solvation -72.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds