Wall clock time and date at job start Wed Apr 1 2020 02:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38180 * 119.55073 * 2 1 4 4 C 1.39795 * 118.99763 * 179.97438 * 3 2 1 5 5 C 1.48149 * 120.91877 * 179.97438 * 4 3 2 6 6 O 1.21517 * 120.00254 * 36.89383 * 5 4 3 7 7 N 1.34774 * 120.00035 * 216.88470 * 5 4 3 8 8 C 1.46933 * 120.63123 * 358.05829 * 7 5 4 9 9 C 1.53624 * 108.54155 * 126.36411 * 8 7 5 10 10 C 1.53047 * 109.24264 * 54.85822 * 9 8 7 11 11 C 1.53036 * 109.53918 * 298.51157 * 10 9 8 12 12 C 1.46931 * 120.63224 * 178.33747 * 7 5 4 13 13 H 1.09002 * 109.58555 * 113.80461 * 12 7 5 14 14 C 1.52994 * 109.58394 * 353.37356 * 12 7 5 15 15 H 1.09002 * 109.87353 * 46.62826 * 14 12 7 16 16 C 1.54321 * 109.88635 * 285.44794 * 14 12 7 17 17 C 1.55155 * 102.94407 * 218.39048 * 16 14 12 18 18 C 1.54909 * 101.58099 * 35.50366 * 17 16 14 19 19 N 1.47024 * 109.88262 * 167.63904 * 14 12 7 20 20 C 1.36939 * 125.64773 * 298.32766 * 19 14 12 21 21 H 1.07995 * 120.00114 * 344.91173 * 20 19 14 22 22 C 1.38815 * 119.99952 * 164.91278 * 20 19 14 23 23 N 1.31623 * 120.00096 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99789 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46812 * 90.00424 * 24 22 20 26 26 H 1.48503 * 109.46804 * 210.00216 * 24 22 20 27 27 H 1.48501 * 109.47179 * 330.00191 * 24 22 20 28 28 C 1.39834 * 118.15992 * 0.02562 * 4 3 2 29 29 C 1.38135 * 118.99931 * 0.02562 * 28 4 3 30 30 N 1.31796 * 119.55373 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47167 * 89.99827 * 1 2 3 32 32 H 1.08995 * 109.47101 * 210.00013 * 1 2 3 33 33 H 1.09006 * 109.47172 * 329.99812 * 1 2 3 34 34 H 1.08002 * 120.49736 * 359.97438 * 3 2 1 35 35 H 1.08989 * 109.58614 * 246.19831 * 8 7 5 36 36 H 1.09001 * 109.58402 * 6.62799 * 8 7 5 37 37 H 1.09004 * 109.63889 * 294.86721 * 9 8 7 38 38 H 1.08999 * 109.45967 * 174.74207 * 9 8 7 39 39 H 1.08997 * 109.46093 * 178.48512 * 10 9 8 40 40 H 1.08997 * 109.44614 * 58.52263 * 10 9 8 41 41 H 1.09004 * 109.49803 * 301.41462 * 11 10 9 42 42 H 1.08992 * 109.52722 * 181.33140 * 11 10 9 43 43 H 1.09005 * 110.71917 * 336.75282 * 16 14 12 44 44 H 1.09004 * 110.71890 * 100.02717 * 16 14 12 45 45 H 1.09000 * 111.00334 * 277.42663 * 17 16 14 46 46 H 1.09000 * 111.00496 * 153.57610 * 17 16 14 47 47 H 1.08998 * 110.36422 * 204.15086 * 18 17 16 48 48 H 1.08995 * 110.37011 * 81.82569 * 18 17 16 49 49 H 0.96999 * 120.00077 * 179.97438 * 23 22 20 50 50 H 1.07997 * 120.50529 * 179.71950 * 28 4 3 51 51 H 1.07995 * 119.54763 * 180.02562 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2021 0.0000 4 6 3.5864 1.1886 0.0005 5 6 4.3598 2.4521 0.0000 6 8 3.9590 3.4102 0.6310 7 7 5.5082 2.5390 -0.7002 8 6 6.0278 1.3765 -1.4333 9 6 6.2707 1.7883 -2.8932 10 6 7.1881 3.0129 -2.9259 11 6 6.5106 4.1794 -2.2032 12 6 6.2674 3.7963 -0.7399 13 1 7.2234 3.6620 -0.2337 14 6 5.4672 4.9008 -0.0468 15 1 5.0783 4.5357 0.9038 16 6 4.3041 5.3545 -0.9539 17 6 4.2628 6.8885 -0.7250 18 6 5.7672 7.2187 -0.5588 19 7 6.3257 6.0724 0.1811 20 6 7.4564 6.0952 0.9532 21 1 7.6543 5.2898 1.6448 22 6 8.3482 7.1537 0.8469 23 7 8.1067 8.1357 0.0043 24 14 9.8902 7.1852 1.9007 25 1 10.9963 6.5055 1.1797 26 1 10.2716 8.5934 2.1779 27 1 9.6286 6.4817 3.1821 28 6 4.2344 -0.0506 0.0005 29 6 3.4741 -1.2039 -0.0006 30 7 2.1571 -1.1465 -0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6493 2.1378 -0.0004 35 1 6.9645 1.0490 -0.9824 36 1 5.2995 0.5663 -1.3971 37 1 5.3204 2.0329 -3.3678 38 1 6.7436 0.9651 -3.4288 39 1 7.3846 3.2919 -3.9611 40 1 8.1287 2.7750 -2.4292 41 1 5.5580 4.4014 -2.6842 42 1 7.1539 5.0581 -2.2470 43 1 4.5177 5.1260 -1.9981 44 1 3.3679 4.8925 -0.6406 45 1 3.7067 7.1336 0.1799 46 1 3.8435 7.4016 -1.5904 47 1 5.8928 8.1375 0.0140 48 1 6.2455 7.3102 -1.5340 49 1 8.7297 8.8755 -0.0697 50 1 5.3130 -0.1052 -0.0036 51 1 3.9654 -2.1656 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025282332.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:36 Heat of formation + Delta-G solvation = 72.539563 kcal Electronic energy + Delta-G solvation = -32043.852356 eV Core-core repulsion = 28138.607179 eV Total energy + Delta-G solvation = -3905.245177 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.16205 -39.85383 -37.36639 -36.78259 -33.85283 -32.70579 -32.46620 -32.22652 -30.91380 -29.21162 -28.00438 -27.15042 -25.31716 -24.37365 -24.21352 -22.82605 -22.61498 -20.92140 -20.05172 -19.71474 -18.61731 -17.34283 -16.63328 -16.58360 -16.11795 -15.41497 -15.25968 -15.21881 -14.72880 -14.51985 -14.42309 -14.16148 -13.83769 -13.71822 -13.54859 -13.15624 -13.00171 -12.90838 -12.65199 -12.48985 -12.06423 -12.03874 -11.74190 -11.56040 -11.40895 -11.26831 -10.95792 -10.86350 -10.69515 -10.60144 -10.33971 -10.02632 -10.00700 -9.98210 -9.81024 -9.61658 -9.49557 -9.47126 -9.10222 -8.68676 -8.46029 -8.12066 -6.56606 -5.67094 -3.00539 0.68338 0.85856 2.83911 3.07999 3.41181 3.47530 3.49004 3.59259 4.04013 4.29155 4.52985 4.55994 4.70865 4.82151 4.83793 4.95890 5.06548 5.20424 5.22498 5.34751 5.34897 5.43915 5.47922 5.50981 5.52165 5.67152 5.69522 5.77798 5.79881 5.85488 5.88488 5.90551 5.99580 6.05801 6.11868 6.19352 6.34606 6.38974 6.42805 6.52844 6.56721 6.72959 6.81172 6.94544 6.96698 7.04908 7.54129 7.65257 7.67625 7.71710 7.74149 7.89537 8.32991 8.47204 9.29698 9.92212 10.63696 11.44805 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.003462 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.831592 B = 8086.344311 C = 8468.692804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.124 3.876 3 C -0.122 4.122 4 C -0.070 4.070 5 C 0.546 3.454 6 O -0.500 6.500 7 N -0.590 5.590 8 C 0.081 3.919 9 C -0.131 4.131 10 C -0.121 4.121 11 C -0.129 4.129 12 C 0.136 3.864 13 H 0.078 0.922 14 C 0.141 3.859 15 H 0.102 0.898 16 C -0.126 4.126 17 C -0.149 4.149 18 C 0.175 3.825 19 N -0.594 5.594 20 C -0.222 4.222 21 H 0.071 0.929 22 C -0.005 4.005 23 N -0.917 5.917 24 Si 0.904 3.096 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C -0.163 4.163 29 C 0.099 3.901 30 N -0.477 5.477 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.065 0.935 48 H 0.021 0.979 49 H 0.251 0.749 50 H 0.149 0.851 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.987 -17.722 -5.880 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.014 4.014 3 C -0.142 4.142 4 C -0.081 4.081 5 C 0.333 3.667 6 O -0.377 6.377 7 N -0.323 5.323 8 C -0.042 4.042 9 C -0.170 4.170 10 C -0.159 4.159 11 C -0.167 4.167 12 C 0.032 3.968 13 H 0.096 0.904 14 C 0.034 3.966 15 H 0.118 0.882 16 C -0.163 4.163 17 C -0.188 4.188 18 C 0.050 3.950 19 N -0.319 5.319 20 C -0.351 4.351 21 H 0.089 0.911 22 C -0.202 4.202 23 N -0.564 5.564 24 Si 0.735 3.265 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.183 4.183 29 C -0.058 4.058 30 N -0.188 5.188 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.162 0.838 35 H 0.089 0.911 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.039 0.961 49 H 0.061 0.939 50 H 0.167 0.833 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.468 -17.777 -5.495 21.350 hybrid contribution 1.776 0.767 0.282 1.955 sum -8.693 -17.010 -5.213 19.801 Atomic orbital electron populations 1.20729 0.88422 1.03721 1.03235 1.21278 0.97223 0.87865 0.95014 1.22065 0.93173 0.99982 0.98996 1.20633 0.94591 0.94323 0.98542 1.18254 0.81142 0.86771 0.80486 1.90737 1.68233 1.35801 1.42902 1.48229 1.22564 1.13225 1.48287 1.22537 1.00042 0.89132 0.92477 1.21974 1.00539 0.98679 0.95763 1.21559 0.98528 0.95247 1.00537 1.22075 1.01170 0.98319 0.95118 1.22346 0.95940 0.82030 0.96463 0.90428 1.22285 0.88861 0.86600 0.98836 0.88169 1.22858 0.98596 0.96148 0.98746 1.22989 1.00540 0.95678 0.99544 1.21350 0.86282 0.91919 0.95410 1.44702 1.27701 1.04244 1.55247 1.18946 0.95964 1.06338 1.13852 0.91139 1.24874 0.98212 0.98023 0.99072 1.69949 1.36781 1.10948 1.38709 0.86232 0.83629 0.76799 0.79822 1.21720 1.21780 1.20736 1.22612 1.02116 0.92604 1.00977 1.22706 0.89221 0.98286 0.95601 1.67377 1.10276 1.29465 1.11678 0.90268 0.90350 0.90401 0.83835 0.91097 0.88444 0.91789 0.91260 0.92214 0.91999 0.91386 0.89545 0.92155 0.91785 0.92645 0.93117 0.91654 0.96124 0.93876 0.83325 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.17 36.01 0.37 -0.43 16 2 C 0.12 1.32 6.78 -82.63 -0.56 0.76 16 3 C -0.12 -1.43 9.37 -39.02 -0.37 -1.80 16 4 C -0.07 -0.88 5.43 -104.65 -0.57 -1.45 16 5 C 0.55 8.57 7.05 -12.19 -0.09 8.49 16 6 O -0.50 -9.54 10.53 5.35 0.06 -9.48 16 7 N -0.59 -8.82 2.96 -165.94 -0.49 -9.31 16 8 C 0.08 0.89 5.04 -3.48 -0.02 0.87 16 9 C -0.13 -1.41 6.10 -26.38 -0.16 -1.57 16 10 C -0.12 -1.61 5.88 -26.69 -0.16 -1.77 16 11 C -0.13 -2.20 4.91 -26.61 -0.13 -2.33 16 12 C 0.14 2.51 2.77 -67.60 -0.19 2.32 16 13 H 0.08 1.61 7.66 -51.93 -0.40 1.22 16 14 C 0.14 3.04 2.29 -66.96 -0.15 2.88 16 15 H 0.10 2.42 5.08 -56.32 -0.29 2.13 16 16 C -0.13 -2.46 5.43 -24.90 -0.14 -2.60 16 17 C -0.15 -3.08 7.08 -24.58 -0.17 -3.25 16 18 C 0.18 4.37 5.40 -2.53 -0.01 4.36 16 19 N -0.59 -15.19 3.05 -162.58 -0.50 -15.68 16 20 C -0.22 -6.16 9.59 -15.06 -0.14 -6.31 16 21 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.15 5.47 -17.43 -0.10 -0.24 16 23 N -0.92 -26.85 10.60 55.49 0.59 -26.26 16 24 Si 0.90 22.18 29.55 -169.99 -5.02 17.15 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 C -0.16 -1.64 7.50 -39.02 -0.29 -1.93 16 29 C 0.10 0.93 11.17 -17.59 -0.20 0.73 16 30 N -0.48 -5.31 10.25 -9.52 -0.10 -5.41 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.07 0.72 8.14 -51.94 -0.42 0.30 16 36 H 0.10 0.90 3.82 -51.93 -0.20 0.70 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.15 5.35 -51.93 -0.28 0.88 16 42 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 43 H 0.06 1.12 4.82 -51.93 -0.25 0.87 16 44 H 0.06 1.23 6.39 -51.93 -0.33 0.90 16 45 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 1.82 6.96 -51.93 -0.36 1.46 16 48 H 0.02 0.55 8.05 -51.93 -0.42 0.13 16 49 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 50 H 0.15 1.23 5.85 -52.49 -0.31 0.93 16 51 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -31.96 381.40 -10.66 -42.62 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -7.87 Total: 3.89 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -3.07 Total: -3.26 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.50 Total: -56.66 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.06 Total: -9.48 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.96 -10.66 -42.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025282332.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.159 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds