Wall clock time and date at job start Wed Apr 1 2020 02:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38175 * 119.55240 * 2 1 4 4 C 1.39800 * 119.00165 * 180.02562 * 3 2 1 5 5 C 1.48142 * 120.92151 * 179.97438 * 4 3 2 6 6 O 1.21513 * 120.00382 * 41.40181 * 5 4 3 7 7 N 1.34779 * 120.00094 * 221.40108 * 5 4 3 8 8 C 1.46930 * 120.62937 * 358.07757 * 7 5 4 9 9 C 1.53184 * 108.77396 * 126.38905 * 8 7 5 10 10 C 1.53044 * 109.31160 * 54.64003 * 9 8 7 11 11 C 1.53038 * 109.53733 * 298.62838 * 10 9 8 12 12 C 1.46919 * 120.63423 * 178.07792 * 7 5 4 13 13 H 1.08999 * 109.58681 * 113.82166 * 12 7 5 14 14 C 1.53004 * 109.58704 * 353.39781 * 12 7 5 15 15 H 1.09004 * 109.87252 * 327.43861 * 14 12 7 16 16 C 1.54328 * 109.88293 * 88.45253 * 14 12 7 17 17 C 1.55155 * 102.93940 * 141.61221 * 16 14 12 18 18 C 1.54905 * 101.58464 * 324.49877 * 17 16 14 19 19 N 1.47024 * 109.88210 * 206.26215 * 14 12 7 20 20 C 1.36935 * 125.64686 * 61.62085 * 19 14 12 21 21 H 1.07996 * 119.99825 * 308.56606 * 20 19 14 22 22 C 1.38813 * 119.99941 * 128.56956 * 20 19 14 23 23 N 1.31625 * 119.99973 * 163.29875 * 22 20 19 24 24 Si 1.86795 * 120.00093 * 343.30255 * 22 20 19 25 25 H 1.48492 * 109.47670 * 91.63245 * 24 22 20 26 26 H 1.48505 * 109.47101 * 211.63561 * 24 22 20 27 27 H 1.48505 * 109.47170 * 331.62881 * 24 22 20 28 28 C 1.39837 * 118.15168 * 0.24834 * 4 3 2 29 29 C 1.38124 * 119.00285 * 359.52812 * 28 4 3 30 30 N 1.31798 * 119.55165 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47147 * 89.99674 * 1 2 3 32 32 H 1.09000 * 109.46719 * 209.99624 * 1 2 3 33 33 H 1.08996 * 109.47175 * 329.99766 * 1 2 3 34 34 H 1.08003 * 120.49573 * 0.02562 * 3 2 1 35 35 H 1.09006 * 109.58269 * 6.60800 * 8 7 5 36 36 H 1.08993 * 109.58716 * 246.18480 * 8 7 5 37 37 H 1.09000 * 109.50232 * 294.68772 * 9 8 7 38 38 H 1.09003 * 109.52117 * 174.60347 * 9 8 7 39 39 H 1.09002 * 109.45636 * 178.61421 * 10 9 8 40 40 H 1.08999 * 109.44729 * 58.64620 * 10 9 8 41 41 H 1.09001 * 109.49956 * 181.31593 * 11 10 9 42 42 H 1.08998 * 109.50112 * 301.41728 * 11 10 9 43 43 H 1.09003 * 110.71634 * 259.97488 * 16 14 12 44 44 H 1.08996 * 110.71818 * 23.07416 * 16 14 12 45 45 H 1.09002 * 111.00534 * 82.57188 * 17 16 14 46 46 H 1.09000 * 111.00370 * 206.42486 * 17 16 14 47 47 H 1.08998 * 110.37171 * 155.84982 * 18 17 16 48 48 H 1.09002 * 110.36604 * 278.06355 * 18 17 16 49 49 H 0.97001 * 119.99906 * 180.02562 * 23 22 20 50 50 H 1.07995 * 120.49301 * 179.73062 * 28 4 3 51 51 H 1.08001 * 119.55166 * 180.22621 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 -0.0005 5 6 4.3599 2.4520 -0.0011 6 8 4.0042 3.3825 0.6947 7 7 5.4581 2.5695 -0.7735 8 6 5.9248 1.4393 -1.5882 9 6 6.0707 1.9053 -3.0401 10 6 6.9824 3.1335 -3.0883 11 6 6.3543 4.2693 -2.2775 12 6 6.2115 3.8301 -0.8169 13 1 7.1997 3.6804 -0.3821 14 6 5.4590 4.9047 -0.0294 15 1 4.3846 4.7401 -0.1114 16 6 5.8846 4.8634 1.4535 17 6 5.9299 6.3644 1.8438 18 6 6.4443 7.0112 0.5336 19 7 5.8047 6.2372 -0.5458 20 6 5.5715 6.6849 -1.8187 21 1 5.8944 6.0974 -2.6654 22 6 4.9201 7.8940 -2.0208 23 7 4.9807 8.4860 -3.1948 24 14 3.9578 8.6809 -0.6265 25 1 4.8426 9.6069 0.1248 26 1 2.8082 9.4378 -1.1840 27 1 3.4573 7.6233 0.2881 28 6 4.2343 -0.0507 -0.0064 29 6 3.4741 -1.2039 -0.0015 30 7 2.1570 -1.1465 -0.0005 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 1.6493 2.1378 0.0004 35 1 5.1994 0.6274 -1.5361 36 1 6.8895 1.0946 -1.2162 37 1 5.0901 2.1642 -3.4395 38 1 6.5070 1.1047 -3.6375 39 1 7.1077 3.4523 -4.1232 40 1 7.9549 2.8804 -2.6660 41 1 6.9927 5.1512 -2.3315 42 1 5.3710 4.5060 -2.6840 43 1 5.1453 4.3313 2.0521 44 1 6.8676 4.4046 1.5599 45 1 4.9357 6.7324 2.0971 46 1 6.6281 6.5339 2.6635 47 1 6.1407 8.0567 0.4819 48 1 7.5294 6.9284 0.4703 49 1 4.5258 9.3310 -3.3359 50 1 5.3129 -0.1051 -0.0114 51 1 3.9653 -2.1657 -0.0022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025282343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:40 Heat of formation + Delta-G solvation = 79.056000 kcal Electronic energy + Delta-G solvation = -32221.520714 eV Core-core repulsion = 28316.558111 eV Total energy + Delta-G solvation = -3904.962603 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.12099 -39.84422 -37.47456 -36.91687 -33.77612 -32.74710 -32.63728 -32.11477 -31.21148 -29.70420 -27.99504 -27.41934 -25.35674 -24.46254 -24.04942 -22.79344 -22.36374 -20.97405 -20.10790 -19.54255 -19.15789 -17.45916 -16.71035 -16.57181 -16.18566 -15.71905 -15.49408 -15.10452 -14.77963 -14.51302 -14.38391 -14.13333 -13.68951 -13.61394 -13.48694 -13.05843 -12.89673 -12.74166 -12.62580 -12.54978 -12.38717 -12.23262 -12.06281 -11.87055 -11.41376 -11.12724 -11.04018 -10.97277 -10.87543 -10.64316 -10.34276 -10.17596 -10.01927 -10.00231 -9.78287 -9.75727 -9.64088 -9.15908 -9.09327 -8.54941 -8.39641 -8.24144 -6.33697 -5.91897 -3.53640 0.71851 0.88870 2.80696 3.08873 3.39971 3.51576 3.60789 3.65589 4.06701 4.30320 4.55994 4.61607 4.73914 4.85796 4.89191 5.04391 5.13951 5.21283 5.24112 5.27486 5.30772 5.39521 5.47918 5.53672 5.56573 5.60156 5.66998 5.70898 5.74251 5.83082 5.84039 5.91757 5.96350 6.05399 6.07362 6.23801 6.25856 6.34502 6.38285 6.43837 6.51532 6.65360 6.72002 6.75708 6.86901 7.02491 7.05634 7.23807 7.52106 7.60424 7.74244 8.14231 8.31900 8.54056 8.98255 9.72287 10.44276 11.16970 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.004036 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.680689 B = 6936.346335 C = 7551.684170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.126 3.874 3 C -0.123 4.123 4 C -0.069 4.069 5 C 0.545 3.455 6 O -0.500 6.500 7 N -0.591 5.591 8 C 0.090 3.910 9 C -0.134 4.134 10 C -0.127 4.127 11 C -0.124 4.124 12 C 0.143 3.857 13 H 0.057 0.943 14 C 0.137 3.863 15 H 0.100 0.900 16 C -0.114 4.114 17 C -0.138 4.138 18 C 0.119 3.881 19 N -0.601 5.601 20 C -0.275 4.275 21 H 0.105 0.895 22 C 0.048 3.952 23 N -0.902 5.902 24 Si 0.877 3.123 25 H -0.287 1.287 26 H -0.303 1.303 27 H -0.264 1.264 28 C -0.159 4.159 29 C 0.099 3.901 30 N -0.478 5.478 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.144 0.856 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.040 0.960 48 H 0.024 0.976 49 H 0.263 0.737 50 H 0.144 0.856 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.530 -19.234 4.921 19.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.012 4.012 3 C -0.143 4.143 4 C -0.080 4.080 5 C 0.333 3.667 6 O -0.377 6.377 7 N -0.323 5.323 8 C -0.032 4.032 9 C -0.172 4.172 10 C -0.164 4.164 11 C -0.161 4.161 12 C 0.039 3.961 13 H 0.075 0.925 14 C 0.031 3.969 15 H 0.117 0.883 16 C -0.151 4.151 17 C -0.177 4.177 18 C -0.005 4.005 19 N -0.328 5.328 20 C -0.403 4.403 21 H 0.122 0.878 22 C -0.154 4.154 23 N -0.542 5.542 24 Si 0.707 3.293 25 H -0.214 1.214 26 H -0.231 1.231 27 H -0.188 1.188 28 C -0.180 4.180 29 C -0.058 4.058 30 N -0.189 5.189 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.162 0.838 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.126 0.874 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.059 0.941 48 H 0.041 0.959 49 H 0.073 0.927 50 H 0.162 0.838 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.243 -19.296 5.091 19.995 hybrid contribution 0.202 1.325 0.604 1.470 sum -1.041 -17.971 5.695 18.880 Atomic orbital electron populations 1.20735 0.88408 1.03680 1.03333 1.21273 0.97233 0.87830 0.94873 1.22087 0.93216 1.00053 0.98972 1.20606 0.94567 0.94362 0.98476 1.18245 0.80672 0.86610 0.81205 1.90762 1.69345 1.36828 1.40771 1.48116 1.26865 1.14290 1.43070 1.22242 1.00136 0.89323 0.91535 1.21914 1.01180 0.98683 0.95407 1.21703 0.98068 0.95673 1.01005 1.22605 1.03303 0.97423 0.92785 1.22251 0.93919 0.81924 0.97972 0.92497 1.22177 0.99846 0.85207 0.89622 0.88288 1.22633 0.99555 0.95668 0.97291 1.22781 1.00510 0.96755 0.97604 1.21856 0.95197 0.95544 0.87932 1.44782 1.68119 1.10521 1.09332 1.19345 1.33034 1.05360 0.82540 0.87787 1.25909 0.96124 0.98007 0.95379 1.69819 1.43885 1.17122 1.23355 0.86800 0.80161 0.78998 0.83374 1.21380 1.23083 1.18835 1.22446 1.01838 0.92481 1.01202 1.22682 0.89239 0.98234 0.95672 1.67381 1.10257 1.29452 1.11766 0.90183 0.90359 0.90399 0.83848 0.89036 0.91392 0.91556 0.91438 0.91943 0.92766 0.87382 0.90171 0.90645 0.93341 0.92092 0.92417 0.94138 0.95857 0.92746 0.83803 0.82291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.17 36.01 0.37 -0.52 16 2 C 0.13 1.43 6.78 -82.63 -0.56 0.87 16 3 C -0.12 -1.55 9.41 -39.02 -0.37 -1.92 16 4 C -0.07 -0.90 5.30 -104.65 -0.55 -1.46 16 5 C 0.55 8.71 7.20 -12.19 -0.09 8.62 16 6 O -0.50 -9.63 10.43 5.35 0.06 -9.57 16 7 N -0.59 -8.86 2.97 -166.22 -0.49 -9.35 16 8 C 0.09 1.02 5.10 -3.71 -0.02 1.00 16 9 C -0.13 -1.59 6.08 -26.61 -0.16 -1.75 16 10 C -0.13 -1.80 5.88 -26.69 -0.16 -1.96 16 11 C -0.12 -2.28 3.27 -26.61 -0.09 -2.37 16 12 C 0.14 2.53 2.89 -67.60 -0.20 2.34 16 13 H 0.06 0.98 7.47 -51.93 -0.39 0.60 16 14 C 0.14 2.87 2.43 -66.95 -0.16 2.71 16 15 H 0.10 2.38 5.04 -56.01 -0.28 2.10 16 16 C -0.11 -2.15 5.85 -24.90 -0.15 -2.29 16 17 C -0.14 -2.68 7.08 -24.59 -0.17 -2.86 16 18 C 0.12 2.66 6.29 -2.53 -0.02 2.65 16 19 N -0.60 -14.37 2.13 -162.57 -0.35 -14.72 16 20 C -0.28 -7.42 8.26 -15.06 -0.12 -7.55 16 21 H 0.11 2.85 4.11 -52.49 -0.22 2.63 16 22 C 0.05 1.37 5.46 -17.43 -0.10 1.28 16 23 N -0.90 -27.15 13.97 55.49 0.78 -26.38 16 24 Si 0.88 23.04 25.67 -169.99 -4.36 18.67 16 25 H -0.29 -7.41 6.79 56.52 0.38 -7.02 16 26 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 27 H -0.26 -7.02 7.11 56.52 0.40 -6.62 16 28 C -0.16 -1.62 7.45 -39.03 -0.29 -1.91 16 29 C 0.10 0.95 11.17 -17.59 -0.20 0.75 16 30 N -0.48 -5.51 10.25 -9.52 -0.10 -5.61 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 35 H 0.09 0.89 4.11 -51.93 -0.21 0.68 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.11 2.31 5.74 -51.93 -0.30 2.01 16 42 H 0.08 1.73 6.81 -51.93 -0.35 1.37 16 43 H 0.08 1.45 6.30 -51.93 -0.33 1.12 16 44 H 0.05 0.84 7.44 -51.93 -0.39 0.45 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.04 0.97 5.01 -51.93 -0.26 0.71 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 50 H 0.14 1.16 6.31 -52.49 -0.33 0.83 16 51 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -32.05 374.77 -9.55 -41.61 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.70 Total: 4.08 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -3.03 Total: -4.38 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.16 Total: -56.06 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.06 Total: -9.57 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.36 Total: 18.67 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.05 -9.55 -41.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025282343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.663 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds