Wall clock time and date at job start Wed Apr 1 2020 02:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38175 * 119.55240 * 2 1 4 4 C 1.39800 * 119.00165 * 180.02562 * 3 2 1 5 5 C 1.48142 * 120.92151 * 179.97438 * 4 3 2 6 6 O 1.21513 * 120.00382 * 41.40181 * 5 4 3 7 7 N 1.34779 * 120.00094 * 221.40108 * 5 4 3 8 8 C 1.46930 * 120.62937 * 358.07757 * 7 5 4 9 9 C 1.53184 * 108.77396 * 126.38905 * 8 7 5 10 10 C 1.53044 * 109.31160 * 54.64003 * 9 8 7 11 11 C 1.53038 * 109.53733 * 298.62838 * 10 9 8 12 12 C 1.46919 * 120.63423 * 178.07792 * 7 5 4 13 13 H 1.08999 * 109.58681 * 113.82166 * 12 7 5 14 14 C 1.53004 * 109.58704 * 353.39781 * 12 7 5 15 15 H 1.09004 * 109.87252 * 327.43861 * 14 12 7 16 16 C 1.54328 * 109.88293 * 88.45253 * 14 12 7 17 17 C 1.55155 * 102.93940 * 141.61221 * 16 14 12 18 18 C 1.54905 * 101.58464 * 324.49877 * 17 16 14 19 19 N 1.47024 * 109.88210 * 206.26215 * 14 12 7 20 20 C 1.36935 * 125.64686 * 61.62085 * 19 14 12 21 21 H 1.07996 * 119.99825 * 308.56606 * 20 19 14 22 22 C 1.38813 * 119.99941 * 128.56956 * 20 19 14 23 23 N 1.31625 * 119.99973 * 163.29875 * 22 20 19 24 24 Si 1.86795 * 120.00093 * 343.30255 * 22 20 19 25 25 H 1.48492 * 109.47670 * 91.63245 * 24 22 20 26 26 H 1.48505 * 109.47101 * 211.63561 * 24 22 20 27 27 H 1.48505 * 109.47170 * 331.62881 * 24 22 20 28 28 C 1.39837 * 118.15168 * 0.24834 * 4 3 2 29 29 C 1.38124 * 119.00285 * 359.52812 * 28 4 3 30 30 N 1.31798 * 119.55165 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47147 * 89.99674 * 1 2 3 32 32 H 1.09000 * 109.46719 * 209.99624 * 1 2 3 33 33 H 1.08996 * 109.47175 * 329.99766 * 1 2 3 34 34 H 1.08003 * 120.49573 * 0.02562 * 3 2 1 35 35 H 1.09006 * 109.58269 * 6.60800 * 8 7 5 36 36 H 1.08993 * 109.58716 * 246.18480 * 8 7 5 37 37 H 1.09000 * 109.50232 * 294.68772 * 9 8 7 38 38 H 1.09003 * 109.52117 * 174.60347 * 9 8 7 39 39 H 1.09002 * 109.45636 * 178.61421 * 10 9 8 40 40 H 1.08999 * 109.44729 * 58.64620 * 10 9 8 41 41 H 1.09001 * 109.49956 * 181.31593 * 11 10 9 42 42 H 1.08998 * 109.50112 * 301.41728 * 11 10 9 43 43 H 1.09003 * 110.71634 * 259.97488 * 16 14 12 44 44 H 1.08996 * 110.71818 * 23.07416 * 16 14 12 45 45 H 1.09002 * 111.00534 * 82.57188 * 17 16 14 46 46 H 1.09000 * 111.00370 * 206.42486 * 17 16 14 47 47 H 1.08998 * 110.37171 * 155.84982 * 18 17 16 48 48 H 1.09002 * 110.36604 * 278.06355 * 18 17 16 49 49 H 0.97001 * 119.99906 * 180.02562 * 23 22 20 50 50 H 1.07995 * 120.49301 * 179.73062 * 28 4 3 51 51 H 1.08001 * 119.55166 * 180.22621 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 -0.0005 5 6 4.3599 2.4520 -0.0011 6 8 4.0042 3.3825 0.6947 7 7 5.4581 2.5695 -0.7735 8 6 5.9248 1.4393 -1.5882 9 6 6.0707 1.9053 -3.0401 10 6 6.9824 3.1335 -3.0883 11 6 6.3543 4.2693 -2.2775 12 6 6.2115 3.8301 -0.8169 13 1 7.1997 3.6804 -0.3821 14 6 5.4590 4.9047 -0.0294 15 1 4.3846 4.7401 -0.1114 16 6 5.8846 4.8634 1.4535 17 6 5.9299 6.3644 1.8438 18 6 6.4443 7.0112 0.5336 19 7 5.8047 6.2372 -0.5458 20 6 5.5715 6.6849 -1.8187 21 1 5.8944 6.0974 -2.6654 22 6 4.9201 7.8940 -2.0208 23 7 4.9807 8.4860 -3.1948 24 14 3.9578 8.6809 -0.6265 25 1 4.8426 9.6069 0.1248 26 1 2.8082 9.4378 -1.1840 27 1 3.4573 7.6233 0.2881 28 6 4.2343 -0.0507 -0.0064 29 6 3.4741 -1.2039 -0.0015 30 7 2.1570 -1.1465 -0.0005 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 1.6493 2.1378 0.0004 35 1 5.1994 0.6274 -1.5361 36 1 6.8895 1.0946 -1.2162 37 1 5.0901 2.1642 -3.4395 38 1 6.5070 1.1047 -3.6375 39 1 7.1077 3.4523 -4.1232 40 1 7.9549 2.8804 -2.6660 41 1 6.9927 5.1512 -2.3315 42 1 5.3710 4.5060 -2.6840 43 1 5.1453 4.3313 2.0521 44 1 6.8676 4.4046 1.5599 45 1 4.9357 6.7324 2.0971 46 1 6.6281 6.5339 2.6635 47 1 6.1407 8.0567 0.4819 48 1 7.5294 6.9284 0.4703 49 1 4.5258 9.3310 -3.3359 50 1 5.3129 -0.1051 -0.0114 51 1 3.9653 -2.1657 -0.0022 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025282343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:39 Heat of formation + Delta-G solvation = 59.412109 kcal Electronic energy + Delta-G solvation = -32222.372537 eV Core-core repulsion = 28316.558111 eV Total energy + Delta-G solvation = -3905.814426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.25208 -40.90882 -38.99558 -38.22778 -34.83690 -34.67192 -33.53021 -33.36379 -32.56723 -31.52952 -29.07080 -28.54717 -26.66768 -26.23670 -25.14934 -23.75079 -23.68292 -22.34241 -21.64080 -21.12846 -20.35811 -19.07238 -17.94769 -17.71334 -17.57196 -16.92538 -16.73242 -16.30701 -16.27904 -15.71735 -15.52770 -15.34875 -15.13702 -14.89141 -14.66729 -14.37183 -14.25170 -14.09275 -14.04474 -13.86260 -13.70099 -13.34332 -13.15199 -13.11313 -12.98077 -12.77861 -12.70478 -12.46183 -12.22670 -12.15202 -11.96770 -11.74543 -11.59379 -11.40882 -11.23993 -10.91139 -10.84845 -10.69510 -10.61828 -9.98835 -9.84418 -9.53459 -8.34811 -8.08369 -5.70847 -0.20727 0.06513 1.24307 1.32425 1.48594 1.63494 1.95301 2.42725 2.74041 3.07046 3.26770 3.35686 3.51891 3.78364 3.84814 3.93011 3.98081 3.99953 4.03861 4.08546 4.12184 4.21272 4.35404 4.41140 4.43852 4.46963 4.56241 4.62839 4.72582 4.75053 4.76144 4.78009 4.83329 4.90204 4.96116 4.97697 5.04623 5.06300 5.11905 5.12590 5.15880 5.22628 5.32198 5.37302 5.39753 5.56735 5.64526 5.67005 5.87375 6.05317 6.36466 6.41552 6.92976 6.95503 7.16754 7.57840 8.36628 8.98610 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.004036 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.680689 B = 6936.346335 C = 7551.684170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.122 3.878 3 C -0.143 4.143 4 C -0.084 4.084 5 C 0.540 3.460 6 O -0.543 6.543 7 N -0.590 5.590 8 C 0.087 3.913 9 C -0.129 4.129 10 C -0.120 4.120 11 C -0.112 4.112 12 C 0.152 3.848 13 H 0.074 0.926 14 C 0.132 3.868 15 H 0.068 0.932 16 C -0.101 4.101 17 C -0.130 4.130 18 C 0.113 3.887 19 N -0.616 5.616 20 C -0.252 4.252 21 H 0.094 0.906 22 C -0.005 4.005 23 N -0.944 5.944 24 Si 0.926 3.074 25 H -0.279 1.279 26 H -0.308 1.308 27 H -0.274 1.274 28 C -0.149 4.149 29 C 0.106 3.894 30 N -0.492 5.492 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.043 0.957 38 H 0.105 0.895 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.043 0.957 46 H 0.095 0.905 47 H 0.019 0.981 48 H 0.038 0.962 49 H 0.261 0.739 50 H 0.173 0.827 51 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.130 -23.235 6.249 24.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.015 4.015 3 C -0.164 4.164 4 C -0.095 4.095 5 C 0.329 3.671 6 O -0.422 6.422 7 N -0.322 5.322 8 C -0.034 4.034 9 C -0.167 4.167 10 C -0.158 4.158 11 C -0.151 4.151 12 C 0.048 3.952 13 H 0.092 0.908 14 C 0.028 3.972 15 H 0.085 0.915 16 C -0.139 4.139 17 C -0.169 4.169 18 C -0.011 4.011 19 N -0.344 5.344 20 C -0.381 4.381 21 H 0.111 0.889 22 C -0.203 4.203 23 N -0.588 5.588 24 Si 0.756 3.244 25 H -0.206 1.206 26 H -0.236 1.236 27 H -0.199 1.199 28 C -0.169 4.169 29 C -0.051 4.051 30 N -0.202 5.202 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.147 0.853 35 H 0.130 0.870 36 H 0.120 0.880 37 H 0.062 0.938 38 H 0.124 0.876 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.114 0.886 47 H 0.037 0.963 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.190 0.810 51 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.421 -23.338 6.431 24.212 hybrid contribution -0.289 2.437 0.181 2.460 sum 0.132 -20.902 6.611 21.923 Atomic orbital electron populations 1.20802 0.86867 1.04333 1.04097 1.21558 0.98394 0.87293 0.94279 1.22091 0.93499 1.00221 1.00558 1.20440 0.94463 0.94135 1.00507 1.18717 0.80608 0.87210 0.80525 1.90734 1.70167 1.38651 1.42697 1.48138 1.26463 1.14258 1.43316 1.22592 1.02262 0.88240 0.90293 1.21903 0.99640 0.98532 0.96626 1.21630 0.99250 0.94992 0.99929 1.22224 1.00366 0.98190 0.94276 1.21840 0.94311 0.82465 0.96571 0.90820 1.22188 0.98797 0.84468 0.91760 0.91539 1.22539 1.00614 0.95389 0.95334 1.22751 1.00401 0.96567 0.97141 1.21952 0.95943 0.94391 0.88820 1.44945 1.68613 1.12121 1.08705 1.19498 1.30372 1.04240 0.84014 0.88879 1.26415 0.97821 0.99294 0.96754 1.69902 1.46103 1.17921 1.24861 0.86014 0.79111 0.78045 0.81275 1.20581 1.23645 1.19905 1.22702 1.03216 0.91096 0.99838 1.23358 0.88609 0.99635 0.93471 1.67488 1.11445 1.29185 1.12108 0.89290 0.89541 0.89900 0.85343 0.87038 0.88028 0.93789 0.87628 0.92409 0.90479 0.90939 0.94647 0.90819 0.90940 0.93798 0.88614 0.96322 0.94388 0.93017 0.80957 0.78357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 10.17 71.24 0.72 -0.93 16 2 C 0.12 2.62 6.78 42.55 0.29 2.90 16 3 C -0.14 -3.61 9.41 22.63 0.21 -3.40 16 4 C -0.08 -2.09 5.30 -19.88 -0.11 -2.20 16 5 C 0.54 16.98 7.20 86.87 0.63 17.60 16 6 O -0.54 -21.39 10.43 -3.76 -0.04 -21.43 16 7 N -0.59 -16.73 2.97 -798.09 -2.37 -19.10 16 8 C 0.09 1.61 5.10 86.36 0.44 2.05 16 9 C -0.13 -2.70 6.08 30.67 0.19 -2.51 16 10 C -0.12 -3.22 5.88 30.62 0.18 -3.04 16 11 C -0.11 -4.24 3.27 30.67 0.10 -4.14 16 12 C 0.15 5.28 2.89 44.98 0.13 5.41 16 13 H 0.07 2.35 7.47 -2.39 -0.02 2.33 16 14 C 0.13 5.62 2.43 45.34 0.11 5.73 16 15 H 0.07 3.36 5.04 -67.01 -0.34 3.02 16 16 C -0.10 -3.68 5.85 31.78 0.19 -3.49 16 17 C -0.13 -4.89 7.08 31.98 0.23 -4.66 16 18 C 0.11 5.03 6.29 86.85 0.55 5.58 16 19 N -0.62 -30.21 2.13 -668.25 -1.42 -31.63 16 20 C -0.25 -14.24 8.26 84.03 0.69 -13.55 16 21 H 0.09 5.42 4.11 -2.91 -0.01 5.41 16 22 C -0.01 -0.33 5.46 84.86 0.46 0.14 16 23 N -0.94 -59.53 13.97 21.65 0.30 -59.23 16 24 Si 0.93 49.73 25.67 68.60 1.76 51.49 16 25 H -0.28 -14.46 6.79 99.48 0.68 -13.79 16 26 H -0.31 -16.63 7.11 99.48 0.71 -15.92 16 27 H -0.27 -14.96 7.11 99.48 0.71 -14.26 16 28 C -0.15 -2.46 7.45 22.63 0.17 -2.29 16 29 C 0.11 1.60 11.17 84.67 0.95 2.55 16 30 N -0.49 -9.99 10.25 -184.04 -1.89 -11.87 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 34 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 35 H 0.11 1.67 4.11 -2.38 -0.01 1.66 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.11 1.49 8.14 -2.39 -0.02 1.48 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.07 3.22 5.74 -2.39 -0.01 3.20 16 42 H 0.03 1.62 6.81 -2.39 -0.02 1.60 16 43 H 0.07 2.76 6.30 -2.39 -0.02 2.75 16 44 H 0.07 2.28 7.44 -2.39 -0.02 2.27 16 45 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 47 H 0.02 0.90 5.01 -2.39 -0.01 0.89 16 48 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 49 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 50 H 0.17 1.82 6.31 -2.91 -0.02 1.80 16 51 H 0.20 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -75.31 374.77 3.06 -72.26 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.59 Total: 17.76 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 6.13 Total: 1.76 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -5.38 Total: -121.83 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.04 Total: -21.43 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 1.76 Total: 51.49 kcal Total: -75.31 3.06 -72.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025282343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.671 kcal (2) G-P(sol) polarization free energy of solvation -75.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds