Wall clock time and date at job start Wed Apr 1 2020 02:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38228 * 120.41956 * 2 1 4 4 N 1.31849 * 120.76331 * 180.02562 * 3 2 1 5 5 C 1.31888 * 121.72332 * 0.02562 * 4 3 2 6 6 C 1.38175 * 120.76932 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.42022 * 179.97438 * 6 5 4 8 8 C 1.52994 * 109.47080 * 90.00331 * 7 6 5 9 9 C 1.50703 * 109.47497 * 180.02562 * 8 7 6 10 10 O 1.21283 * 119.99555 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00195 * 180.02562 * 9 8 7 12 12 C 1.47354 * 125.70090 * 359.97438 * 11 9 8 13 13 C 1.54656 * 105.13141 * 204.83930 * 12 11 9 14 14 H 1.08998 * 113.79546 * 199.27031 * 13 12 11 15 15 C 1.54454 * 108.63771 * 71.45245 * 13 12 11 16 16 C 1.54113 * 104.72946 * 216.45997 * 15 13 12 17 17 C 1.53723 * 106.67044 * 23.41336 * 16 15 13 18 18 H 1.09000 * 109.91105 * 239.75218 * 17 16 15 19 19 N 1.46497 * 109.91506 * 118.66372 * 17 16 15 20 20 C 1.36941 * 120.00095 * 154.88851 * 19 17 16 21 21 H 1.07995 * 120.00024 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99879 * 179.97438 * 20 19 17 23 23 N 1.31618 * 120.00172 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99823 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46924 * 60.00532 * 24 22 20 26 26 H 1.48500 * 109.46710 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47071 * 300.00065 * 24 22 20 28 28 C 1.53712 * 107.11207 * 359.13769 * 17 16 15 29 29 H 1.08990 * 113.44255 * 214.70272 * 28 17 16 30 30 C 1.47028 * 125.69927 * 179.97438 * 11 9 8 31 31 C 1.38628 * 120.41439 * 180.29751 * 2 1 3 32 32 H 1.08990 * 109.47003 * 89.99798 * 1 2 3 33 33 H 1.08996 * 109.46592 * 210.00112 * 1 2 3 34 34 H 1.09002 * 109.46935 * 329.99820 * 1 2 3 35 35 H 1.08005 * 119.61443 * 359.97438 * 3 2 1 36 36 H 1.08003 * 119.61599 * 179.97438 * 5 4 3 37 37 H 1.08997 * 109.47100 * 330.00181 * 7 6 5 38 38 H 1.09002 * 109.47210 * 210.00038 * 7 6 5 39 39 H 1.09006 * 109.47315 * 59.99739 * 8 7 6 40 40 H 1.09003 * 109.47546 * 300.00224 * 8 7 6 41 41 H 1.08999 * 110.31119 * 323.75160 * 12 11 9 42 42 H 1.08999 * 110.31042 * 85.92559 * 12 11 9 43 43 H 1.08992 * 110.38912 * 335.27490 * 15 13 12 44 44 H 1.09001 * 110.38565 * 97.54082 * 15 13 12 45 45 H 1.08999 * 110.01620 * 142.71231 * 16 15 13 46 46 H 1.08992 * 110.02182 * 264.06384 * 16 15 13 47 47 H 0.97005 * 120.00391 * 334.88808 * 19 17 16 48 48 H 0.97005 * 120.00321 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.83178 * 297.23236 * 30 11 9 50 50 H 1.08998 * 109.82693 * 58.11212 * 30 11 9 51 51 H 1.07996 * 120.79354 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2070 1.1920 0.0000 4 7 3.5255 1.1999 -0.0005 5 6 4.2257 0.0823 -0.0015 6 6 3.5948 -1.1471 -0.0026 7 6 4.4027 -2.4193 -0.0044 8 6 4.6766 -2.8514 1.4375 9 6 5.4850 -4.1233 1.4358 10 8 5.8096 -4.6340 0.3848 11 7 5.8463 -4.6937 2.6023 12 6 5.5212 -4.1836 3.9460 13 6 6.6236 -4.7507 4.8707 14 1 6.3559 -4.7476 5.9272 15 6 7.9497 -4.0211 4.5629 16 6 9.0364 -5.1035 4.7127 17 6 8.3414 -6.4583 4.5021 18 1 8.4553 -7.0764 5.3927 19 7 8.9210 -7.1417 3.3432 20 6 8.8606 -8.5068 3.2524 21 1 8.3853 -9.0795 4.0350 22 6 9.4094 -9.1543 2.1540 23 7 9.9882 -8.4562 1.2000 24 14 9.3263 -11.0163 2.0298 25 1 7.9059 -11.4494 2.0288 26 1 9.9799 -11.4580 0.7717 27 1 10.0277 -11.6216 3.1904 28 6 6.8525 -6.1689 4.2525 29 1 6.1882 -6.9283 4.6646 30 6 6.6306 -5.9289 2.7467 31 6 2.2089 -1.1955 -0.0062 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3632 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6675 2.1277 -0.0004 36 1 5.3047 0.1284 -0.0023 37 1 5.3485 -2.2483 -0.5184 38 1 3.8460 -3.2025 -0.5189 39 1 3.7307 -3.0223 1.9515 40 1 5.2333 -2.0682 1.9521 41 1 5.5452 -3.0939 3.9530 42 1 4.5416 -4.5433 4.2605 43 1 7.9408 -3.6302 3.5455 44 1 8.1139 -3.2144 5.2774 45 1 9.8115 -4.9607 3.9597 46 1 9.4730 -5.0584 5.7104 47 1 9.3476 -6.6273 2.6401 48 1 10.3720 -8.9087 0.4326 49 1 6.0832 -6.7670 2.3154 50 1 7.5916 -5.8174 2.2445 51 1 1.6888 -2.1419 -0.0107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026310584.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:51 Heat of formation + Delta-G solvation = 4.600820 kcal Electronic energy + Delta-G solvation = -29856.933592 eV Core-core repulsion = 25948.742370 eV Total energy + Delta-G solvation = -3908.191222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.66332 -40.28445 -38.43557 -35.06563 -34.74561 -33.88890 -33.22735 -30.89562 -30.72157 -29.02215 -28.33593 -27.63228 -25.78478 -24.97688 -23.50007 -23.11152 -22.74955 -21.01878 -19.80843 -18.91424 -18.74100 -17.42009 -17.27689 -16.97674 -16.89109 -15.92585 -15.31489 -15.09288 -14.79917 -14.57989 -14.42227 -13.99197 -13.78013 -13.50131 -13.33889 -13.26457 -13.17542 -13.03978 -12.99503 -12.81609 -12.46915 -12.36862 -12.28666 -12.02699 -11.67837 -11.41803 -11.19169 -11.06797 -10.76944 -10.70670 -10.58622 -10.36697 -10.29245 -10.16396 -9.91838 -9.90821 -9.69441 -9.61786 -9.53446 -9.04732 -8.87769 -8.25152 -6.96076 -5.75670 -3.05547 0.80507 0.99503 2.87942 3.23189 3.44628 3.49134 3.50591 3.52085 4.14637 4.39550 4.43898 4.56563 4.60914 4.66043 4.68680 4.72155 4.83577 4.90790 4.94385 5.01094 5.17081 5.18968 5.29293 5.32813 5.43663 5.46111 5.49889 5.55256 5.59426 5.60560 5.65513 5.70880 5.79881 5.89619 5.91671 5.97000 5.98968 6.07479 6.09177 6.12554 6.31249 6.34096 6.44727 6.54753 6.58390 6.72092 6.83556 6.86242 6.99839 7.70698 7.71004 7.84560 8.41958 8.44421 9.53026 10.09243 10.42740 11.46244 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016208 B = 0.002284 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.110434 B =12258.147101 C =13044.954543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C 0.089 3.911 4 N -0.480 5.480 5 C 0.095 3.905 6 C -0.123 4.123 7 C -0.063 4.063 8 C -0.128 4.128 9 C 0.520 3.480 10 O -0.536 6.536 11 N -0.616 5.616 12 C 0.105 3.895 13 C -0.107 4.107 14 H 0.099 0.901 15 C -0.114 4.114 16 C -0.129 4.129 17 C 0.181 3.819 18 H 0.053 0.947 19 N -0.718 5.718 20 C -0.245 4.245 21 H 0.070 0.930 22 C -0.009 4.009 23 N -0.928 5.928 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.116 4.116 29 H 0.081 0.919 30 C 0.128 3.872 31 C -0.075 4.075 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.059 0.941 50 H 0.090 0.910 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.234 18.593 4.348 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 C -0.069 4.069 4 N -0.187 5.187 5 C -0.062 4.062 6 C -0.125 4.125 7 C -0.101 4.101 8 C -0.168 4.168 9 C 0.308 3.692 10 O -0.413 6.413 11 N -0.350 5.350 12 C -0.019 4.019 13 C -0.127 4.127 14 H 0.117 0.883 15 C -0.151 4.151 16 C -0.167 4.167 17 C 0.069 3.931 18 H 0.071 0.929 19 N -0.359 5.359 20 C -0.376 4.376 21 H 0.087 0.913 22 C -0.206 4.206 23 N -0.576 5.576 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.138 4.138 29 H 0.099 0.901 30 C 0.007 3.993 31 C -0.101 4.101 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.173 0.827 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.220 0.780 48 H 0.066 0.934 49 H 0.078 0.922 50 H 0.108 0.892 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.599 18.953 3.682 25.461 hybrid contribution -0.442 -1.757 -0.272 1.832 sum -17.041 17.196 3.410 24.448 Atomic orbital electron populations 1.20727 0.90230 1.03151 1.02645 1.20948 0.97576 0.94165 1.01198 1.22649 0.90027 0.97405 0.96771 1.67687 1.08325 1.31280 1.11440 1.22720 1.00424 0.87095 0.95960 1.20972 0.94521 0.96819 1.00204 1.20296 1.00505 0.93332 0.95991 1.21606 1.00804 0.95980 0.98415 1.20170 0.80570 0.85828 0.82637 1.90757 1.55721 1.64505 1.30365 1.48663 1.54202 1.27088 1.05080 1.22234 0.98237 0.98483 0.82911 1.23231 0.94531 0.96492 0.98398 0.88268 1.22234 0.94258 0.97453 1.01192 1.22396 0.97991 0.94967 1.01371 1.20654 0.89026 0.91644 0.91740 0.92865 1.42632 1.67762 1.04167 1.21312 1.19160 1.31489 0.83012 1.03964 0.91251 1.24745 1.00960 0.97732 0.97129 1.69641 1.42859 1.34322 1.10754 0.86309 0.77512 0.85749 0.76825 1.21292 1.21732 1.21319 1.23558 1.01441 0.94915 0.93925 0.90069 1.21918 0.96520 0.84296 0.96555 1.21451 0.93486 0.98299 0.96873 0.90878 0.91260 0.91166 0.83048 0.82713 0.89512 0.89814 0.89265 0.89051 0.91233 0.91955 0.91689 0.92327 0.91333 0.92147 0.78014 0.93373 0.92225 0.89195 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.04 36.01 0.36 -0.20 16 2 C -0.14 -1.08 5.90 -104.48 -0.62 -1.70 16 3 C 0.09 0.78 10.86 -17.55 -0.19 0.59 16 4 N -0.48 -5.23 10.36 -13.25 -0.14 -5.37 16 5 C 0.09 0.96 10.86 -17.55 -0.19 0.77 16 6 C -0.12 -1.18 5.15 -104.48 -0.54 -1.72 16 7 C -0.06 -0.66 4.66 -27.89 -0.13 -0.79 16 8 C -0.13 -1.36 4.68 -27.88 -0.13 -1.49 16 9 C 0.52 8.17 7.85 -10.98 -0.09 8.09 16 10 O -0.54 -10.99 16.31 5.56 0.09 -10.89 16 11 N -0.62 -9.44 2.84 -170.88 -0.48 -9.92 16 12 C 0.10 1.19 5.93 -2.70 -0.02 1.17 16 13 C -0.11 -1.30 4.28 -87.17 -0.37 -1.68 16 14 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.11 -1.47 5.85 -25.39 -0.15 -1.62 16 16 C -0.13 -2.01 6.55 -25.77 -0.17 -2.18 16 17 C 0.18 3.34 3.24 -67.19 -0.22 3.13 16 18 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 19 N -0.72 -17.19 3.61 -52.70 -0.19 -17.38 16 20 C -0.25 -6.60 9.95 -15.06 -0.15 -6.75 16 21 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 23 N -0.93 -28.10 13.06 55.49 0.72 -27.37 16 24 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C -0.12 -1.89 3.98 -87.86 -0.35 -2.24 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 30 C 0.13 2.43 5.41 -3.18 -0.02 2.41 16 31 C -0.08 -0.65 9.55 -39.27 -0.37 -1.02 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 34 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 35 H 0.15 0.96 8.06 -52.48 -0.42 0.54 16 36 H 0.16 1.35 8.06 -52.48 -0.42 0.92 16 37 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 38 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.84 7.84 -51.93 -0.41 0.43 16 41 H 0.07 0.64 7.41 -51.93 -0.38 0.26 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.94 7.29 -51.93 -0.38 0.56 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.19 7.61 -51.93 -0.40 0.80 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.38 10.05 6.77 -40.82 -0.28 9.77 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 50 H 0.09 2.03 6.11 -51.93 -0.32 1.72 16 51 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 406.15 15.07 6.12 6.12 Total: -1.00 -33.26 406.15 -10.79 -44.05 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -8.45 Total: 8.93 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -3.43 Total: -5.57 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: -0.09 Total: -60.05 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.26 -10.79 -44.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026310584.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.648 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds