Wall clock time and date at job start Wed Apr 1 2020 02:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 120.41767 * 2 1 4 4 N 1.31853 * 120.76240 * 179.97438 * 3 2 1 5 5 C 1.31893 * 121.72470 * 0.02562 * 4 3 2 6 6 C 1.38181 * 120.76346 * 0.02796 * 5 4 3 7 7 C 1.50701 * 120.41474 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47143 * 90.00235 * 7 6 5 9 9 C 1.50693 * 109.47560 * 180.02562 * 8 7 6 10 10 O 1.21290 * 120.00010 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00297 * 180.02562 * 9 8 7 12 12 C 1.48345 * 128.19654 * 359.67333 * 11 9 8 13 13 C 1.54835 * 104.12775 * 138.23969 * 12 11 9 14 14 H 1.08997 * 112.85733 * 263.44462 * 13 12 11 15 15 C 1.54148 * 108.66645 * 138.71949 * 13 12 11 16 16 C 1.54837 * 104.34647 * 224.14519 * 15 13 12 17 17 C 1.54835 * 102.73402 * 38.22803 * 16 15 13 18 18 H 1.08998 * 110.56603 * 80.54445 * 17 16 15 19 19 N 1.46501 * 110.45738 * 203.05605 * 17 16 15 20 20 C 1.36935 * 120.00072 * 269.92810 * 19 17 16 21 21 H 1.07995 * 119.99751 * 359.97438 * 20 19 17 22 22 C 1.38807 * 119.99948 * 180.02562 * 20 19 17 23 23 N 1.31625 * 120.00216 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00144 * 359.97438 * 22 20 19 25 25 H 1.48511 * 109.46915 * 90.00577 * 24 22 20 26 26 H 1.48503 * 109.47448 * 210.00123 * 24 22 20 27 27 H 1.48497 * 109.47153 * 330.00471 * 24 22 20 28 28 C 1.54144 * 104.34682 * 321.77270 * 17 16 15 29 29 H 1.09003 * 111.89730 * 260.14710 * 28 17 16 30 30 C 1.48338 * 128.19883 * 179.97438 * 11 9 8 31 31 C 1.38627 * 120.42040 * 179.72289 * 2 1 3 32 32 H 1.09002 * 109.47152 * 90.00190 * 1 2 3 33 33 H 1.09001 * 109.46980 * 330.00290 * 1 2 3 34 34 H 1.09004 * 109.47113 * 210.00271 * 1 2 3 35 35 H 1.07997 * 119.61742 * 359.97438 * 3 2 1 36 36 H 1.07998 * 119.61329 * 180.02562 * 5 4 3 37 37 H 1.09002 * 109.47267 * 210.00146 * 7 6 5 38 38 H 1.08998 * 109.47469 * 330.00549 * 7 6 5 39 39 H 1.09002 * 109.46967 * 300.00095 * 8 7 6 40 40 H 1.09000 * 109.47179 * 59.99677 * 8 7 6 41 41 H 1.09004 * 110.46615 * 256.97866 * 12 11 9 42 42 H 1.08992 * 110.46372 * 19.56254 * 12 11 9 43 43 H 1.08994 * 110.45433 * 105.42926 * 15 13 12 44 44 H 1.09001 * 110.56196 * 342.91592 * 15 13 12 45 45 H 1.09000 * 110.75600 * 279.91517 * 16 15 13 46 46 H 1.08998 * 110.91759 * 156.61343 * 16 15 13 47 47 H 0.96998 * 119.99768 * 89.92643 * 19 17 16 48 48 H 0.96990 * 120.00171 * 180.02562 * 23 22 20 49 49 H 1.09003 * 110.46688 * 340.44056 * 30 11 9 50 50 H 1.09001 * 110.46671 * 103.02182 * 30 11 9 51 51 H 1.07998 * 120.78821 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.2000 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1471 -0.0006 7 6 4.4027 -2.4192 -0.0011 8 6 4.6754 -2.8508 1.4412 9 6 5.4838 -4.1225 1.4408 10 8 5.8094 -4.6338 0.3902 11 7 5.8442 -4.6924 2.6077 12 6 5.5530 -4.2252 3.9852 13 6 5.1863 -5.5186 4.7533 14 1 4.1107 -5.6849 4.8133 15 6 5.8386 -5.4654 6.1490 16 6 6.4310 -6.8817 6.3499 17 6 6.9627 -7.2327 4.9387 18 1 7.9322 -6.7650 4.7676 19 7 7.0602 -8.6852 4.7749 20 6 8.2180 -9.3357 5.1088 21 1 9.0593 -8.7779 5.4925 22 6 8.3105 -10.7119 4.9531 23 7 9.4232 -11.3373 5.2745 24 14 6.8555 -11.6767 4.2887 25 1 6.9465 -11.7528 2.8083 26 1 6.8703 -13.0487 4.8566 27 1 5.5930 -10.9956 4.6727 28 6 5.9070 -6.6517 3.9774 29 1 5.2216 -7.4180 3.6152 30 6 6.6312 -5.9319 2.8187 31 6 2.2090 -1.1954 0.0058 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 0.8900 0.5138 34 1 -0.3633 -0.8900 0.5139 35 1 1.6675 2.1276 -0.0004 36 1 5.3047 0.1286 0.0014 37 1 3.8464 -3.2027 -0.5157 38 1 5.3490 -2.2485 -0.5143 39 1 5.2317 -2.0673 1.9558 40 1 3.7292 -3.0215 1.9545 41 1 6.4343 -3.7564 4.4230 42 1 4.7127 -3.5311 3.9825 43 1 5.0893 -5.2540 6.9118 44 1 6.6286 -4.7148 6.1739 45 1 5.6563 -7.5845 6.6567 46 1 7.2439 -6.8641 7.0758 47 1 6.3046 -9.1862 4.4299 48 1 9.4880 -12.2989 5.1653 49 1 6.6191 -6.5487 1.9201 50 1 7.6555 -5.6895 3.1018 51 1 1.6888 -2.1419 0.0108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026310585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:55 Heat of formation + Delta-G solvation = 2.726810 kcal Electronic energy + Delta-G solvation = -29216.806475 eV Core-core repulsion = 25308.533990 eV Total energy + Delta-G solvation = -3908.272485 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.77770 -40.31893 -38.66156 -35.36100 -34.92595 -33.99402 -33.42708 -31.26600 -30.96503 -29.39485 -28.65905 -27.73426 -25.80127 -25.02864 -23.70396 -23.14993 -22.46921 -21.18641 -20.30844 -19.30099 -19.02145 -17.55029 -17.40462 -17.18225 -17.07070 -16.03294 -15.77571 -15.46696 -14.74621 -14.70977 -14.67112 -14.19633 -13.89808 -13.69581 -13.48060 -13.44300 -13.29107 -13.25195 -12.89519 -12.72461 -12.64294 -12.56207 -12.53390 -12.09669 -11.86107 -11.84910 -11.41311 -11.36914 -10.99699 -10.85093 -10.73167 -10.47983 -10.40170 -10.36554 -10.05551 -10.02282 -9.84038 -9.76048 -9.60703 -9.17597 -8.93065 -8.76356 -7.28681 -5.79347 -3.15157 0.68646 0.87939 2.55455 2.86620 3.35845 3.38891 3.38985 3.44296 4.00841 4.20652 4.32838 4.43533 4.49012 4.56773 4.57053 4.58038 4.68402 4.70972 4.75343 4.81722 4.99021 5.09610 5.11980 5.17193 5.20793 5.23314 5.32478 5.35759 5.46357 5.47578 5.52340 5.57347 5.58662 5.71599 5.76209 5.80168 5.81789 5.83122 5.92122 5.93938 6.03219 6.09920 6.20165 6.24286 6.32921 6.37400 6.52007 6.69901 6.88296 7.53041 7.59744 7.96397 8.08574 8.39843 9.17724 9.90452 10.09504 11.38845 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020298 B = 0.001953 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.093720 B =14331.866633 C =14605.375042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.136 4.136 3 C 0.090 3.910 4 N -0.480 5.480 5 C 0.095 3.905 6 C -0.126 4.126 7 C -0.062 4.062 8 C -0.129 4.129 9 C 0.531 3.469 10 O -0.543 6.543 11 N -0.626 5.626 12 C 0.105 3.895 13 C -0.101 4.101 14 H 0.085 0.915 15 C -0.117 4.117 16 C -0.142 4.142 17 C 0.188 3.812 18 H 0.066 0.934 19 N -0.745 5.745 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.933 5.933 24 Si 0.883 3.117 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.278 1.278 28 C -0.112 4.112 29 H 0.085 0.915 30 C 0.113 3.887 31 C -0.075 4.075 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.064 0.936 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.081 0.919 50 H 0.078 0.922 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.737 25.207 -6.442 31.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 C -0.067 4.067 4 N -0.187 5.187 5 C -0.062 4.062 6 C -0.128 4.128 7 C -0.100 4.100 8 C -0.169 4.169 9 C 0.320 3.680 10 O -0.421 6.421 11 N -0.360 5.360 12 C -0.018 4.018 13 C -0.120 4.120 14 H 0.103 0.897 15 C -0.155 4.155 16 C -0.183 4.183 17 C 0.078 3.922 18 H 0.084 0.916 19 N -0.386 5.386 20 C -0.374 4.374 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.580 5.580 24 Si 0.714 3.286 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.204 1.204 28 C -0.132 4.132 29 H 0.104 0.896 30 C -0.009 4.009 31 C -0.101 4.101 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.172 0.828 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.194 0.806 48 H 0.070 0.930 49 H 0.100 0.900 50 H 0.096 0.904 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.880 25.720 -7.064 31.565 hybrid contribution -1.452 -1.700 -0.278 2.253 sum -18.332 24.020 -7.343 31.096 Atomic orbital electron populations 1.20739 0.90149 1.03239 1.02707 1.20960 0.97644 0.94142 1.01029 1.22672 0.89997 0.97471 0.96545 1.67694 1.08354 1.31253 1.11418 1.22711 1.00389 0.87101 0.95994 1.20936 0.94524 0.96722 1.00608 1.20285 1.00493 0.93488 0.95744 1.21610 1.00953 0.95639 0.98703 1.20209 0.79920 0.85672 0.82164 1.90730 1.56300 1.64639 1.30404 1.49277 1.54316 1.26903 1.05457 1.22814 1.00812 0.96773 0.81412 1.22773 1.00056 0.93817 0.95382 0.89678 1.22410 0.99397 0.98818 0.94925 1.23183 1.00369 0.94375 1.00345 1.21133 0.95270 0.84977 0.90849 0.91585 1.42809 1.15055 1.02000 1.78760 1.19064 0.91411 0.90741 1.36211 0.89173 1.24673 0.96725 0.96363 1.01301 1.69697 1.25619 1.08688 1.54023 0.86574 0.83080 0.79913 0.79071 1.21050 1.21773 1.20376 1.23099 0.98061 0.96635 0.95420 0.89638 1.22627 0.94543 0.84625 0.99129 1.21449 0.93461 0.98336 0.96812 0.90820 0.91096 0.91216 0.82966 0.82752 0.89804 0.89572 0.88808 0.88952 0.90364 0.90739 0.92105 0.91509 0.91723 0.91688 0.80589 0.93049 0.89998 0.90397 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.04 36.01 0.36 -0.10 16 2 C -0.14 -0.92 5.90 -104.48 -0.62 -1.54 16 3 C 0.09 0.70 10.86 -17.55 -0.19 0.51 16 4 N -0.48 -4.64 10.36 -13.25 -0.14 -4.78 16 5 C 0.09 0.82 10.86 -17.55 -0.19 0.62 16 6 C -0.13 -1.00 5.15 -104.48 -0.54 -1.54 16 7 C -0.06 -0.51 4.66 -27.88 -0.13 -0.64 16 8 C -0.13 -1.07 4.66 -27.89 -0.13 -1.20 16 9 C 0.53 6.67 7.92 -10.99 -0.09 6.59 16 10 O -0.54 -9.01 16.27 5.55 0.09 -8.92 16 11 N -0.63 -7.63 3.31 -168.68 -0.56 -8.19 16 12 C 0.10 0.98 6.47 -2.06 -0.01 0.97 16 13 C -0.10 -1.10 3.97 -87.95 -0.35 -1.45 16 14 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 15 C -0.12 -1.30 6.36 -25.16 -0.16 -1.46 16 16 C -0.14 -2.19 6.57 -24.80 -0.16 -2.35 16 17 C 0.19 3.30 3.06 -66.36 -0.20 3.10 16 18 H 0.07 1.21 7.12 -51.93 -0.37 0.84 16 19 N -0.74 -16.80 5.01 -51.91 -0.26 -17.06 16 20 C -0.24 -6.68 10.44 -15.06 -0.16 -6.84 16 21 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 22 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 23 N -0.93 -28.97 13.97 55.49 0.78 -28.20 16 24 Si 0.88 21.92 27.73 -169.99 -4.71 17.21 16 25 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 28 C -0.11 -1.61 3.65 -88.16 -0.32 -1.93 16 29 H 0.09 1.33 7.79 -51.93 -0.40 0.92 16 30 C 0.11 1.63 6.58 -2.28 -0.01 1.61 16 31 C -0.07 -0.54 9.55 -39.28 -0.37 -0.91 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 34 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 35 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 38 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.64 7.99 -51.93 -0.42 0.23 16 41 H 0.08 0.68 7.21 -51.93 -0.37 0.30 16 42 H 0.07 0.52 7.32 -51.93 -0.38 0.14 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.67 7.18 -51.93 -0.37 0.30 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.36 8.11 5.46 -40.82 -0.22 7.89 16 48 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 49 H 0.08 1.35 7.88 -51.93 -0.41 0.94 16 50 H 0.08 1.13 7.20 -51.93 -0.37 0.76 16 51 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 406.42 15.07 6.12 6.12 Total: -1.00 -34.00 406.42 -10.45 -44.45 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.40 Total: 5.87 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -3.37 Total: -6.51 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.18 Total: -58.22 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.00 -10.45 -44.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026310585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.174 kcal (2) G-P(sol) polarization free energy of solvation -33.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds