Wall clock time and date at job start Wed Apr 1 2020 02:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38221 * 120.41609 * 2 1 4 4 N 1.31860 * 120.76188 * 179.97438 * 3 2 1 5 5 C 1.31886 * 121.72046 * 359.70735 * 4 3 2 6 6 C 1.38173 * 120.76773 * 0.58210 * 5 4 3 7 7 C 1.50707 * 120.41849 * 179.69944 * 6 5 4 8 8 C 1.52995 * 109.47374 * 269.72818 * 7 6 5 9 9 C 1.50706 * 109.47029 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99770 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99763 * 180.02562 * 9 8 7 12 12 C 1.49213 * 126.05696 * 0.04236 * 11 9 8 13 13 C 1.50356 * 104.85760 * 172.89911 * 12 11 9 14 14 H 1.09004 * 109.72732 * 279.06348 * 13 12 11 15 15 C 1.51006 * 125.55124 * 144.31122 * 13 12 11 16 16 C 1.56402 * 101.59352 * 203.98914 * 15 13 12 17 17 C 1.55946 * 105.78908 * 25.02054 * 16 15 13 18 18 H 1.09003 * 110.49228 * 126.34095 * 17 16 15 19 19 N 1.46495 * 110.49221 * 248.87152 * 17 16 15 20 20 C 1.36927 * 120.00397 * 273.54569 * 19 17 16 21 21 H 1.08001 * 119.99785 * 0.02562 * 20 19 17 22 22 C 1.38815 * 120.00226 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00187 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99692 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47403 * 60.00524 * 24 22 20 26 26 H 1.48502 * 109.46757 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.47095 * 299.99722 * 24 22 20 28 28 C 1.50292 * 104.15480 * 7.54093 * 17 16 15 29 29 H 1.08997 * 109.99893 * 80.47879 * 28 17 16 30 30 C 1.49696 * 126.05743 * 180.02562 * 11 9 8 31 31 C 1.38625 * 120.41939 * 179.97438 * 2 1 3 32 32 H 1.08997 * 109.46917 * 270.01436 * 1 2 3 33 33 H 1.08997 * 109.47026 * 30.01807 * 1 2 3 34 34 H 1.09001 * 109.46667 * 150.01934 * 1 2 3 35 35 H 1.08001 * 119.62455 * 359.96345 * 3 2 1 36 36 H 1.08008 * 119.61111 * 180.31326 * 5 4 3 37 37 H 1.08997 * 109.46600 * 149.72251 * 7 6 5 38 38 H 1.09006 * 109.46567 * 29.73127 * 7 6 5 39 39 H 1.09005 * 109.47119 * 60.00131 * 8 7 6 40 40 H 1.08998 * 109.47235 * 300.00279 * 8 7 6 41 41 H 1.08996 * 110.36601 * 54.05886 * 12 11 9 42 42 H 1.08993 * 110.36517 * 291.74275 * 12 11 9 43 43 H 1.09000 * 111.00279 * 322.07009 * 15 13 12 44 44 H 1.08998 * 110.99713 * 85.87392 * 15 13 12 45 45 H 1.09000 * 110.18520 * 144.09603 * 16 15 13 46 46 H 1.08992 * 110.18802 * 265.93809 * 16 15 13 47 47 H 0.97007 * 119.99885 * 93.54982 * 19 17 16 48 48 H 0.96994 * 119.99895 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.84539 * 36.70274 * 30 11 9 50 50 H 1.09004 * 111.01754 * 273.17157 * 30 11 9 51 51 H 1.08005 * 120.78759 * 0.03560 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2256 0.0823 0.0068 6 6 3.5948 -1.1470 0.0010 7 6 4.4027 -2.4192 0.0014 8 6 4.6767 -2.8499 -1.4409 9 6 5.4851 -4.1218 -1.4404 10 8 5.8105 -4.6330 -0.3899 11 7 5.8473 -4.6905 -2.6074 12 6 5.5241 -4.1789 -3.9713 13 6 6.2991 -5.0630 -4.9085 14 1 7.3346 -4.7265 -4.9599 15 6 5.8346 -5.5192 -6.2709 16 6 6.6704 -6.8266 -6.4666 17 6 7.0091 -7.3325 -5.0308 18 1 6.6984 -8.3701 -4.9087 19 7 8.4425 -7.1926 -4.7627 20 6 9.3084 -8.1871 -5.1316 21 1 8.9347 -9.0745 -5.6207 22 6 10.6666 -8.0547 -4.8770 23 7 11.1221 -6.9730 -4.2814 24 14 11.8478 -9.4112 -5.3811 25 1 11.7761 -9.6092 -6.8510 26 1 13.2314 -9.0298 -4.9994 27 1 11.4752 -10.6731 -4.6928 28 6 6.2143 -6.4324 -4.1270 29 1 5.1790 -6.7702 -4.0812 30 6 6.6455 -5.9470 -2.7650 31 6 2.2090 -1.1954 0.0005 32 1 -0.3633 0.0003 1.0277 33 1 -0.3633 0.8898 -0.5141 34 1 -0.3633 -0.8902 -0.5136 35 1 1.6675 2.1277 -0.0006 36 1 5.3047 0.1286 0.0121 37 1 3.8460 -3.2029 0.5152 38 1 5.3486 -2.2487 0.5156 39 1 5.2334 -2.0662 -1.9546 40 1 3.7308 -3.0203 -1.9551 41 1 5.8464 -3.1427 -4.0741 42 1 4.4551 -4.2654 -4.1654 43 1 4.7662 -5.7354 -6.2673 44 1 6.0789 -4.7807 -7.0344 45 1 6.0815 -7.5734 -6.9992 46 1 7.5870 -6.6086 -7.0145 47 1 8.7783 -6.3954 -4.3236 48 1 12.0711 -6.8807 -4.1032 49 1 6.3840 -6.6719 -1.9941 50 1 7.7147 -5.7355 -2.7494 51 1 1.6888 -2.1419 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026310587.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:03 Heat of formation + Delta-G solvation = 14.148570 kcal Electronic energy + Delta-G solvation = -29396.113758 eV Core-core repulsion = 25488.336557 eV Total energy + Delta-G solvation = -3907.777200 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.72385 -40.42597 -38.71063 -35.25986 -34.80950 -33.92366 -33.32253 -30.97154 -30.78882 -29.15081 -28.50426 -27.66500 -25.76238 -25.03330 -23.45205 -23.29250 -22.68173 -21.05549 -19.99711 -19.08389 -18.78993 -17.52787 -17.29520 -17.01740 -16.78950 -16.07809 -15.57362 -14.96384 -14.69232 -14.61000 -14.39751 -14.28845 -14.05752 -13.65699 -13.42256 -13.36976 -13.26512 -13.18047 -12.89739 -12.80063 -12.63414 -12.43854 -12.16219 -11.93018 -11.72716 -11.51283 -11.26618 -11.22276 -10.98001 -10.81987 -10.65259 -10.50987 -10.27590 -10.12540 -9.97311 -9.78545 -9.71002 -9.62266 -9.55123 -9.08821 -8.92510 -8.52079 -6.99022 -5.78903 -3.08014 0.76710 0.95694 2.73132 2.95951 3.42906 3.46838 3.47777 3.48621 4.07110 4.18127 4.37029 4.40064 4.57622 4.62326 4.64391 4.68052 4.80353 4.86292 4.93630 5.01689 5.14556 5.19943 5.24094 5.29386 5.32852 5.40588 5.41989 5.51074 5.54788 5.56968 5.63110 5.66314 5.77919 5.81359 5.87049 5.89815 5.92119 6.01931 6.03109 6.12233 6.25337 6.27796 6.36657 6.40909 6.43566 6.52101 6.64556 6.80627 7.03616 7.62924 7.67797 7.68887 8.24852 8.39539 9.50765 10.06993 10.41445 11.43432 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020202 B = 0.001995 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.647588 B =14029.915134 C =14658.236275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.137 4.137 3 C 0.090 3.910 4 N -0.480 5.480 5 C 0.095 3.905 6 C -0.125 4.125 7 C -0.062 4.062 8 C -0.129 4.129 9 C 0.526 3.474 10 O -0.544 6.544 11 N -0.624 5.624 12 C 0.122 3.878 13 C -0.129 4.129 14 H 0.090 0.910 15 C -0.095 4.095 16 C -0.145 4.145 17 C 0.194 3.806 18 H 0.054 0.946 19 N -0.718 5.718 20 C -0.241 4.241 21 H 0.070 0.930 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C -0.119 4.119 29 H 0.074 0.926 30 C 0.129 3.871 31 C -0.075 4.075 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.076 0.924 47 H 0.384 0.616 48 H 0.256 0.744 49 H 0.076 0.924 50 H 0.084 0.916 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.264 13.778 4.102 26.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 C -0.068 4.068 4 N -0.187 5.187 5 C -0.062 4.062 6 C -0.127 4.127 7 C -0.100 4.100 8 C -0.169 4.169 9 C 0.315 3.685 10 O -0.422 6.422 11 N -0.359 5.359 12 C -0.001 4.001 13 C -0.148 4.148 14 H 0.108 0.892 15 C -0.133 4.133 16 C -0.186 4.186 17 C 0.082 3.918 18 H 0.072 0.928 19 N -0.360 5.360 20 C -0.372 4.372 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.139 4.139 29 H 0.092 0.908 30 C 0.009 3.991 31 C -0.101 4.101 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.170 0.830 36 H 0.173 0.827 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.095 0.905 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.094 0.906 50 H 0.103 0.897 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -21.548 14.207 4.708 26.236 hybrid contribution 0.405 -1.214 -0.309 1.317 sum -21.144 12.992 4.399 25.203 Atomic orbital electron populations 1.20730 0.90202 1.03187 1.02644 1.20948 0.97595 0.94162 1.01177 1.22663 0.90020 0.97439 0.96641 1.67697 1.08333 1.31278 1.11402 1.22730 1.00445 0.87099 0.95878 1.20953 0.94520 0.96782 1.00420 1.20289 1.00469 0.93376 0.95887 1.21613 1.00905 0.95848 0.98524 1.20208 0.80138 0.85744 0.82441 1.90717 1.56413 1.64632 1.30466 1.49908 1.54120 1.26625 1.05283 1.21274 0.99293 0.97704 0.81785 1.22232 1.01432 0.95649 0.95467 0.89182 1.21694 0.99132 0.97958 0.94485 1.23858 0.99498 0.94989 1.00261 1.20135 0.85495 0.95791 0.90334 0.92794 1.42425 1.00042 1.22321 1.71167 1.19185 0.88177 0.97804 1.32049 0.91174 1.24741 0.97005 0.97683 1.01384 1.69637 1.13687 1.27366 1.47326 0.86281 0.80444 0.81416 0.78101 1.21321 1.21761 1.21286 1.22434 1.00697 0.96513 0.94262 0.90775 1.21454 0.96284 0.84649 0.96756 1.21438 0.93457 0.98288 0.96899 0.90876 0.91136 0.91252 0.83018 0.82698 0.89862 0.89548 0.88830 0.89088 0.91204 0.91555 0.92117 0.92058 0.92885 0.90508 0.78132 0.93422 0.90553 0.89736 0.84843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.04 36.01 0.36 -0.15 16 2 C -0.14 -1.02 5.90 -104.48 -0.62 -1.63 16 3 C 0.09 0.76 10.86 -17.55 -0.19 0.57 16 4 N -0.48 -5.08 10.36 -13.25 -0.14 -5.22 16 5 C 0.10 0.92 10.86 -17.55 -0.19 0.73 16 6 C -0.12 -1.11 5.15 -104.48 -0.54 -1.65 16 7 C -0.06 -0.59 4.66 -27.88 -0.13 -0.72 16 8 C -0.13 -1.25 4.92 -27.88 -0.14 -1.39 16 9 C 0.53 7.50 7.88 -10.98 -0.09 7.41 16 10 O -0.54 -9.87 16.32 5.56 0.09 -9.78 16 11 N -0.62 -8.88 3.43 -171.57 -0.59 -9.47 16 12 C 0.12 1.39 6.41 -3.86 -0.02 1.37 16 13 C -0.13 -1.76 2.73 -90.26 -0.25 -2.01 16 14 H 0.09 1.48 7.72 -51.93 -0.40 1.08 16 15 C -0.09 -1.20 6.72 -25.90 -0.17 -1.37 16 16 C -0.15 -2.32 6.73 -23.33 -0.16 -2.48 16 17 C 0.19 3.56 3.45 -67.71 -0.23 3.33 16 18 H 0.05 1.02 8.11 -51.93 -0.42 0.60 16 19 N -0.72 -16.88 4.85 -53.21 -0.26 -17.14 16 20 C -0.24 -6.43 9.97 -15.06 -0.15 -6.58 16 21 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -27.59 13.06 55.49 0.72 -26.87 16 24 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 28 C -0.12 -1.84 2.59 -90.35 -0.23 -2.08 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 C 0.13 2.18 6.52 -3.32 -0.02 2.16 16 31 C -0.07 -0.59 9.54 -39.28 -0.37 -0.97 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.26 8.09 -51.93 -0.42 -0.17 16 34 H 0.07 0.28 8.10 -51.93 -0.42 -0.14 16 35 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.08 0.82 8.05 -51.93 -0.42 0.41 16 38 H 0.09 0.89 8.05 -51.93 -0.42 0.47 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.08 1.43 7.98 -51.93 -0.41 1.01 16 47 H 0.38 9.64 6.13 -40.82 -0.25 9.39 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 50 H 0.08 1.67 6.87 -51.93 -0.36 1.31 16 51 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 410.10 15.07 6.18 6.18 Total: -1.00 -32.31 410.10 -10.81 -43.12 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -8.56 Total: 7.98 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -3.24 Total: -5.87 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.26 Total: -58.69 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.31 -10.81 -43.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026310587.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.271 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds