Wall clock time and date at job start Wed Apr 1 2020 03:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38352 * 119.45855 * 2 1 4 4 C 1.38360 * 119.30195 * 179.71806 * 3 2 1 5 5 C 1.50696 * 120.85735 * 180.25049 * 4 3 2 6 6 C 1.40026 * 118.28764 * 0.52140 * 4 3 2 7 7 C 1.47834 * 120.55883 * 179.72977 * 6 4 3 8 8 O 1.21555 * 120.00160 * 269.72068 * 7 6 4 9 9 N 1.34774 * 120.00188 * 89.72308 * 7 6 4 10 10 C 1.47222 * 126.69928 * 359.97438 * 9 7 6 11 11 C 1.55733 * 106.44820 * 148.32318 * 10 9 7 12 12 H 1.09000 * 112.38330 * 258.03955 * 11 10 9 13 13 C 1.54409 * 109.24166 * 132.63043 * 11 10 9 14 14 C 1.55059 * 103.89461 * 223.04615 * 13 11 10 15 15 C 1.55057 * 102.14033 * 40.05158 * 14 13 11 16 16 H 1.08995 * 110.53815 * 78.53911 * 15 14 13 17 17 N 1.46503 * 110.53350 * 201.17379 * 15 14 13 18 18 C 1.36939 * 119.99915 * 273.54743 * 17 15 14 19 19 H 1.08004 * 119.99654 * 359.97438 * 18 17 15 20 20 C 1.38804 * 120.00195 * 180.02562 * 18 17 15 21 21 N 1.31627 * 120.00075 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00280 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47009 * 89.99945 * 22 20 18 24 24 H 1.48493 * 109.47201 * 210.00159 * 22 20 18 25 25 H 1.48504 * 109.47181 * 330.00107 * 22 20 18 26 26 C 1.54324 * 103.93685 * 319.92403 * 15 14 13 27 27 H 1.09000 * 111.69490 * 262.79818 * 26 15 14 28 28 C 1.47211 * 126.70887 * 179.97438 * 9 7 6 29 29 C 1.39528 * 118.88038 * 359.45940 * 6 4 3 30 30 C 1.50698 * 119.71617 * 180.27510 * 29 6 4 31 31 N 1.31687 * 120.56564 * 0.29631 * 29 6 4 32 32 H 1.08998 * 109.46935 * 270.02130 * 1 2 3 33 33 H 1.08992 * 109.47107 * 30.02462 * 1 2 3 34 34 H 1.09000 * 109.46647 * 150.02578 * 1 2 3 35 35 H 1.07996 * 120.35161 * 359.97438 * 3 2 1 36 36 H 1.09005 * 109.47684 * 270.27504 * 5 4 3 37 37 H 1.09001 * 109.47124 * 30.27278 * 5 4 3 38 38 H 1.09002 * 109.47032 * 150.27447 * 5 4 3 39 39 H 1.08997 * 110.07019 * 267.97050 * 10 9 7 40 40 H 1.08999 * 110.07182 * 29.45263 * 10 9 7 41 41 H 1.09001 * 110.57641 * 104.43479 * 13 11 10 42 42 H 1.08998 * 110.53648 * 341.63634 * 13 11 10 43 43 H 1.09002 * 110.90474 * 281.82964 * 14 13 11 44 44 H 1.09003 * 110.90440 * 158.27187 * 14 13 11 45 45 H 0.96999 * 120.00110 * 93.54094 * 17 15 14 46 46 H 0.96993 * 120.00120 * 180.02562 * 21 20 18 47 47 H 1.09002 * 110.07176 * 92.02881 * 28 9 7 48 48 H 1.08997 * 110.07156 * 330.49128 * 28 9 7 49 49 H 1.09002 * 109.47088 * 89.99675 * 30 29 6 50 50 H 1.09000 * 109.47267 * 209.99950 * 30 29 6 51 51 H 1.09002 * 109.47135 * 329.99890 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2009 0.0059 5 6 4.3475 2.4924 0.0118 6 6 4.2313 -0.0339 0.0005 7 6 5.7083 -0.0965 0.0005 8 8 6.3155 -0.1227 -1.0522 9 7 6.3817 -0.1246 1.1676 10 6 5.8000 -0.0989 2.5198 11 6 6.7587 -0.9244 3.4280 12 1 6.3792 -1.9261 3.6298 13 6 7.0416 -0.1317 4.7225 14 6 8.5661 -0.3099 4.9426 15 6 9.1199 -0.1919 3.4991 16 1 9.1666 0.8527 3.1916 17 7 10.4430 -0.8138 3.4040 18 6 11.5639 -0.0887 3.7092 19 1 11.4725 0.9417 4.0196 20 6 12.8175 -0.6777 3.6185 21 7 12.9289 -1.9333 3.2397 22 14 14.3466 0.3116 4.0341 23 1 14.6550 0.1624 5.4791 24 1 15.4915 -0.1854 3.2297 25 1 14.1087 1.7443 3.7241 26 6 8.0933 -0.9629 2.6429 27 1 8.4181 -1.9849 2.4474 28 6 7.8424 -0.1870 1.3395 29 6 3.4716 -1.2043 0.0010 30 6 4.1628 -2.5435 0.0015 31 7 2.1559 -1.1487 0.0005 32 1 -0.3633 0.0004 1.0277 33 1 -0.3633 0.8897 -0.5142 34 1 -0.3632 -0.8902 -0.5134 35 1 1.6444 2.1381 -0.0004 36 1 4.5349 2.8084 -1.0145 37 1 3.7718 3.2601 0.5289 38 1 5.2973 2.3430 0.5252 39 1 5.7292 0.9284 2.8771 40 1 4.8126 -0.5606 2.5111 41 1 6.4828 -0.5518 5.5588 42 1 6.7953 0.9215 4.5875 43 1 8.7861 -1.2905 5.3647 44 1 8.9626 0.4826 5.5773 45 1 10.5251 -1.7391 3.1249 46 1 13.8049 -2.3450 3.1767 47 1 8.2531 0.8196 1.4185 48 1 8.2959 -0.7116 0.4986 49 1 4.3294 -2.8659 1.0293 50 1 3.5385 -3.2747 -0.5121 51 1 5.1203 -2.4584 -0.5124 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026316451.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:57 Heat of formation + Delta-G solvation = 0.534665 kcal Electronic energy + Delta-G solvation = -30660.339561 eV Core-core repulsion = 26751.972018 eV Total energy + Delta-G solvation = -3908.367544 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.18178 -39.92748 -38.32196 -35.22407 -34.52653 -34.01475 -33.36553 -31.02306 -29.92823 -29.26513 -28.44804 -28.10955 -27.42617 -25.14760 -23.93951 -22.95251 -22.23730 -21.36395 -20.33974 -19.42067 -19.18097 -17.61468 -17.34938 -16.98979 -16.22214 -15.70736 -15.27599 -15.07056 -14.94687 -14.47424 -14.18020 -14.03034 -13.69979 -13.63535 -13.52715 -13.30710 -13.15660 -13.04961 -13.02432 -12.61959 -12.58320 -12.48377 -12.28512 -12.05201 -11.95336 -11.92248 -11.69851 -11.18523 -10.93772 -10.80637 -10.71732 -10.43107 -10.36497 -10.23929 -10.19941 -9.96463 -9.76754 -9.68940 -9.59544 -9.04584 -8.89488 -8.71000 -6.97129 -5.78832 -3.07792 0.61631 0.90345 2.45163 2.89805 3.33480 3.42161 3.47577 3.49246 3.84616 4.20694 4.25073 4.33968 4.48882 4.58460 4.72588 4.78195 4.85407 4.99390 5.05586 5.09972 5.20926 5.23174 5.24789 5.25923 5.35013 5.37140 5.38510 5.42526 5.51508 5.54943 5.57604 5.70081 5.73391 5.81087 5.81926 5.86291 5.91109 5.92205 5.93949 6.02402 6.15294 6.21209 6.28599 6.34769 6.38749 6.50980 6.61458 6.75981 7.00831 7.46504 7.67442 7.68298 8.03901 8.39623 9.50877 10.07905 10.41891 11.43655 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020631 B = 0.002479 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.844078 B =11289.907220 C =11422.156523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.145 3.855 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.123 4.123 6 C -0.178 4.178 7 C 0.586 3.414 8 O -0.530 6.530 9 N -0.608 5.608 10 C 0.106 3.894 11 C -0.096 4.096 12 H 0.087 0.913 13 C -0.116 4.116 14 C -0.142 4.142 15 C 0.184 3.816 16 H 0.055 0.945 17 N -0.720 5.720 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.106 4.106 27 H 0.090 0.910 28 C 0.115 3.885 29 C 0.174 3.826 30 C -0.112 4.112 31 N -0.488 5.488 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.084 0.916 50 H 0.084 0.916 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.952 5.295 -2.861 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.008 3.992 3 C -0.203 4.203 4 C -0.009 4.009 5 C -0.180 4.180 6 C -0.183 4.183 7 C 0.373 3.627 8 O -0.407 6.407 9 N -0.340 5.340 10 C -0.018 4.018 11 C -0.116 4.116 12 H 0.106 0.894 13 C -0.154 4.154 14 C -0.183 4.183 15 C 0.073 3.927 16 H 0.073 0.927 17 N -0.361 5.361 18 C -0.371 4.371 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.127 4.127 27 H 0.108 0.892 28 C -0.007 4.007 29 C 0.036 3.964 30 C -0.169 4.169 31 N -0.199 5.199 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.218 0.782 46 H 0.065 0.935 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.103 0.897 50 H 0.102 0.898 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.974 4.651 -3.513 26.620 hybrid contribution 1.381 0.984 0.230 1.711 sum -24.593 5.634 -3.283 25.443 Atomic orbital electron populations 1.20747 0.88499 1.03651 1.03292 1.21408 0.97115 0.88073 0.92620 1.21732 0.93563 0.99512 1.05486 1.20316 0.93803 0.94419 0.92344 1.20921 1.00068 0.93335 1.03651 1.20601 0.94262 0.94658 1.08813 1.17587 0.86015 0.76347 0.82727 1.90833 1.69281 1.50143 1.30451 1.48616 1.08455 1.71705 1.05268 1.22637 0.97138 1.00302 0.81673 1.22911 0.94708 0.98927 0.95024 0.89419 1.22481 0.98159 0.99096 0.95666 1.23299 0.92623 1.01801 1.00587 1.21230 0.84977 0.95195 0.91255 0.92687 1.42435 0.99714 1.13123 1.80795 1.19208 0.85019 0.95009 1.37827 0.91213 1.24739 0.97562 0.96268 1.02281 1.69655 1.23060 1.11555 1.53715 0.86214 0.83240 0.79134 0.77739 1.21753 1.21792 1.20777 1.22887 0.95244 1.00668 0.93855 0.89194 1.22246 0.78727 1.01042 0.98640 1.21284 0.88840 0.94603 0.91686 1.20835 1.00254 0.92136 1.03682 1.67379 1.08753 1.29127 1.14640 0.90114 0.90542 0.90269 0.84295 0.89761 0.90319 0.90804 0.91034 0.91429 0.92144 0.91714 0.91489 0.92131 0.78168 0.93484 0.90787 0.90105 0.89728 0.89759 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.64 10.16 36.01 0.37 -0.28 16 2 C 0.15 1.40 6.78 -82.51 -0.56 0.84 16 3 C -0.18 -1.63 9.43 -39.49 -0.37 -2.01 16 4 C 0.00 -0.01 5.95 -103.91 -0.62 -0.63 16 5 C -0.12 -1.12 9.69 36.00 0.35 -0.77 16 6 C -0.18 -2.28 4.51 -104.82 -0.47 -2.75 16 7 C 0.59 8.69 4.41 -12.34 -0.05 8.64 16 8 O -0.53 -9.86 17.34 5.32 0.09 -9.77 16 9 N -0.61 -8.26 3.32 -171.48 -0.57 -8.83 16 10 C 0.11 1.18 6.42 -2.19 -0.01 1.17 16 11 C -0.10 -1.16 4.01 -87.43 -0.35 -1.51 16 12 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 13 C -0.12 -1.39 6.38 -24.90 -0.16 -1.55 16 14 C -0.14 -2.30 6.59 -24.56 -0.16 -2.46 16 15 C 0.18 3.37 3.00 -66.15 -0.20 3.17 16 16 H 0.06 1.04 7.17 -51.93 -0.37 0.67 16 17 N -0.72 -17.19 5.23 -51.70 -0.27 -17.46 16 18 C -0.24 -6.43 9.97 -15.06 -0.15 -6.58 16 19 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 22 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.11 -1.62 3.55 -88.54 -0.31 -1.94 16 27 H 0.09 1.48 7.79 -51.93 -0.40 1.08 16 28 C 0.12 1.77 6.54 -3.26 -0.02 1.75 16 29 C 0.17 2.16 6.82 -82.17 -0.56 1.60 16 30 C -0.11 -1.23 9.79 36.00 0.35 -0.88 16 31 N -0.49 -5.79 10.17 -5.42 -0.06 -5.85 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 38 H 0.07 0.77 7.19 -51.93 -0.37 0.39 16 39 H 0.07 0.74 7.20 -51.93 -0.37 0.36 16 40 H 0.07 0.70 7.51 -51.93 -0.39 0.31 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.72 7.22 -51.93 -0.38 0.34 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.38 9.83 7.58 -40.82 -0.31 9.52 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.07 1.17 7.13 -51.93 -0.37 0.80 16 48 H 0.08 1.38 7.92 -51.93 -0.41 0.97 16 49 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 51 H 0.08 0.98 7.07 -51.93 -0.37 0.61 16 LS Contribution 406.95 15.07 6.13 6.13 Total: -1.00 -32.46 406.95 -10.37 -42.83 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -8.36 Total: 7.46 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -3.04 Total: -4.63 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -0.17 Total: -59.13 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.46 -10.37 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026316451.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.362 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds