Wall clock time and date at job start Wed Apr 1 2020 03:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38356 * 119.46092 * 2 1 4 4 C 1.38360 * 119.30244 * 179.74628 * 3 2 1 5 5 C 1.50692 * 120.85723 * 180.30240 * 4 3 2 6 6 C 1.40027 * 118.28713 * 0.54245 * 4 3 2 7 7 C 1.47829 * 120.55960 * 179.73778 * 6 4 3 8 8 O 1.21561 * 120.00068 * 269.72148 * 7 6 4 9 9 N 1.34779 * 120.00641 * 89.71956 * 7 6 4 10 10 C 1.49216 * 126.05252 * 359.96282 * 9 7 6 11 11 C 1.50318 * 104.32835 * 172.19593 * 10 9 7 12 12 H 1.09005 * 110.86007 * 279.87469 * 11 10 9 13 13 C 1.51009 * 124.69977 * 145.19016 * 11 10 9 14 14 C 1.56736 * 101.64490 * 204.37339 * 13 11 10 15 15 C 1.55940 * 105.62979 * 24.94836 * 14 13 11 16 16 H 1.08997 * 110.49404 * 126.35863 * 15 14 13 17 17 N 1.46498 * 110.49243 * 248.88759 * 15 14 13 18 18 C 1.36943 * 119.99752 * 271.46149 * 17 15 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 15 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 15 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47294 * 90.00155 * 22 20 18 24 24 H 1.48499 * 109.47218 * 210.00015 * 22 20 18 25 25 H 1.48496 * 109.47166 * 329.99846 * 22 20 18 26 26 C 1.50290 * 104.27543 * 7.62137 * 15 14 13 27 27 H 1.09003 * 109.99583 * 80.41289 * 26 15 14 28 28 C 1.49700 * 126.06483 * 179.97438 * 9 7 6 29 29 C 1.39527 * 118.88190 * 359.46031 * 6 4 3 30 30 C 1.50693 * 119.71621 * 180.29521 * 29 6 4 31 31 N 1.31692 * 120.56433 * 0.27601 * 29 6 4 32 32 H 1.09001 * 109.46557 * 269.97264 * 1 2 3 33 33 H 1.09002 * 109.46639 * 29.97172 * 1 2 3 34 34 H 1.09000 * 109.46989 * 149.97420 * 1 2 3 35 35 H 1.07999 * 120.34757 * 0.04818 * 3 2 1 36 36 H 1.08997 * 109.47161 * 270.24559 * 5 4 3 37 37 H 1.09008 * 109.47236 * 30.24370 * 5 4 3 38 38 H 1.09001 * 109.47313 * 150.24464 * 5 4 3 39 39 H 1.09001 * 110.36024 * 291.81216 * 10 9 7 40 40 H 1.08999 * 110.36548 * 54.01770 * 10 9 7 41 41 H 1.08993 * 110.99790 * 322.41981 * 13 11 10 42 42 H 1.09003 * 111.00108 * 86.22621 * 13 11 10 43 43 H 1.09001 * 110.24821 * 265.92581 * 14 13 11 44 44 H 1.08998 * 110.27380 * 143.98693 * 14 13 11 45 45 H 0.97001 * 120.00384 * 91.74505 * 17 15 14 46 46 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 47 47 H 1.09003 * 110.83845 * 36.63734 * 28 9 7 48 48 H 1.08998 * 110.84380 * 273.02645 * 28 9 7 49 49 H 1.09002 * 109.47107 * 90.00730 * 30 29 6 50 50 H 1.08998 * 109.46928 * 210.00182 * 30 29 6 51 51 H 1.08997 * 109.47441 * 330.00591 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5711 1.2008 0.0053 5 6 4.3476 2.4923 0.0124 6 6 4.2313 -0.0340 -0.0011 7 6 5.7083 -0.0967 -0.0016 8 8 6.3152 -0.1222 -1.0546 9 7 6.3821 -0.1255 1.1653 10 6 5.7777 -0.0994 2.5293 11 6 6.9363 -0.3471 3.4544 12 1 7.1757 -1.4095 3.5008 13 6 7.0901 0.2703 4.8239 14 6 8.6436 0.2139 5.0237 15 6 9.2514 0.1933 3.5878 16 1 9.9869 0.9895 3.4732 17 7 9.8599 -1.1095 3.3071 18 6 11.1696 -1.3384 3.6352 19 1 11.7525 -0.5600 4.1050 20 6 11.7478 -2.5709 3.3641 21 7 11.0374 -3.5193 2.7911 22 14 13.5340 -2.8834 3.8123 23 1 13.6102 -3.4298 5.1910 24 1 14.1198 -3.8604 2.8596 25 1 14.2922 -1.6085 3.7425 26 6 8.0744 0.4300 2.6837 27 1 7.8394 1.4938 2.6486 28 6 7.8695 -0.1892 1.3227 29 6 3.4717 -1.2044 -0.0011 30 6 4.1627 -2.5435 -0.0012 31 7 2.1559 -1.1487 -0.0005 32 1 -0.3632 -0.0005 1.0277 33 1 -0.3633 0.8903 -0.5134 34 1 -0.3633 -0.8898 -0.5142 35 1 1.6444 2.1381 0.0008 36 1 4.5350 2.8091 -1.0136 37 1 3.7719 3.2596 0.5302 38 1 5.2974 2.3424 0.5256 39 1 5.3180 0.8700 2.7219 40 1 5.0402 -0.8954 2.6327 41 1 6.7334 1.3002 4.8303 42 1 6.5765 -0.3235 5.5800 43 1 8.9220 -0.6915 5.5630 44 1 8.9871 1.0955 5.5649 45 1 9.3363 -1.8085 2.8851 46 1 11.4413 -4.3806 2.6019 47 1 8.3666 0.3980 0.5506 48 1 8.2169 -1.2222 1.3100 49 1 4.3294 -2.8665 1.0265 50 1 3.5384 -3.2744 -0.5150 51 1 5.1202 -2.4582 -0.5150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026316452.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:01 Heat of formation + Delta-G solvation = 19.998361 kcal Electronic energy + Delta-G solvation = -30965.381248 eV Core-core repulsion = 27057.857714 eV Total energy + Delta-G solvation = -3907.523534 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.13077 -40.18013 -38.38896 -35.22135 -34.45406 -33.92824 -33.30036 -30.88107 -29.87233 -29.13559 -28.52312 -28.02987 -27.29754 -25.49460 -23.58957 -23.24492 -22.12408 -21.28209 -20.01406 -19.49338 -18.90582 -17.55123 -17.24859 -17.15364 -16.18952 -15.44194 -15.11201 -14.94844 -14.93922 -14.39701 -14.29693 -13.97483 -13.66632 -13.63670 -13.52359 -13.43731 -13.15807 -13.01550 -12.89820 -12.64650 -12.50085 -12.36490 -12.17978 -11.96404 -11.89265 -11.84902 -11.54147 -11.24347 -10.98893 -10.85240 -10.67948 -10.54722 -10.29191 -10.15641 -10.08955 -9.72124 -9.65253 -9.62684 -9.47812 -8.96658 -8.93737 -8.57822 -6.99754 -5.79596 -3.08694 0.69948 0.97842 2.57976 2.89881 3.41173 3.42090 3.47770 3.49381 3.91718 4.12847 4.30362 4.34166 4.49806 4.57197 4.79984 4.92822 5.02786 5.09186 5.14922 5.18791 5.26145 5.29523 5.30035 5.32134 5.39903 5.44158 5.48551 5.52667 5.55977 5.59781 5.61130 5.75414 5.76555 5.80438 5.89205 5.90528 5.96478 5.98569 5.99425 6.10141 6.23481 6.24732 6.35342 6.40480 6.44752 6.50276 6.63359 6.79260 7.02362 7.52337 7.68882 7.75609 8.14262 8.38842 9.50267 10.06118 10.40558 11.42790 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017809 B = 0.002764 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1571.876338 B =10127.350069 C =10586.131189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.144 3.856 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.122 4.122 6 C -0.176 4.176 7 C 0.585 3.415 8 O -0.532 6.532 9 N -0.615 5.615 10 C 0.124 3.876 11 C -0.128 4.128 12 H 0.092 0.908 13 C -0.097 4.097 14 C -0.144 4.144 15 C 0.194 3.806 16 H 0.056 0.944 17 N -0.718 5.718 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.119 4.119 27 H 0.075 0.925 28 C 0.131 3.869 29 C 0.175 3.825 30 C -0.113 4.113 31 N -0.488 5.488 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.138 0.862 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.053 0.947 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.873 11.202 -1.563 23.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.007 3.993 3 C -0.204 4.204 4 C -0.010 4.010 5 C -0.179 4.179 6 C -0.182 4.182 7 C 0.371 3.629 8 O -0.409 6.409 9 N -0.350 5.350 10 C 0.002 3.998 11 C -0.147 4.147 12 H 0.111 0.889 13 C -0.135 4.135 14 C -0.185 4.185 15 C 0.083 3.917 16 H 0.074 0.926 17 N -0.360 5.360 18 C -0.372 4.372 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.139 4.139 27 H 0.094 0.906 28 C 0.010 3.990 29 C 0.037 3.963 30 C -0.170 4.170 31 N -0.199 5.199 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.156 0.844 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.219 0.781 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.106 0.894 49 H 0.103 0.897 50 H 0.102 0.898 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.860 10.407 -2.185 23.414 hybrid contribution 1.207 0.297 0.196 1.258 sum -19.653 10.704 -1.989 22.467 Atomic orbital electron populations 1.20742 0.88562 1.03590 1.03247 1.21399 0.97080 0.88102 0.92762 1.21713 0.93567 0.99450 1.05649 1.20293 0.93774 0.94396 0.92536 1.20908 1.00052 0.93351 1.03561 1.20637 0.94416 0.94598 1.08509 1.17577 0.85981 0.76426 0.82891 1.90827 1.69276 1.50373 1.30468 1.49898 1.08111 1.71920 1.05039 1.21271 0.95791 1.01179 0.81537 1.22251 0.94769 1.02177 0.95488 0.88932 1.21776 0.97775 0.99416 0.94510 1.23914 0.92664 1.01774 1.00168 1.20132 0.91104 0.90218 0.90253 0.92644 1.42435 1.10715 1.10177 1.72637 1.19232 0.87606 0.97373 1.32957 0.91127 1.24733 0.98115 0.96463 1.01455 1.69648 1.35815 1.04652 1.47846 0.86215 0.84949 0.77569 0.77588 1.21796 1.21823 1.20785 1.22472 0.98089 0.99115 0.94244 0.90647 1.21518 0.77820 1.02701 0.96943 1.21301 0.88804 0.94669 0.91539 1.20848 1.00302 0.92063 1.03799 1.67380 1.08799 1.29098 1.14608 0.90162 0.90599 0.90293 0.84387 0.89848 0.90425 0.90820 0.91522 0.91522 0.92137 0.92074 0.90513 0.92845 0.78124 0.93469 0.90355 0.89423 0.89654 0.89774 0.90155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 10.16 36.01 0.37 -0.34 16 2 C 0.14 1.50 6.78 -82.50 -0.56 0.94 16 3 C -0.18 -1.77 9.43 -39.49 -0.37 -2.14 16 4 C 0.00 -0.02 5.95 -103.91 -0.62 -0.64 16 5 C -0.12 -1.16 9.69 36.00 0.35 -0.81 16 6 C -0.18 -2.43 4.87 -104.82 -0.51 -2.94 16 7 C 0.58 9.31 4.41 -12.34 -0.05 9.25 16 8 O -0.53 -10.45 17.44 5.31 0.09 -10.36 16 9 N -0.62 -9.10 3.43 -172.68 -0.59 -9.70 16 10 C 0.12 1.55 6.39 -3.87 -0.02 1.52 16 11 C -0.13 -1.77 2.71 -90.27 -0.24 -2.01 16 12 H 0.09 1.51 7.67 -51.93 -0.40 1.12 16 13 C -0.10 -1.23 6.71 -25.71 -0.17 -1.40 16 14 C -0.14 -2.28 6.76 -23.14 -0.16 -2.44 16 15 C 0.19 3.52 3.45 -67.71 -0.23 3.29 16 16 H 0.06 1.04 8.10 -51.93 -0.42 0.61 16 17 N -0.72 -16.69 4.83 -53.21 -0.26 -16.94 16 18 C -0.24 -6.36 9.96 -15.06 -0.15 -6.51 16 19 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 22 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C -0.12 -1.82 2.63 -90.33 -0.24 -2.06 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 28 C 0.13 2.18 6.48 -3.30 -0.02 2.16 16 29 C 0.18 2.37 6.82 -82.18 -0.56 1.81 16 30 C -0.11 -1.42 9.79 36.00 0.35 -1.07 16 31 N -0.49 -6.26 10.17 -5.42 -0.06 -6.31 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.53 8.11 -51.92 -0.42 0.11 16 38 H 0.07 0.80 7.19 -51.93 -0.37 0.42 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.41 7.98 -51.93 -0.41 1.00 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.38 9.51 6.12 -40.82 -0.25 9.27 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 48 H 0.09 1.69 6.89 -51.93 -0.36 1.34 16 49 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 50 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.08 1.13 7.07 -51.93 -0.37 0.76 16 LS Contribution 407.34 15.07 6.14 6.14 Total: -1.00 -31.77 407.34 -10.38 -42.15 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -8.46 Total: 8.50 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -2.95 Total: -3.80 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.18 Total: -59.60 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.77 -10.38 -42.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026316452.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.145 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds