Wall clock time and date at job start Wed Apr 1 2020 03:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38359 * 119.45927 * 2 1 4 4 C 1.38361 * 119.29918 * 180.02562 * 3 2 1 5 5 C 1.50697 * 120.85138 * 179.97438 * 4 3 2 6 6 C 1.40024 * 118.28931 * 359.93466 * 4 3 2 7 7 C 1.47835 * 120.55610 * 180.29734 * 6 4 3 8 8 O 1.21557 * 120.00044 * 269.72410 * 7 6 4 9 9 N 1.34778 * 120.00257 * 89.72385 * 7 6 4 10 10 C 1.48351 * 128.19208 * 359.67276 * 9 7 6 11 11 C 1.54912 * 104.06932 * 138.26624 * 10 9 7 12 12 H 1.09001 * 112.54561 * 263.89800 * 11 10 9 13 13 C 1.55454 * 109.07350 * 138.47221 * 11 10 9 14 14 C 1.53958 * 106.11697 * 228.94575 * 13 11 10 15 15 C 1.53952 * 104.88769 * 29.97384 * 14 13 11 16 16 H 1.08997 * 110.19898 * 211.26648 * 15 14 13 17 17 N 1.46501 * 110.14212 * 89.58101 * 15 14 13 18 18 C 1.36940 * 120.00348 * 138.56919 * 17 15 14 19 19 H 1.08002 * 119.99318 * 0.02562 * 18 17 15 20 20 C 1.38807 * 120.00122 * 180.02562 * 18 17 15 21 21 N 1.31622 * 120.00015 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99921 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47099 * 90.00288 * 22 20 18 24 24 H 1.48505 * 109.46877 * 209.99723 * 22 20 18 25 25 H 1.48496 * 109.47016 * 329.99567 * 22 20 18 26 26 C 1.53557 * 106.03596 * 330.43969 * 15 14 13 27 27 H 1.09001 * 111.66195 * 254.94726 * 26 15 14 28 28 C 1.48355 * 128.19518 * 180.02562 * 9 7 6 29 29 C 1.39515 * 118.88149 * 0.02562 * 6 4 3 30 30 C 1.50705 * 119.71468 * 179.97438 * 29 6 4 31 31 N 1.31693 * 120.57063 * 0.02562 * 29 6 4 32 32 H 1.09003 * 109.46778 * 270.02033 * 1 2 3 33 33 H 1.09004 * 109.47309 * 30.01617 * 1 2 3 34 34 H 1.08999 * 109.47335 * 150.02247 * 1 2 3 35 35 H 1.07995 * 120.34572 * 359.97438 * 3 2 1 36 36 H 1.08995 * 109.47110 * 269.95424 * 5 4 3 37 37 H 1.08998 * 109.47275 * 29.95693 * 5 4 3 38 38 H 1.08999 * 109.47039 * 149.95157 * 5 4 3 39 39 H 1.08996 * 110.47395 * 257.00360 * 10 9 7 40 40 H 1.09004 * 110.46767 * 19.60534 * 10 9 7 41 41 H 1.08999 * 109.75111 * 109.96229 * 13 11 10 42 42 H 1.09004 * 110.50203 * 348.33443 * 13 11 10 43 43 H 1.08999 * 110.35649 * 271.12302 * 14 13 11 44 44 H 1.09002 * 110.44608 * 148.87122 * 14 13 11 45 45 H 0.97000 * 119.99566 * 318.57421 * 17 15 14 46 46 H 0.96997 * 119.99599 * 180.02562 * 21 20 18 47 47 H 1.08995 * 110.46955 * 340.39650 * 28 9 7 48 48 H 1.08994 * 110.47205 * 102.99968 * 28 9 7 49 49 H 1.09004 * 109.47129 * 90.00084 * 30 29 6 50 50 H 1.08997 * 109.47214 * 210.00164 * 30 29 6 51 51 H 1.08995 * 109.47074 * 329.99726 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.2047 0.0000 4 6 3.5710 1.2008 -0.0005 5 6 4.3474 2.4924 -0.0011 6 6 4.2312 -0.0340 0.0003 7 6 5.7082 -0.0966 0.0064 8 8 6.3196 -0.1258 -1.0438 9 7 6.3769 -0.1213 1.1764 10 6 5.8211 -0.0868 2.5514 11 6 6.6711 -1.1239 3.3272 12 1 6.1920 -2.1015 3.3798 13 6 7.0086 -0.5539 4.7336 14 6 8.5238 -0.7510 4.9223 15 6 9.1127 -0.6728 3.5020 16 1 9.9967 -1.3058 3.4257 17 7 9.4557 0.7131 3.1737 18 6 10.6219 0.9917 2.5121 19 1 11.2886 0.1895 2.2321 20 6 10.9470 2.3049 2.2016 21 7 12.0677 2.5726 1.5653 22 14 9.7941 3.6923 2.6866 23 1 10.1544 4.1849 4.0404 24 1 9.9157 4.8022 1.7075 25 1 8.3957 3.1929 2.6975 26 6 8.0139 -1.1832 2.5585 27 1 8.2288 -2.1891 2.1976 28 6 7.8431 -0.1823 1.3938 29 6 3.4716 -1.2042 0.0012 30 6 4.1627 -2.5435 0.0015 31 7 2.1558 -1.1487 0.0006 32 1 -0.3633 0.0004 1.0277 33 1 -0.3634 0.8899 -0.5141 34 1 -0.3634 -0.8902 -0.5135 35 1 1.6443 2.1381 -0.0004 36 1 4.5349 2.8031 -1.0289 37 1 3.7718 3.2626 0.5121 38 1 5.2972 2.3456 0.5131 39 1 5.9380 0.9063 2.9850 40 1 4.7713 -0.3802 2.5457 41 1 6.4604 -1.1069 5.4964 42 1 6.7584 0.5057 4.7862 43 1 8.7272 -1.7266 5.3639 44 1 8.9358 0.0410 5.5477 45 1 8.8566 1.4335 3.4250 46 1 12.2950 3.4903 1.3486 47 1 8.3462 -0.5489 0.4991 48 1 8.2281 0.7982 1.6740 49 1 4.3297 -2.8659 1.0293 50 1 3.5383 -3.2747 -0.5117 51 1 5.1199 -2.4585 -0.5127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026316454.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:10 Heat of formation + Delta-G solvation = 17.078611 kcal Electronic energy + Delta-G solvation = -31615.389307 eV Core-core repulsion = 27707.739163 eV Total energy + Delta-G solvation = -3907.650144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.02464 -39.88230 -38.22509 -35.10909 -34.39909 -33.89693 -33.45643 -31.20972 -29.74710 -29.15446 -28.65577 -27.97993 -27.32612 -25.36374 -23.98441 -22.88822 -22.17175 -21.24141 -20.01462 -19.33433 -18.74837 -17.83368 -17.29953 -17.14556 -16.05784 -15.52809 -15.27076 -15.18047 -14.89797 -14.41367 -14.20252 -14.01633 -13.68553 -13.49071 -13.46706 -13.19869 -13.09754 -12.96650 -12.92411 -12.67613 -12.48531 -12.43436 -12.18910 -12.00268 -11.96030 -11.76789 -11.73797 -11.16247 -10.96637 -10.85896 -10.59584 -10.41044 -10.32735 -10.23078 -10.05224 -10.02781 -9.65116 -9.62937 -9.44851 -9.08512 -8.93321 -8.43782 -7.30658 -5.84528 -3.21611 0.72807 1.00982 2.68490 3.10171 3.27579 3.31259 3.39172 3.44743 3.93773 4.33751 4.36068 4.45873 4.50070 4.63237 4.81931 4.84690 4.89489 5.10331 5.18009 5.18530 5.27419 5.29132 5.32919 5.37412 5.40530 5.44275 5.45416 5.46677 5.48750 5.60618 5.63312 5.71699 5.82723 5.85844 5.88604 5.91148 5.95613 5.95797 6.01823 6.06646 6.16336 6.22648 6.37979 6.40346 6.46990 6.53391 6.70001 6.75595 6.95539 7.72594 7.79197 7.91969 8.28035 8.34719 9.11222 9.82926 10.01143 11.33524 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013412 B = 0.003727 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.167620 B = 7510.796025 C = 8293.570033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.142 3.858 3 C -0.183 4.183 4 C -0.001 4.001 5 C -0.125 4.125 6 C -0.175 4.175 7 C 0.585 3.415 8 O -0.533 6.533 9 N -0.615 5.615 10 C 0.109 3.891 11 C -0.100 4.100 12 H 0.082 0.918 13 C -0.113 4.113 14 C -0.136 4.136 15 C 0.184 3.816 16 H 0.073 0.927 17 N -0.736 5.736 18 C -0.251 4.251 19 H 0.093 0.907 20 C 0.010 3.990 21 N -0.928 5.928 22 Si 0.878 3.122 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.278 1.278 26 C -0.123 4.123 27 H 0.076 0.924 28 C 0.105 3.895 29 C 0.172 3.828 30 C -0.109 4.109 31 N -0.489 5.489 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.361 0.639 46 H 0.260 0.740 47 H 0.074 0.926 48 H 0.119 0.881 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.197 -6.105 3.059 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.005 3.995 3 C -0.203 4.203 4 C -0.009 4.009 5 C -0.182 4.182 6 C -0.180 4.180 7 C 0.372 3.628 8 O -0.410 6.410 9 N -0.348 5.348 10 C -0.015 4.015 11 C -0.119 4.119 12 H 0.101 0.899 13 C -0.151 4.151 14 C -0.175 4.175 15 C 0.073 3.927 16 H 0.091 0.909 17 N -0.377 5.377 18 C -0.380 4.380 19 H 0.111 0.889 20 C -0.186 4.186 21 N -0.575 5.575 22 Si 0.708 3.292 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.145 4.145 27 H 0.095 0.905 28 C -0.016 4.016 29 C 0.034 3.966 30 C -0.167 4.167 31 N -0.200 5.200 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.156 0.844 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.195 0.805 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.136 0.864 49 H 0.101 0.899 50 H 0.101 0.899 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -22.116 -6.864 2.255 23.266 hybrid contribution -0.370 1.957 0.278 2.011 sum -22.486 -4.907 2.533 23.154 Atomic orbital electron populations 1.20732 0.88572 1.03575 1.03193 1.21375 0.97041 0.88094 0.92992 1.21733 0.93579 0.99483 1.05514 1.20346 0.93772 0.94537 0.92200 1.20937 1.00217 0.93271 1.03756 1.20679 0.94630 0.94539 1.08146 1.17502 0.85812 0.76686 0.82791 1.90828 1.68959 1.50600 1.30635 1.49301 1.09677 1.71088 1.04687 1.22700 0.97411 0.99501 0.81857 1.22980 0.96234 0.97785 0.94937 0.89934 1.22442 0.97018 1.00461 0.95226 1.22616 0.94484 1.01521 0.98844 1.20672 0.94822 0.86966 0.90245 0.90897 1.42899 1.23652 1.02044 1.69125 1.19107 0.96070 0.93788 1.29051 0.88906 1.24666 0.96900 0.96809 1.00230 1.69683 1.23698 1.19063 1.45018 0.86677 0.80804 0.83498 0.78186 1.21008 1.21668 1.20442 1.23233 0.95524 0.98916 0.96826 0.90542 1.23156 0.77207 1.03406 0.97824 1.21254 0.88810 0.94594 0.91992 1.20805 1.00252 0.92122 1.03489 1.67360 1.08783 1.29105 1.14745 0.90220 0.90594 0.90331 0.84367 0.89682 0.90390 0.90648 0.90837 0.91483 0.92238 0.91808 0.91810 0.91000 0.80523 0.92932 0.90715 0.86362 0.89918 0.89916 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.16 36.00 0.37 -0.38 16 2 C 0.14 1.56 6.78 -82.51 -0.56 1.00 16 3 C -0.18 -1.96 9.43 -39.49 -0.37 -2.33 16 4 C 0.00 -0.01 5.95 -103.91 -0.62 -0.63 16 5 C -0.13 -1.52 9.69 36.00 0.35 -1.17 16 6 C -0.17 -2.59 4.57 -104.83 -0.48 -3.06 16 7 C 0.59 10.17 4.46 -12.33 -0.05 10.11 16 8 O -0.53 -11.37 17.39 5.32 0.09 -11.27 16 9 N -0.61 -10.01 3.31 -169.68 -0.56 -10.57 16 10 C 0.11 1.44 6.48 -2.01 -0.01 1.43 16 11 C -0.10 -1.25 4.06 -87.33 -0.35 -1.60 16 12 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 13 C -0.11 -1.35 6.41 -24.93 -0.16 -1.51 16 14 C -0.14 -1.86 6.49 -25.74 -0.17 -2.02 16 15 C 0.18 3.11 3.53 -67.14 -0.24 2.88 16 16 H 0.07 1.30 7.91 -51.93 -0.41 0.89 16 17 N -0.74 -15.50 2.69 -52.66 -0.14 -15.64 16 18 C -0.25 -6.54 9.92 -15.06 -0.15 -6.69 16 19 H 0.09 2.63 7.97 -52.49 -0.42 2.21 16 20 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 21 N -0.93 -28.30 13.97 55.49 0.78 -27.52 16 22 Si 0.88 21.15 27.74 -169.99 -4.71 16.44 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.19 6.52 56.52 0.37 -5.82 16 26 C -0.12 -1.88 3.88 -88.56 -0.34 -2.23 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 C 0.10 1.93 6.24 -2.22 -0.01 1.92 16 29 C 0.17 2.36 6.82 -82.17 -0.56 1.80 16 30 C -0.11 -1.31 9.78 36.01 0.35 -0.95 16 31 N -0.49 -6.37 10.17 -5.42 -0.06 -6.42 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.07 1.07 7.18 -51.93 -0.37 0.70 16 39 H 0.07 0.99 7.25 -51.93 -0.38 0.62 16 40 H 0.07 0.81 7.43 -51.93 -0.39 0.42 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.78 7.20 -51.93 -0.37 0.41 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 45 H 0.36 7.58 5.49 -40.82 -0.22 7.36 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 47 H 0.07 1.54 7.88 -51.93 -0.41 1.13 16 48 H 0.12 2.52 5.22 -51.93 -0.27 2.24 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 51 H 0.08 1.06 7.07 -51.93 -0.37 0.70 16 LS Contribution 400.67 15.07 6.04 6.04 Total: -1.00 -32.38 400.67 -9.95 -42.32 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -8.27 Total: 9.87 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -3.11 Total: -3.23 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.02 Total: -60.16 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.71 Total: 16.44 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.38 -9.95 -42.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026316454.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.401 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds