Wall clock time and date at job start Wed Apr 1 2020 02:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38672 * 120.78834 * 2 1 4 4 C 1.38176 * 119.16443 * 180.02562 * 3 2 1 5 5 N 1.31891 * 120.76352 * 359.74534 * 4 3 2 6 6 C 1.31853 * 121.72468 * 0.52463 * 5 4 3 7 7 C 1.50698 * 119.61613 * 179.75552 * 6 5 4 8 8 C 1.53000 * 109.46910 * 224.72444 * 7 6 5 9 9 C 1.52999 * 109.47205 * 104.72301 * 7 6 5 10 10 C 1.50697 * 109.47154 * 344.72208 * 7 6 5 11 11 O 1.21284 * 120.00363 * 239.50248 * 10 7 6 12 12 N 1.34780 * 120.00212 * 59.50557 * 10 7 6 13 13 C 1.47158 * 120.70633 * 354.80684 * 12 10 7 14 14 C 1.53890 * 108.02725 * 132.73572 * 13 12 10 15 15 H 1.09006 * 112.09712 * 181.90728 * 14 13 12 16 16 C 1.54543 * 107.83390 * 306.50731 * 14 13 12 17 17 C 1.54421 * 104.82051 * 89.12801 * 16 14 13 18 18 C 1.54547 * 104.85295 * 359.92475 * 17 16 14 19 19 H 1.09010 * 112.68093 * 146.77134 * 18 17 16 20 20 C 1.47160 * 120.71014 * 174.79452 * 12 10 7 21 21 N 1.48308 * 104.31568 * 24.76382 * 18 17 16 22 22 C 1.36942 * 128.03006 * 139.02967 * 21 18 17 23 23 H 1.08002 * 120.00390 * 196.89544 * 22 21 18 24 24 C 1.38814 * 120.00097 * 16.90015 * 22 21 18 25 25 N 1.31621 * 119.99657 * 9.94177 * 24 22 21 26 26 Si 1.86793 * 120.00180 * 189.94769 * 24 22 21 27 27 H 1.48497 * 109.47404 * 94.97159 * 26 24 22 28 28 H 1.48503 * 109.47282 * 214.97148 * 26 24 22 29 29 H 1.48501 * 109.47238 * 334.96953 * 26 24 22 30 30 C 1.38229 * 120.76285 * 359.47143 * 6 5 4 31 31 H 1.09006 * 109.47365 * 269.97570 * 1 2 3 32 32 H 1.08996 * 109.47339 * 29.98499 * 1 2 3 33 33 H 1.09007 * 109.46703 * 149.97872 * 1 2 3 34 34 H 1.07999 * 120.41538 * 359.97438 * 3 2 1 35 35 H 1.08007 * 119.61826 * 179.97438 * 4 3 2 36 36 H 1.09003 * 109.47358 * 178.83087 * 8 7 6 37 37 H 1.08995 * 109.47069 * 298.82866 * 8 7 6 38 38 H 1.08995 * 109.47336 * 58.83208 * 8 7 6 39 39 H 1.08996 * 109.47411 * 300.84812 * 9 7 6 40 40 H 1.08997 * 109.47285 * 60.85315 * 9 7 6 41 41 H 1.09006 * 109.46794 * 180.85121 * 9 7 6 42 42 H 1.08994 * 109.75762 * 252.37311 * 13 12 10 43 43 H 1.09005 * 109.75121 * 13.11132 * 13 12 10 44 44 H 1.08996 * 110.36337 * 207.91471 * 16 14 13 45 45 H 1.09002 * 110.36029 * 330.22934 * 16 14 13 46 46 H 1.09000 * 110.29205 * 241.11582 * 17 16 14 47 47 H 1.09000 * 110.52417 * 118.85309 * 17 16 14 48 48 H 1.08993 * 109.75199 * 346.89065 * 20 12 10 49 49 H 1.09003 * 109.75143 * 107.58075 * 20 12 10 50 50 H 0.96997 * 119.99739 * 180.02562 * 25 24 22 51 51 H 1.08000 * 120.41844 * 180.27710 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1913 0.0000 4 6 3.5980 1.1521 -0.0005 5 7 4.2403 0.0001 0.0040 6 6 3.5983 -1.1516 -0.0011 7 6 4.3801 -2.4399 -0.0012 8 6 3.7723 -3.4052 -1.0208 9 6 4.3260 -3.0693 1.3923 10 6 5.8138 -2.1575 -0.3695 11 8 6.3042 -2.6842 -1.3457 12 7 6.5512 -1.3196 0.3860 13 6 5.9422 -0.5847 1.5060 14 6 6.8626 -0.7339 2.7302 15 1 6.4554 -0.2394 3.6122 16 6 7.1111 -2.2427 2.9544 17 6 8.3573 -2.5686 2.1026 18 6 8.7463 -1.2274 1.4404 19 1 9.8228 -1.1220 1.3054 20 6 7.9827 -1.1204 0.1086 21 7 8.1907 -0.1952 2.3489 22 6 8.7697 0.9814 2.7434 23 1 8.3889 1.5083 3.6059 24 6 9.8461 1.4972 2.0346 25 7 10.1869 0.9684 0.8785 26 14 10.8111 2.9414 2.7217 27 1 11.9952 2.4379 3.4631 28 1 11.2595 3.8129 1.6061 29 1 9.9458 3.7218 3.6424 30 6 2.2166 -1.1909 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8901 -0.5136 33 1 -0.3633 -0.8899 -0.5142 34 1 1.6966 2.1377 -0.0004 35 1 4.1582 2.0756 -0.0010 36 1 4.3502 -4.3293 -1.0358 37 1 2.7417 -3.6257 -0.7428 38 1 3.7919 -2.9484 -2.0102 39 1 4.7453 -2.3756 2.1209 40 1 3.2903 -3.2876 1.6525 41 1 4.9041 -3.9935 1.3962 42 1 5.8440 0.4691 1.2453 43 1 4.9606 -1.0023 1.7302 44 1 7.3095 -2.4421 4.0074 45 1 6.2542 -2.8231 2.6124 46 1 8.1121 -3.3100 1.3421 47 1 9.1688 -2.9289 2.7348 48 1 8.3347 -1.8881 -0.5804 49 1 8.1396 -0.1339 -0.3277 50 1 10.9393 1.3285 0.3834 51 1 1.6965 -2.1374 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029356512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:39 Heat of formation + Delta-G solvation = 68.050481 kcal Electronic energy + Delta-G solvation = -32975.786366 eV Core-core repulsion = 29070.346528 eV Total energy + Delta-G solvation = -3905.439838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.21916 -39.50992 -37.83105 -35.34858 -34.03834 -33.36749 -32.23453 -30.59295 -30.11543 -29.24361 -27.95590 -27.16123 -26.22946 -24.61062 -23.66332 -23.35123 -22.33488 -21.35009 -19.57595 -19.17206 -18.34011 -17.18488 -16.54741 -16.36771 -15.78822 -15.27378 -15.16620 -14.72476 -14.69305 -14.41219 -14.16688 -13.72937 -13.57608 -13.19415 -13.02342 -12.82001 -12.78263 -12.72257 -12.60025 -12.32061 -12.18451 -12.08677 -11.76010 -11.63424 -11.46710 -11.32838 -11.21393 -11.07097 -10.86326 -10.77493 -10.41419 -10.24531 -9.93976 -9.73695 -9.72332 -9.48937 -9.46365 -9.02956 -8.95260 -8.83794 -8.64105 -7.75245 -6.67890 -5.77299 -3.11640 1.09237 1.24889 3.28252 3.39074 3.44745 3.46740 3.73307 3.86408 4.21334 4.46335 4.48732 4.64439 4.86225 4.99244 5.02760 5.09734 5.16228 5.27411 5.29278 5.30313 5.40403 5.46117 5.58809 5.65214 5.70887 5.73914 5.77141 5.80885 5.84207 5.87338 5.90469 6.01306 6.04806 6.11450 6.14427 6.23847 6.29122 6.44266 6.51634 6.60909 6.64891 6.71759 6.82872 6.89587 6.95642 7.02980 7.23910 7.45071 7.60697 7.79802 8.05552 8.22423 8.38757 8.95765 9.13037 9.75392 10.54395 11.36070 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013560 B = 0.004303 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.466584 B = 6505.690911 C = 7539.853551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.047 4.047 3 C -0.178 4.178 4 C 0.105 3.895 5 N -0.459 5.459 6 C 0.140 3.860 7 C -0.034 4.034 8 C -0.121 4.121 9 C -0.157 4.157 10 C 0.527 3.473 11 O -0.567 6.567 12 N -0.565 5.565 13 C 0.114 3.886 14 C 0.123 3.877 15 H 0.071 0.929 16 C -0.135 4.135 17 C -0.135 4.135 18 C 0.170 3.830 19 H 0.113 0.887 20 C 0.114 3.886 21 N -0.582 5.582 22 C -0.225 4.225 23 H 0.074 0.926 24 C -0.002 4.002 25 N -0.910 5.910 26 Si 0.909 3.091 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.281 1.281 30 C -0.166 4.166 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.157 0.843 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.063 0.937 49 H 0.079 0.921 50 H 0.254 0.746 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.906 -5.227 0.553 19.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.197 4.197 4 C -0.051 4.051 5 N -0.168 5.168 6 C 0.003 3.997 7 C -0.038 4.038 8 C -0.179 4.179 9 C -0.214 4.214 10 C 0.313 3.687 11 O -0.448 6.448 12 N -0.293 5.293 13 C -0.012 4.012 14 C 0.014 3.986 15 H 0.089 0.911 16 C -0.174 4.174 17 C -0.174 4.174 18 C 0.063 3.937 19 H 0.130 0.870 20 C -0.010 4.010 21 N -0.303 5.303 22 C -0.353 4.353 23 H 0.092 0.908 24 C -0.199 4.199 25 N -0.556 5.556 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 C -0.186 4.186 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.149 0.851 35 H 0.174 0.826 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.097 0.903 50 H 0.064 0.936 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.513 -5.255 0.007 18.284 hybrid contribution -0.452 1.020 0.278 1.150 sum -17.965 -4.236 0.285 18.460 Atomic orbital electron populations 1.20796 0.90437 1.03106 1.02710 1.20251 0.96523 0.92939 0.95807 1.22011 0.95689 0.98475 1.03573 1.22837 0.91629 0.96379 0.94304 1.68183 1.39927 0.97925 1.10716 1.20921 0.90745 0.93031 0.95038 1.19738 0.93571 0.92083 0.98418 1.21662 0.99521 0.98719 0.98012 1.22396 1.02764 1.01877 0.94361 1.19775 0.86626 0.79388 0.82915 1.90618 1.72930 1.53631 1.27582 1.47836 1.10290 1.40960 1.30247 1.22801 0.94550 0.97237 0.86569 1.22201 0.88727 0.92646 0.95032 0.91088 1.22746 0.98145 0.97520 0.98952 1.22625 0.96929 0.99286 0.98546 1.21822 0.99243 0.84844 0.87832 0.86955 1.22399 0.77803 1.01736 0.99028 1.45121 1.12317 1.19072 1.53837 1.18971 1.11564 0.97224 1.07553 0.90839 1.24838 1.00543 0.98748 0.95790 1.69870 1.29451 1.43284 1.12965 0.86151 0.80154 0.81928 0.77767 1.21722 1.21829 1.20703 1.21711 0.94460 0.98679 1.03722 0.90652 0.91179 0.91197 0.85086 0.82571 0.91081 0.92219 0.91935 0.89321 0.91698 0.91117 0.90683 0.91538 0.93013 0.92024 0.93027 0.93019 0.91890 0.90254 0.93602 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.06 36.01 0.36 -0.41 16 2 C -0.05 -0.48 5.92 -104.32 -0.62 -1.09 16 3 C -0.18 -1.91 9.82 -39.44 -0.39 -2.29 16 4 C 0.11 1.42 10.96 -17.55 -0.19 1.23 16 5 N -0.46 -7.37 5.06 -9.47 -0.05 -7.42 16 6 C 0.14 2.00 4.52 -82.59 -0.37 1.62 16 7 C -0.03 -0.50 0.60 -156.81 -0.09 -0.60 16 8 C -0.12 -1.56 7.35 37.16 0.27 -1.29 16 9 C -0.16 -1.94 6.96 37.16 0.26 -1.69 16 10 C 0.53 10.28 6.12 -10.99 -0.07 10.21 16 11 O -0.57 -12.85 15.48 5.55 0.09 -12.76 16 12 N -0.56 -11.45 2.06 -171.53 -0.35 -11.80 16 13 C 0.11 2.13 3.32 -3.22 -0.01 2.12 16 14 C 0.12 2.45 4.30 -65.66 -0.28 2.16 16 15 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 16 C -0.13 -2.41 6.11 -25.18 -0.15 -2.56 16 17 C -0.13 -2.68 6.19 -25.17 -0.16 -2.83 16 18 C 0.17 3.98 3.12 -65.66 -0.21 3.78 16 19 H 0.11 2.97 6.49 -51.92 -0.34 2.64 16 20 C 0.11 2.64 5.76 -3.22 -0.02 2.63 16 21 N -0.58 -14.10 2.80 -152.59 -0.43 -14.53 16 22 C -0.22 -5.97 10.36 -15.06 -0.16 -6.13 16 23 H 0.07 1.91 7.85 -52.49 -0.41 1.50 16 24 C 0.00 -0.05 5.40 -17.43 -0.09 -0.14 16 25 N -0.91 -25.53 10.35 55.49 0.57 -24.95 16 26 Si 0.91 21.53 29.56 -169.99 -5.03 16.51 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 C -0.17 -1.87 8.80 -39.44 -0.35 -2.22 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 33 H 0.07 0.41 8.10 -51.92 -0.42 -0.01 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.16 1.94 8.06 -52.48 -0.42 1.52 16 36 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.06 0.57 6.75 -51.93 -0.35 0.22 16 38 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 39 H 0.09 1.20 3.18 -51.93 -0.17 1.04 16 40 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 41 H 0.07 0.86 7.97 -51.93 -0.41 0.45 16 42 H 0.08 1.58 6.76 -51.93 -0.35 1.23 16 43 H 0.07 1.10 2.92 -51.93 -0.15 0.95 16 44 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.98 4.43 -51.93 -0.23 0.75 16 46 H 0.05 1.00 7.84 -51.93 -0.41 0.60 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.06 1.49 7.16 -51.93 -0.37 1.12 16 49 H 0.08 2.12 7.66 -51.93 -0.40 1.73 16 50 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.13 1.18 6.75 -52.49 -0.35 0.83 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -31.52 375.57 -9.51 -41.03 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -7.72 Total: 5.75 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.26 Total: 2.51 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.25 Total: -58.69 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.52 -9.51 -41.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029356512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.081 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds