Wall clock time and date at job start Wed Apr 1 2020 01:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38354 * 119.46199 * 2 1 4 4 C 1.38352 * 119.30152 * 179.69952 * 3 2 1 5 5 C 1.40026 * 118.29210 * 0.53916 * 4 3 2 6 6 C 1.47836 * 120.56229 * 179.73437 * 5 4 3 7 7 O 1.21554 * 119.99737 * 128.97720 * 6 5 4 8 8 N 1.34774 * 120.00104 * 308.70638 * 6 5 4 9 9 C 1.47161 * 120.71220 * 175.17275 * 8 6 5 10 10 C 1.53883 * 108.03239 * 132.75727 * 9 8 6 11 11 H 1.09001 * 112.09754 * 181.91075 * 10 9 8 12 12 C 1.54546 * 107.82759 * 306.50102 * 10 9 8 13 13 C 1.54280 * 104.85001 * 89.07732 * 12 10 9 14 14 C 1.54549 * 104.84769 * 359.97438 * 13 12 10 15 15 H 1.09002 * 112.17724 * 146.40954 * 14 13 12 16 16 C 1.47171 * 120.70668 * 354.89029 * 8 6 5 17 17 N 1.48306 * 104.35623 * 24.70586 * 14 13 12 18 18 C 1.36939 * 128.07722 * 139.07593 * 17 14 13 19 19 H 1.08001 * 119.99959 * 194.79380 * 18 17 14 20 20 C 1.38812 * 119.99894 * 14.79908 * 18 17 14 21 21 N 1.31612 * 119.99935 * 9.29732 * 20 18 17 22 22 Si 1.86801 * 119.99665 * 189.30269 * 20 18 17 23 23 H 1.48496 * 109.47244 * 89.99987 * 22 20 18 24 24 H 1.48503 * 109.46755 * 209.99676 * 22 20 18 25 25 H 1.48497 * 109.47227 * 329.99766 * 22 20 18 26 26 C 1.39522 * 118.87647 * 359.46428 * 5 4 3 27 27 C 1.50696 * 119.71424 * 180.29528 * 26 5 4 28 28 C 1.53000 * 109.46996 * 112.01912 * 27 26 5 29 29 C 1.53000 * 109.47554 * 232.01790 * 27 26 5 30 30 N 1.31696 * 120.56763 * 0.27087 * 26 5 4 31 31 H 1.08999 * 109.47523 * 270.02293 * 1 2 3 32 32 H 1.09004 * 109.47203 * 30.02153 * 1 2 3 33 33 H 1.08998 * 109.47618 * 150.02009 * 1 2 3 34 34 H 1.07999 * 120.34351 * 359.97438 * 3 2 1 35 35 H 1.08009 * 120.85359 * 180.27392 * 4 3 2 36 36 H 1.09008 * 109.74642 * 252.38881 * 9 8 6 37 37 H 1.09000 * 109.74742 * 13.06908 * 9 8 6 38 38 H 1.08999 * 110.36555 * 207.91995 * 12 10 9 39 39 H 1.09000 * 110.36610 * 330.23462 * 12 10 9 40 40 H 1.09008 * 110.36041 * 241.15466 * 13 12 10 41 41 H 1.09002 * 110.36536 * 118.84091 * 13 12 10 42 42 H 1.08997 * 109.74871 * 346.87755 * 16 8 6 43 43 H 1.08994 * 109.74899 * 107.61357 * 16 8 6 44 44 H 0.97005 * 120.00006 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47570 * 352.02299 * 27 26 5 46 46 H 1.09005 * 109.47444 * 60.00181 * 28 27 26 47 47 H 1.09004 * 109.47413 * 180.02562 * 28 27 26 48 48 H 1.09000 * 109.47396 * 300.00099 * 28 27 26 49 49 H 1.08998 * 109.46678 * 59.99506 * 29 27 26 50 50 H 1.09000 * 109.47605 * 180.02562 * 29 27 26 51 51 H 1.09009 * 109.46918 * 300.00640 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0063 5 6 4.2312 -0.0340 0.0009 6 6 5.7083 -0.0967 0.0014 7 8 6.2870 -0.7878 0.8168 8 7 6.4129 0.6082 -0.9058 9 6 7.8833 0.6416 -0.8543 10 6 8.4157 0.3800 -2.2742 11 1 9.5050 0.3572 -2.3060 12 6 7.7770 -0.9314 -2.7849 13 6 6.4633 -0.4929 -3.4647 14 6 6.4272 1.0436 -3.3025 15 1 5.9524 1.5359 -4.1512 16 6 5.7286 1.3559 -1.9728 17 7 7.8510 1.4314 -3.1544 18 6 8.4943 2.5087 -3.7027 19 1 9.5736 2.5456 -3.7124 20 6 7.7592 3.5533 -4.2461 21 7 6.4552 3.5996 -4.0739 22 14 8.6208 4.8932 -5.2216 23 1 8.6676 4.5094 -6.6554 24 1 7.8754 6.1693 -5.0750 25 1 10.0041 5.0663 -4.7101 26 6 3.4716 -1.2043 0.0009 27 6 4.1626 -2.5435 0.0018 28 6 3.9150 -3.2442 1.3392 29 6 3.6085 -3.4043 -1.1351 30 7 2.1558 -1.1487 0.0004 31 1 -0.3634 0.0004 1.0276 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6443 2.1381 -0.0004 35 1 4.1275 2.1264 0.0109 36 1 8.2176 1.6203 -0.5101 37 1 8.2457 -0.1309 -0.1761 38 1 8.4337 -1.4172 -3.5066 39 1 7.5673 -1.6011 -1.9509 40 1 5.6077 -0.9471 -2.9648 41 1 6.4741 -0.7630 -4.5207 42 1 4.6840 1.0494 -2.0257 43 1 5.7896 2.4252 -1.7706 44 1 5.9415 4.3298 -4.4533 45 1 5.2337 -2.3998 -0.1401 46 1 2.8439 -3.3880 1.4813 47 1 4.4152 -4.2126 1.3402 48 1 4.3098 -2.6310 2.1493 49 1 3.7848 -2.9051 -2.0879 50 1 4.1080 -4.3731 -1.1342 51 1 2.5373 -3.5480 -0.9931 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029412013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:59 Heat of formation + Delta-G solvation = 13.763573 kcal Electronic energy + Delta-G solvation = -32356.280960 eV Core-core repulsion = 28448.487065 eV Total energy + Delta-G solvation = -3907.793895 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.21332 -40.96799 -39.24783 -36.66214 -35.47766 -34.52865 -33.72394 -32.35748 -32.21014 -31.07301 -29.22658 -28.03222 -27.68712 -25.80728 -25.49110 -24.85557 -23.68282 -21.67732 -21.41892 -21.22992 -20.37864 -19.01250 -17.94623 -17.53970 -17.16257 -16.84687 -16.67874 -16.47447 -15.65197 -15.54968 -15.44223 -15.14851 -14.90045 -14.75241 -14.57809 -14.44820 -14.13475 -14.10916 -13.58453 -13.47740 -13.34781 -13.33129 -13.15083 -12.99099 -12.94728 -12.84908 -12.72742 -12.58685 -12.29925 -12.09436 -12.00612 -11.87237 -11.78317 -11.53141 -11.47757 -11.17584 -11.11619 -10.83368 -10.65934 -10.39708 -9.85578 -9.71669 -8.73013 -7.85854 -5.20700 -0.23163 0.18746 1.49570 1.51558 1.58176 1.61186 2.01646 2.50829 2.68120 3.11182 3.33656 3.39221 3.47265 3.62212 3.72773 4.02129 4.06944 4.07258 4.17966 4.19163 4.24635 4.29022 4.30591 4.34974 4.39123 4.52559 4.68144 4.69576 4.75370 4.77734 4.80800 4.83616 4.86566 4.93939 4.95799 5.00384 5.02484 5.03983 5.08683 5.10940 5.13883 5.19491 5.29465 5.31487 5.34057 5.42321 5.52193 5.58213 5.68604 5.78272 6.21191 6.45234 6.91905 7.06919 7.08138 7.71270 8.50345 9.25914 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.003964 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.721835 B = 7062.254493 C = 8088.014017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.140 3.860 3 C -0.177 4.177 4 C -0.044 4.044 5 C -0.201 4.201 6 C 0.562 3.438 7 O -0.571 6.571 8 N -0.583 5.583 9 C 0.107 3.893 10 C 0.131 3.869 11 H 0.088 0.912 12 C -0.112 4.112 13 C -0.126 4.126 14 C 0.164 3.836 15 H 0.088 0.912 16 C 0.127 3.873 17 N -0.602 5.602 18 C -0.235 4.235 19 H 0.077 0.923 20 C -0.048 4.048 21 N -0.934 5.934 22 Si 0.969 3.031 23 H -0.290 1.290 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.180 3.820 27 C -0.054 4.054 28 C -0.124 4.124 29 C -0.130 4.130 30 N -0.491 5.491 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.170 0.830 35 H 0.136 0.864 36 H 0.048 0.952 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.249 0.751 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.038 0.962 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.663 -9.060 6.874 15.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.002 3.998 3 C -0.197 4.197 4 C -0.070 4.070 5 C -0.206 4.206 6 C 0.351 3.649 7 O -0.452 6.452 8 N -0.314 5.314 9 C -0.018 4.018 10 C 0.023 3.977 11 H 0.106 0.894 12 C -0.151 4.151 13 C -0.166 4.166 14 C 0.057 3.943 15 H 0.106 0.894 16 C 0.003 3.997 17 N -0.324 5.324 18 C -0.364 4.364 19 H 0.094 0.906 20 C -0.242 4.242 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.218 1.218 24 H -0.223 1.223 25 H -0.200 1.200 26 C 0.041 3.959 27 C -0.073 4.073 28 C -0.181 4.181 29 C -0.188 4.188 30 N -0.201 5.201 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.188 0.812 35 H 0.154 0.846 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.093 0.907 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.825 -9.918 7.157 16.333 hybrid contribution 1.193 2.163 -0.523 2.525 sum -9.632 -7.755 6.634 14.033 Atomic orbital electron populations 1.20851 0.85704 1.04795 1.04376 1.22122 0.98937 0.87733 0.90994 1.22202 0.93478 1.00914 1.03055 1.21878 0.95750 0.96733 0.92612 1.20720 0.93746 0.96095 1.10036 1.18332 0.87029 0.78991 0.80563 1.90691 1.71887 1.42092 1.40568 1.48124 1.07192 1.47794 1.28271 1.22297 0.79172 1.00858 0.99457 1.22145 0.97546 0.89344 0.88628 0.89379 1.22372 0.96679 0.96515 0.99515 1.22532 0.97319 0.97011 0.99693 1.21690 0.85965 0.91326 0.95319 0.89394 1.22170 0.94917 0.94765 0.87846 1.45336 1.06736 1.25971 1.54363 1.19283 0.90979 0.95045 1.31056 0.90560 1.25423 0.96574 0.99407 1.02845 1.69967 1.05745 1.33346 1.49053 0.85233 0.77759 0.78594 0.78578 1.21771 1.22342 1.20025 1.21348 0.89207 0.94340 0.90986 1.20246 0.98773 0.90024 0.98302 1.21613 1.02103 1.00065 0.94368 1.21708 1.01989 0.99167 0.95915 1.67375 1.08191 1.29870 1.14628 0.88750 0.88333 0.90226 0.81236 0.84607 0.93357 0.89544 0.91286 0.91858 0.92527 0.92411 0.91064 0.92992 0.94143 0.90849 0.91680 0.90646 0.94268 0.93923 0.90698 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.16 71.24 0.72 -0.69 16 2 C 0.14 3.20 6.78 42.57 0.29 3.49 16 3 C -0.18 -4.05 9.72 22.32 0.22 -3.83 16 4 C -0.04 -1.26 7.93 22.73 0.18 -1.08 16 5 C -0.20 -6.61 4.68 -19.99 -0.09 -6.71 16 6 C 0.56 20.91 6.34 86.78 0.55 21.46 16 7 O -0.57 -23.24 14.80 -3.89 -0.06 -23.30 16 8 N -0.58 -22.23 2.26 -819.33 -1.85 -24.09 16 9 C 0.11 4.08 5.92 86.55 0.51 4.60 16 10 C 0.13 5.09 4.32 45.47 0.20 5.29 16 11 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 12 C -0.11 -3.89 6.18 31.55 0.20 -3.69 16 13 C -0.13 -4.68 6.18 31.56 0.20 -4.49 16 14 C 0.16 7.20 3.12 45.31 0.14 7.34 16 15 H 0.09 4.45 6.35 -2.39 -0.02 4.43 16 16 C 0.13 5.13 4.65 86.39 0.40 5.53 16 17 N -0.60 -28.14 2.81 -637.63 -1.79 -29.93 16 18 C -0.23 -12.12 10.37 84.03 0.87 -11.25 16 19 H 0.08 3.85 7.85 -2.91 -0.02 3.82 16 20 C -0.05 -2.49 5.42 84.86 0.46 -2.03 16 21 N -0.93 -50.15 10.42 21.65 0.23 -49.93 16 22 Si 0.97 43.08 29.56 68.60 2.03 45.11 16 23 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 24 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 26 C 0.18 5.48 5.52 42.89 0.24 5.71 16 27 C -0.05 -1.54 2.77 -11.54 -0.03 -1.57 16 28 C -0.12 -3.10 9.16 71.98 0.66 -2.44 16 29 C -0.13 -3.11 9.02 71.98 0.65 -2.46 16 30 N -0.49 -13.43 9.67 -171.06 -1.65 -15.08 16 31 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 0.98 8.07 -2.38 -0.02 0.96 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.14 3.96 7.60 -2.91 -0.02 3.94 16 36 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.09 3.15 7.08 -2.39 -0.02 3.13 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.06 2.12 7.84 -2.39 -0.02 2.10 16 40 H 0.06 2.00 7.83 -2.38 -0.02 1.98 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.07 2.68 5.63 -2.39 -0.01 2.67 16 43 H 0.05 2.42 7.83 -2.39 -0.02 2.40 16 44 H 0.25 13.17 8.31 -92.70 -0.77 12.39 16 45 H 0.07 2.42 5.58 -2.39 -0.01 2.41 16 46 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 47 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.07 1.58 7.91 -2.38 -0.02 1.56 16 Total: -1.00 -61.41 394.59 4.17 -57.24 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.91 Total: 26.80 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: 6.35 Total: 13.18 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -5.07 Total: -119.03 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.06 Total: -23.30 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -61.41 4.17 -57.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029412013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.003 kcal (2) G-P(sol) polarization free energy of solvation -61.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds