Wall clock time and date at job start Wed Apr 1 2020 01:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31695 * 119.71581 * 2 1 4 4 C 1.31929 * 121.88258 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.46279 * 179.97438 * 4 3 2 6 6 C 1.52990 * 109.47407 * 94.99195 * 5 4 3 7 7 C 1.53005 * 109.46825 * 214.99554 * 5 4 3 8 8 C 1.38359 * 121.07559 * 359.97438 * 4 3 2 9 9 C 1.38359 * 119.30392 * 359.74955 * 8 4 3 10 10 C 1.39514 * 119.71857 * 180.02562 * 2 1 3 11 11 C 1.47837 * 120.55948 * 0.02562 * 10 2 1 12 12 O 1.21548 * 120.00124 * 308.84180 * 11 10 2 13 13 N 1.34782 * 120.00381 * 128.83966 * 11 10 2 14 14 C 1.47162 * 120.71302 * 184.22958 * 13 11 10 15 15 C 1.53884 * 108.02976 * 132.74998 * 14 13 11 16 16 H 1.08996 * 112.57906 * 182.21673 * 15 14 13 17 17 C 1.54127 * 107.71267 * 306.32937 * 15 14 13 18 18 C 1.54279 * 104.89556 * 89.40691 * 17 15 14 19 19 C 1.54546 * 104.84511 * 359.81252 * 18 17 15 20 20 H 1.09001 * 112.18048 * 146.40944 * 19 18 17 21 21 C 1.49255 * 120.76285 * 4.31193 * 13 11 10 22 22 N 1.48305 * 104.35975 * 24.70030 * 19 18 17 23 23 C 1.36936 * 128.07547 * 139.08095 * 22 19 18 24 24 H 1.07989 * 120.00423 * 340.33306 * 23 22 19 25 25 C 1.38817 * 119.99726 * 160.32593 * 23 22 19 26 26 N 1.31624 * 120.00093 * 353.34677 * 25 23 22 27 27 Si 1.86800 * 119.99956 * 173.34052 * 25 23 22 28 28 H 1.48497 * 109.47134 * 180.02562 * 27 25 23 29 29 H 1.48503 * 109.46998 * 300.00042 * 27 25 23 30 30 H 1.48495 * 109.46942 * 60.00202 * 27 25 23 31 31 H 1.09002 * 109.46981 * 274.18894 * 1 2 3 32 32 H 1.08997 * 109.47159 * 34.18991 * 1 2 3 33 33 H 1.09002 * 109.47070 * 154.19229 * 1 2 3 34 34 H 1.09005 * 109.46681 * 334.98877 * 5 4 3 35 35 H 1.09005 * 109.47460 * 60.00159 * 6 5 4 36 36 H 1.09001 * 109.47299 * 179.97438 * 6 5 4 37 37 H 1.08998 * 109.47476 * 299.99707 * 6 5 4 38 38 H 1.09000 * 109.46726 * 299.99855 * 7 5 4 39 39 H 1.09000 * 109.47449 * 59.99485 * 7 5 4 40 40 H 1.09000 * 109.47084 * 179.97438 * 7 5 4 41 41 H 1.07999 * 120.34597 * 180.02562 * 8 4 3 42 42 H 1.07996 * 120.85397 * 180.25199 * 9 8 4 43 43 H 1.08997 * 109.75047 * 13.11458 * 14 13 11 44 44 H 1.09001 * 109.74980 * 252.38211 * 14 13 11 45 45 H 1.09004 * 110.50365 * 330.46924 * 17 15 14 46 46 H 1.09000 * 110.27825 * 208.23239 * 17 15 14 47 47 H 1.09000 * 110.36468 * 240.96607 * 18 17 15 48 48 H 1.09001 * 110.36466 * 118.64821 * 18 17 15 49 49 H 1.08997 * 110.51625 * 107.82290 * 21 13 11 50 50 H 1.08997 * 109.74641 * 346.59744 * 21 13 11 51 51 H 0.96998 * 119.99681 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1598 1.1438 0.0000 4 6 3.4781 1.1936 -0.0005 5 6 4.1692 2.5328 -0.0011 6 6 4.5152 2.9289 1.4356 7 6 5.4529 2.4439 -0.8288 8 6 4.2366 0.0365 -0.0005 9 6 3.5987 -1.1913 0.0053 10 6 2.1986 -1.2116 -0.0005 11 6 1.4656 -2.4955 -0.0017 12 8 0.5907 -2.6966 0.8177 13 7 1.7675 -3.4431 -0.9113 14 6 0.9872 -4.6886 -0.9865 15 6 0.6374 -4.9430 -2.4633 16 1 0.0229 -5.8328 -2.6005 17 6 -0.0484 -3.6747 -3.0080 18 6 1.1041 -2.7991 -3.5423 19 6 2.3849 -3.6189 -3.2663 20 1 3.1434 -3.4681 -4.0345 21 6 2.9013 -3.2539 -1.8634 22 7 1.9166 -5.0249 -3.2095 23 6 2.5211 -6.1380 -3.7296 24 1 3.2608 -6.0360 -4.5097 25 6 2.1831 -7.3976 -3.2540 26 7 1.3815 -7.5162 -2.2168 27 14 2.8656 -8.9244 -4.0863 28 1 2.3570 -10.1352 -3.3932 29 1 2.4329 -8.9491 -5.5067 30 1 4.3490 -8.9024 -4.0210 31 1 -0.3633 0.0751 1.0249 32 1 -0.3633 0.8500 -0.5775 33 1 -0.3633 -0.9252 -0.4474 34 1 3.5080 3.2827 -0.4355 35 1 5.1764 2.1790 1.8701 36 1 5.0155 3.8973 1.4352 37 1 3.6007 2.9923 2.0253 38 1 6.1141 1.6940 -0.3945 39 1 5.2065 2.1617 -1.8524 40 1 5.9526 3.4126 -0.8297 41 1 5.3152 0.0910 -0.0005 42 1 4.1661 -2.1102 0.0095 43 1 0.0720 -4.5856 -0.4036 44 1 1.5794 -5.5181 -0.6001 45 1 -0.5805 -3.1560 -2.2105 46 1 -0.7341 -3.9329 -3.8150 47 1 1.1386 -1.8499 -3.0076 48 1 0.9862 -2.6286 -4.6124 49 1 3.7357 -3.9029 -1.5976 50 1 3.2244 -2.2130 -1.8490 51 1 1.1457 -8.3963 -1.8843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029479264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:04 Heat of formation + Delta-G solvation = 29.699694 kcal Electronic energy + Delta-G solvation = -31740.831569 eV Core-core repulsion = 27833.728716 eV Total energy + Delta-G solvation = -3907.102853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.93090 -39.58885 -37.79848 -35.83446 -33.95737 -32.84457 -32.30965 -31.62242 -30.51867 -29.29854 -27.92791 -27.25839 -26.26607 -24.68563 -23.98097 -23.42480 -22.39639 -20.80830 -19.84601 -19.66668 -18.77317 -17.38633 -16.90275 -16.30699 -15.89345 -15.44051 -15.27441 -14.79240 -14.63675 -14.34021 -14.12203 -13.81509 -13.54117 -13.48424 -13.32525 -13.10949 -12.93968 -12.77670 -12.60369 -12.36028 -12.20016 -12.09349 -11.86590 -11.66796 -11.62959 -11.39928 -11.36195 -11.17918 -11.06872 -10.90356 -10.86144 -10.39181 -10.08953 -9.91685 -9.89123 -9.81485 -9.60776 -9.60353 -9.20926 -8.81111 -8.75100 -8.11618 -6.84599 -5.90088 -3.27869 0.82897 1.18782 3.03341 3.32433 3.37691 3.38853 3.44036 3.73850 3.97221 4.37025 4.46488 4.65319 4.73781 4.84072 4.88010 4.98346 5.05435 5.12874 5.27998 5.33284 5.44585 5.47413 5.53698 5.55909 5.62281 5.64564 5.66435 5.71355 5.72492 5.73841 5.79782 5.90671 5.93784 5.97862 6.02432 6.11249 6.16274 6.21710 6.28465 6.35890 6.49315 6.57892 6.59650 6.66984 6.76492 6.81871 6.93044 7.26774 7.45167 7.64576 7.89956 7.99614 8.09631 8.60059 9.00332 9.62121 10.40647 11.23472 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017746 B = 0.003178 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.433023 B = 8807.859787 C = 9430.162414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.178 3.822 3 N -0.487 5.487 4 C 0.150 3.850 5 C -0.047 4.047 6 C -0.141 4.141 7 C -0.148 4.148 8 C -0.183 4.183 9 C -0.040 4.040 10 C -0.171 4.171 11 C 0.554 3.446 12 O -0.548 6.548 13 N -0.583 5.583 14 C 0.113 3.887 15 C 0.171 3.829 16 H 0.113 0.887 17 C -0.136 4.136 18 C -0.122 4.122 19 C 0.133 3.867 20 H 0.077 0.923 21 C 0.091 3.909 22 N -0.582 5.582 23 C -0.232 4.232 24 H 0.074 0.926 25 C 0.002 3.998 26 N -0.910 5.910 27 Si 0.912 3.088 28 H -0.290 1.290 29 H -0.285 1.285 30 H -0.284 1.284 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.070 0.930 50 H 0.068 0.932 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.352 17.771 2.991 18.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.040 3.960 3 N -0.196 5.196 4 C 0.012 3.988 5 C -0.066 4.066 6 C -0.199 4.199 7 C -0.206 4.206 8 C -0.203 4.203 9 C -0.066 4.066 10 C -0.177 4.177 11 C 0.341 3.659 12 O -0.428 6.428 13 N -0.315 5.315 14 C -0.010 4.010 15 C 0.064 3.936 16 H 0.130 0.870 17 C -0.176 4.176 18 C -0.161 4.161 19 C 0.025 3.975 20 H 0.095 0.905 21 C -0.033 4.033 22 N -0.304 5.304 23 C -0.360 4.360 24 H 0.092 0.908 25 C -0.196 4.196 26 N -0.555 5.555 27 Si 0.742 3.258 28 H -0.216 1.216 29 H -0.211 1.211 30 H -0.211 1.211 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.089 0.911 50 H 0.086 0.914 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.418 18.083 3.409 18.924 hybrid contribution 1.038 -1.704 -0.333 2.023 sum 5.456 16.379 3.076 17.535 Atomic orbital electron populations 1.20753 0.88129 1.03433 1.03617 1.21271 0.97033 0.86492 0.91243 1.67345 1.09287 1.28736 1.14222 1.21307 0.89271 0.95260 0.92977 1.20063 0.96436 0.92797 0.97319 1.21796 1.01829 1.01391 0.94842 1.21932 0.96363 1.02291 0.99965 1.21854 1.01518 0.92344 1.04594 1.21796 0.93111 0.98841 0.92875 1.20898 0.94672 0.95440 1.06650 1.18015 0.83232 0.83085 0.81612 1.90746 1.33279 1.80258 1.38517 1.48699 1.31971 1.18366 1.32425 1.22499 0.95118 0.83463 0.99878 1.21688 0.88194 0.95400 0.88321 0.86978 1.22577 0.97199 0.98236 0.99544 1.22453 0.96524 0.97456 0.99645 1.21947 0.94927 0.87438 0.93226 0.90501 1.23092 0.88726 0.99728 0.91777 1.45112 1.20123 1.00661 1.64456 1.18908 1.19973 0.83214 1.13904 0.90821 1.24931 1.00059 0.97773 0.96866 1.69835 1.38445 1.22797 1.24459 0.86215 0.78513 0.82350 0.78698 1.21570 1.21109 1.21056 0.89803 0.90684 0.90217 0.89200 0.92460 0.91879 0.92269 0.92037 0.92182 0.91847 0.84311 0.84213 0.91313 0.89741 0.92891 0.92773 0.93131 0.92608 0.91135 0.91387 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 9.38 36.00 0.34 -1.09 16 2 C 0.18 2.69 6.82 -82.18 -0.56 2.13 16 3 N -0.49 -6.87 10.17 -5.42 -0.06 -6.92 16 4 C 0.15 1.79 5.79 -82.51 -0.48 1.31 16 5 C -0.05 -0.42 3.23 -91.77 -0.30 -0.71 16 6 C -0.14 -1.10 9.17 37.15 0.34 -0.76 16 7 C -0.15 -1.03 8.62 37.16 0.32 -0.71 16 8 C -0.18 -2.06 9.16 -39.49 -0.36 -2.43 16 9 C -0.04 -0.53 7.58 -38.87 -0.29 -0.83 16 10 C -0.17 -2.70 4.95 -104.82 -0.52 -3.22 16 11 C 0.55 10.28 6.26 -12.33 -0.08 10.21 16 12 O -0.55 -11.63 15.26 5.32 0.08 -11.55 16 13 N -0.58 -11.04 2.28 -170.92 -0.39 -11.43 16 14 C 0.11 2.44 5.75 -3.22 -0.02 2.43 16 15 C 0.17 3.80 3.07 -65.88 -0.20 3.60 16 16 H 0.11 2.82 6.63 -51.93 -0.34 2.48 16 17 C -0.14 -2.59 6.16 -25.47 -0.16 -2.74 16 18 C -0.12 -2.12 6.19 -25.25 -0.16 -2.28 16 19 C 0.13 2.51 4.27 -65.66 -0.28 2.23 16 20 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 21 C 0.09 1.58 4.89 -2.05 -0.01 1.57 16 22 N -0.58 -13.43 2.79 -152.84 -0.43 -13.85 16 23 C -0.23 -5.91 10.36 -15.06 -0.16 -6.07 16 24 H 0.07 1.83 7.84 -52.49 -0.41 1.42 16 25 C 0.00 0.05 5.43 -17.43 -0.09 -0.05 16 26 N -0.91 -24.51 10.26 55.49 0.57 -23.94 16 27 Si 0.91 20.82 29.56 -169.99 -5.02 15.80 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.22 6.52 -51.93 -0.34 0.88 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.39 6.48 -51.93 -0.34 0.05 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.14 1.18 6.29 -52.49 -0.33 0.85 16 42 H 0.14 1.72 7.22 -52.49 -0.38 1.34 16 43 H 0.07 1.50 7.15 -51.93 -0.37 1.13 16 44 H 0.08 2.09 7.53 -51.93 -0.39 1.70 16 45 H 0.05 0.98 7.83 -51.93 -0.41 0.57 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.05 0.83 7.86 -51.93 -0.41 0.42 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 50 H 0.07 1.01 5.06 -51.93 -0.26 0.75 16 51 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -29.07 391.12 -10.20 -39.28 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -8.19 Total: 4.14 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -2.66 Total: 2.59 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.30 Total: -56.14 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.07 -10.20 -39.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029479264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.976 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds