Wall clock time and date at job start Wed Apr 1 2020 01:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38154 * 119.55014 * 2 1 4 4 C 1.39813 * 118.99939 * 180.02562 * 3 2 1 5 5 C 1.48155 * 120.92179 * 179.97438 * 4 3 2 6 6 O 1.21520 * 120.00030 * 28.58061 * 5 4 3 7 7 N 1.34770 * 120.00014 * 208.58918 * 5 4 3 8 8 C 1.46939 * 120.55492 * 5.81219 * 7 5 4 9 9 C 1.53342 * 108.68807 * 125.62777 * 8 7 5 10 10 C 1.52111 * 109.43928 * 53.30597 * 9 8 7 11 11 C 1.54383 * 110.51031 * 64.09414 * 10 9 8 12 12 C 1.54457 * 102.87239 * 83.32510 * 11 10 9 13 13 N 1.47076 * 107.29742 * 21.51053 * 12 11 10 14 14 C 1.36934 * 125.62961 * 180.96771 * 13 12 11 15 15 H 1.07998 * 120.00115 * 187.11481 * 14 13 12 16 16 C 1.38808 * 119.99784 * 7.11514 * 14 13 12 17 17 N 1.31617 * 119.99801 * 207.35719 * 16 14 13 18 18 Si 1.86803 * 120.00268 * 27.35866 * 16 14 13 19 19 H 1.48499 * 109.46886 * 274.68423 * 18 16 14 20 20 H 1.48496 * 109.46943 * 34.68234 * 18 16 14 21 21 H 1.48501 * 109.47003 * 154.68068 * 18 16 14 22 22 C 1.47582 * 108.74380 * 1.22675 * 13 12 11 23 23 C 1.52105 * 111.59817 * 300.69094 * 10 9 8 24 24 C 1.46928 * 120.55239 * 185.78832 * 7 5 4 25 25 C 1.39816 * 118.16067 * 0.24613 * 4 3 2 26 26 C 1.38153 * 118.99389 * 359.52821 * 25 4 3 27 27 C 1.50703 * 119.54961 * 180.22156 * 26 25 4 28 28 N 1.31810 * 120.90063 * 0.48637 * 26 25 4 29 29 H 1.09003 * 109.47185 * 90.00026 * 1 2 3 30 30 H 1.08993 * 109.47015 * 209.99868 * 1 2 3 31 31 H 1.08995 * 109.47046 * 330.00014 * 1 2 3 32 32 H 1.08002 * 120.49798 * 359.97438 * 3 2 1 33 33 H 1.09001 * 109.59672 * 5.86735 * 8 7 5 34 34 H 1.09001 * 109.60477 * 245.39216 * 8 7 5 35 35 H 1.09000 * 109.47202 * 293.31546 * 9 8 7 36 36 H 1.08994 * 109.47649 * 173.30098 * 9 8 7 37 37 H 1.09003 * 110.73027 * 324.97741 * 11 10 9 38 38 H 1.08996 * 110.73156 * 201.67799 * 11 10 9 39 39 H 1.09000 * 109.87719 * 262.08173 * 12 11 10 40 40 H 1.09005 * 109.87388 * 140.93302 * 12 11 10 41 41 H 0.97006 * 120.00097 * 5.11711 * 17 16 14 42 42 H 1.08998 * 110.37411 * 95.25976 * 22 13 12 43 43 H 1.09004 * 110.37674 * 217.61743 * 22 13 12 44 44 H 1.09006 * 109.47162 * 179.29445 * 23 10 9 45 45 H 1.08998 * 109.48036 * 299.31028 * 23 10 9 46 46 H 1.08993 * 109.60195 * 354.13102 * 24 7 5 47 47 H 1.09008 * 109.60079 * 114.60563 * 24 7 5 48 48 H 1.07991 * 120.50391 * 179.72367 * 25 4 3 49 49 H 1.09001 * 109.47522 * 270.25986 * 27 26 25 50 50 H 1.09008 * 109.46649 * 30.26257 * 27 26 25 51 51 H 1.09004 * 109.46989 * 150.25279 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2018 0.0000 4 6 3.5864 1.1884 -0.0005 5 6 4.3599 2.4520 -0.0011 6 8 3.8891 3.4528 0.5023 7 7 5.5856 2.4915 -0.5601 8 6 6.1147 1.3270 -1.2834 9 6 6.5348 1.7713 -2.6896 10 6 7.4828 2.9562 -2.5840 11 6 8.7883 2.5427 -1.8713 12 6 9.6221 1.9217 -3.0136 13 7 9.0888 2.4468 -4.2797 14 6 9.5424 2.1248 -5.5309 15 1 9.1622 2.6497 -6.3948 16 6 10.4909 1.1237 -5.6890 17 7 11.3108 1.1506 -6.7182 18 14 10.6036 -0.2617 -4.4410 19 1 11.4597 0.1641 -3.3048 20 1 9.2443 -0.5893 -3.9410 21 1 11.1964 -1.4612 -5.0852 22 6 7.9881 3.3827 -3.9787 23 6 6.8335 4.1306 -1.8679 24 6 6.4149 3.7000 -0.4570 25 6 4.2344 -0.0505 -0.0064 26 6 3.4740 -1.2040 -0.0014 27 6 4.1595 -2.5461 -0.0025 28 7 2.1572 -1.1466 -0.0009 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6491 2.1376 -0.0004 33 1 5.3428 0.5609 -1.3572 34 1 6.9791 0.9284 -0.7522 35 1 5.6514 2.0621 -3.2579 36 1 7.0378 0.9474 -3.1959 37 1 8.5869 1.8044 -1.0951 38 1 9.2931 3.4142 -1.4546 39 1 9.5277 0.8360 -2.9934 40 1 10.6687 2.2068 -2.9057 41 1 11.3027 1.9073 -7.3252 42 1 8.3577 4.4078 -3.9540 43 1 7.1924 3.2828 -4.7170 44 1 7.5451 4.9536 -1.8006 45 1 5.9543 4.4548 -2.4248 46 1 5.8410 4.4982 0.0137 47 1 7.3025 3.4847 0.1380 48 1 5.3129 -0.1050 -0.0115 49 1 4.3244 -2.8691 -1.0304 50 1 5.1176 -2.4651 0.5111 51 1 3.5324 -3.2748 0.5113 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035190006.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:11 Heat of formation + Delta-G solvation = 21.300674 kcal Electronic energy + Delta-G solvation = -31123.141280 eV Core-core repulsion = 27215.674218 eV Total energy + Delta-G solvation = -3907.467062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.25210 -41.09175 -39.91386 -37.47916 -35.28450 -34.67050 -34.21694 -32.87175 -32.07227 -30.59349 -30.01989 -28.80511 -27.85576 -26.08646 -24.88729 -24.65094 -23.54668 -22.87227 -22.15503 -21.03123 -19.87448 -18.99547 -18.41170 -17.58572 -17.31222 -17.04113 -16.79081 -16.54214 -16.39350 -15.65542 -15.57050 -15.50415 -15.34233 -14.96699 -14.68697 -14.52881 -14.30334 -14.17769 -14.06612 -13.91347 -13.62777 -13.29935 -13.06871 -12.98404 -12.94387 -12.92493 -12.80366 -12.65545 -12.60415 -12.24943 -12.07881 -11.70554 -11.62875 -11.48180 -11.43562 -11.26533 -10.96134 -10.86228 -10.62417 -10.43848 -9.77978 -9.73963 -9.07929 -8.67110 -5.38161 -0.34493 -0.01581 1.41364 1.53323 1.58570 1.73021 1.81343 2.57836 2.64600 3.02625 3.13719 3.18341 3.37948 3.52586 3.61726 3.67347 3.77353 3.87182 3.94626 4.06240 4.06558 4.22257 4.30999 4.35695 4.37799 4.44287 4.49235 4.53684 4.55155 4.67731 4.71680 4.74760 4.76015 4.79641 4.83160 4.83717 4.88109 4.93495 5.01656 5.03574 5.05234 5.08207 5.14130 5.23901 5.24538 5.33245 5.38199 5.50877 5.59561 5.62908 6.11662 6.18676 6.84672 6.89514 6.90455 7.50776 8.15912 8.84701 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013844 B = 0.003219 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.070320 B = 8695.497375 C = 9894.154239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.123 3.877 3 C -0.138 4.138 4 C -0.089 4.089 5 C 0.560 3.440 6 O -0.569 6.569 7 N -0.592 5.592 8 C 0.086 3.914 9 C -0.112 4.112 10 C -0.061 4.061 11 C -0.109 4.109 12 C 0.104 3.896 13 N -0.628 5.628 14 C -0.319 4.319 15 H 0.040 0.960 16 C -0.076 4.076 17 N -0.955 5.955 18 Si 1.104 2.896 19 H -0.272 1.272 20 H -0.263 1.263 21 H -0.312 1.312 22 C 0.141 3.859 23 C -0.107 4.107 24 C 0.116 3.884 25 C -0.159 4.159 26 C 0.124 3.876 27 C -0.106 4.106 28 N -0.491 5.491 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.029 0.971 40 H 0.020 0.980 41 H 0.248 0.752 42 H 0.025 0.975 43 H 0.027 0.973 44 H 0.091 0.909 45 H 0.059 0.941 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.175 0.825 49 H 0.089 0.911 50 H 0.098 0.902 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.918 -3.117 20.113 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.014 4.014 3 C -0.159 4.159 4 C -0.100 4.100 5 C 0.349 3.651 6 O -0.449 6.449 7 N -0.323 5.323 8 C -0.036 4.036 9 C -0.151 4.151 10 C -0.062 4.062 11 C -0.146 4.146 12 C -0.020 4.020 13 N -0.355 5.355 14 C -0.448 4.448 15 H 0.058 0.942 16 C -0.270 4.270 17 N -0.598 5.598 18 Si 0.931 3.069 19 H -0.198 1.198 20 H -0.189 1.189 21 H -0.241 1.241 22 C 0.016 3.984 23 C -0.146 4.146 24 C -0.006 4.006 25 C -0.179 4.179 26 C -0.014 4.014 27 C -0.163 4.163 28 N -0.203 5.203 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.163 0.837 33 H 0.133 0.867 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.120 0.880 38 H 0.105 0.895 39 H 0.047 0.953 40 H 0.038 0.962 41 H 0.056 0.944 42 H 0.043 0.957 43 H 0.046 0.954 44 H 0.110 0.890 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.114 0.886 48 H 0.192 0.808 49 H 0.108 0.892 50 H 0.117 0.883 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.824 -4.741 20.618 27.664 hybrid contribution 0.042 2.696 -1.654 3.163 sum -17.782 -2.045 18.965 26.077 Atomic orbital electron populations 1.20814 0.86329 1.04584 1.04188 1.21695 0.98610 0.87223 0.93899 1.22153 0.93160 1.00440 1.00139 1.20330 0.94728 0.93567 1.01356 1.18433 0.81061 0.87556 0.78098 1.90747 1.69637 1.36385 1.48112 1.48041 1.15362 1.16362 1.52570 1.22798 1.01168 0.87982 0.91604 1.21620 0.98422 0.98096 0.96926 1.21032 0.94908 0.95860 0.94369 1.22663 0.94095 1.01769 0.96063 1.21891 0.96772 0.96865 0.86474 1.44878 1.38264 1.51296 1.01050 1.19899 1.21798 1.18671 0.84425 0.94237 1.27057 0.93599 1.03262 1.03090 1.70998 1.35294 1.34505 1.19015 0.83383 0.76665 0.73628 0.73204 1.19811 1.18863 1.24062 1.21736 0.89104 0.92539 0.95029 1.21653 1.00709 0.97066 0.95161 1.21774 0.94978 0.86797 0.97042 1.22765 1.03199 0.91192 1.00759 1.21784 0.89029 0.97007 0.93547 1.20870 1.00587 0.90478 1.04350 1.67323 1.10482 1.29922 1.12558 0.89248 0.89914 0.89010 0.83711 0.86731 0.87902 0.92459 0.91367 0.88032 0.89461 0.95334 0.96200 0.94352 0.95666 0.95429 0.89045 0.92257 0.89402 0.88620 0.80823 0.89225 0.88326 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 10.17 71.24 0.72 -0.54 16 2 C 0.12 2.34 6.78 42.54 0.29 2.63 16 3 C -0.14 -2.84 9.33 22.63 0.21 -2.63 16 4 C -0.09 -1.89 5.52 -19.88 -0.11 -2.00 16 5 C 0.56 13.52 7.50 86.88 0.65 14.17 16 6 O -0.57 -17.27 16.18 -3.78 -0.06 -17.33 16 7 N -0.59 -12.09 2.96 -821.34 -2.43 -14.52 16 8 C 0.09 1.56 4.45 86.41 0.38 1.94 16 9 C -0.11 -2.84 4.87 30.42 0.15 -2.69 16 10 C -0.06 -1.62 0.55 -51.84 -0.03 -1.65 16 11 C -0.11 -2.82 4.92 31.56 0.16 -2.66 16 12 C 0.10 4.05 4.55 86.76 0.39 4.44 16 13 N -0.63 -29.35 3.30 -692.29 -2.29 -31.64 16 14 C -0.32 -18.45 10.44 84.03 0.88 -17.57 16 15 H 0.04 2.50 8.06 -2.91 -0.02 2.48 16 16 C -0.08 -4.52 5.44 84.86 0.46 -4.05 16 17 N -0.95 -61.41 13.70 21.65 0.30 -61.11 16 18 Si 1.10 51.96 24.65 68.60 1.69 53.65 16 19 H -0.27 -11.69 6.71 99.48 0.67 -11.02 16 20 H -0.26 -10.91 6.59 99.48 0.66 -10.26 16 21 H -0.31 -15.13 7.11 99.48 0.71 -14.43 16 22 C 0.14 5.30 6.16 86.63 0.53 5.83 16 23 C -0.11 -2.31 4.84 30.41 0.15 -2.16 16 24 C 0.12 2.21 6.17 86.41 0.53 2.74 16 25 C -0.16 -2.73 7.17 22.63 0.16 -2.57 16 26 C 0.12 2.18 6.78 42.54 0.29 2.47 16 27 C -0.11 -1.22 10.16 71.24 0.72 -0.49 16 28 N -0.49 -10.07 10.16 -172.22 -1.75 -11.82 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 0.85 8.07 -2.39 -0.02 0.83 16 32 H 0.15 2.81 7.98 -2.91 -0.02 2.79 16 33 H 0.12 1.89 3.96 -2.39 -0.01 1.88 16 34 H 0.10 1.44 6.46 -2.39 -0.02 1.42 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 2.05 7.81 -2.39 -0.02 2.03 16 37 H 0.10 1.98 6.17 -2.39 -0.01 1.97 16 38 H 0.09 2.00 7.98 -2.39 -0.02 1.99 16 39 H 0.03 1.14 3.65 -2.39 -0.01 1.13 16 40 H 0.02 0.85 7.69 -2.38 -0.02 0.83 16 41 H 0.25 16.08 8.73 -92.70 -0.81 15.27 16 42 H 0.03 0.96 8.00 -2.39 -0.02 0.94 16 43 H 0.03 1.10 8.03 -2.38 -0.02 1.08 16 44 H 0.09 1.78 8.09 -2.38 -0.02 1.76 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 46 H 0.09 1.85 6.99 -2.39 -0.02 1.83 16 47 H 0.10 1.45 7.62 -2.38 -0.02 1.44 16 48 H 0.17 2.15 5.39 -2.92 -0.02 2.14 16 49 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.10 0.73 8.08 -2.38 -0.02 0.71 16 51 H 0.08 0.92 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -77.00 384.76 2.81 -74.19 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.81 Total: 13.39 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 6.55 Total: -4.80 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -6.17 Total: -119.10 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.06 Total: -17.33 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 1.69 Total: 53.65 kcal Total: -77.00 2.81 -74.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035190006.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.493 kcal (2) G-P(sol) polarization free energy of solvation -77.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds