Wall clock time and date at job start Wed Apr 1 2020 02:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38678 * 120.78677 * 2 1 4 4 C 1.38184 * 119.16344 * 180.27394 * 3 2 1 5 5 N 1.31885 * 120.76515 * 359.70270 * 4 3 2 6 6 C 1.31860 * 121.72576 * 0.02562 * 5 4 3 7 7 C 1.38225 * 120.76049 * 359.97438 * 6 5 4 8 8 C 1.50710 * 120.41556 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46897 * 264.99632 * 8 7 6 10 10 O 1.21275 * 120.00111 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99612 * 180.02562 * 9 8 7 12 12 C 1.46928 * 120.55057 * 179.97438 * 11 9 8 13 13 C 1.53342 * 108.68473 * 125.63017 * 12 11 9 14 14 C 1.52110 * 109.44249 * 53.30481 * 13 12 11 15 15 C 1.54385 * 110.50739 * 64.08966 * 14 13 12 16 16 C 1.54457 * 102.87109 * 83.33374 * 15 14 13 17 17 N 1.47083 * 107.29725 * 21.50085 * 16 15 14 18 18 C 1.36935 * 125.62931 * 180.96847 * 17 16 15 19 19 H 1.08003 * 119.99937 * 168.95343 * 18 17 16 20 20 C 1.38811 * 119.99964 * 348.94815 * 18 17 16 21 21 N 1.31619 * 119.99929 * 165.65470 * 20 18 17 22 22 Si 1.86799 * 120.00069 * 345.65523 * 20 18 17 23 23 H 1.48500 * 109.47088 * 185.28736 * 22 20 18 24 24 H 1.48495 * 109.46844 * 305.28614 * 22 20 18 25 25 H 1.48497 * 109.46908 * 65.28631 * 22 20 18 26 26 C 1.47575 * 108.74515 * 1.23423 * 17 16 15 27 27 C 1.52103 * 111.59976 * 300.69054 * 14 13 12 28 28 C 1.46928 * 120.55101 * 359.97438 * 11 9 8 29 29 H 1.09000 * 109.47273 * 270.28762 * 1 2 3 30 30 H 1.08999 * 109.47937 * 30.29047 * 1 2 3 31 31 H 1.09000 * 109.46958 * 150.28991 * 1 2 3 32 32 H 1.07999 * 120.42031 * 359.97438 * 3 2 1 33 33 H 1.07996 * 119.61702 * 179.72470 * 4 3 2 34 34 H 1.08001 * 119.61815 * 179.97438 * 6 5 4 35 35 H 1.09003 * 109.46609 * 144.99728 * 8 7 6 36 36 H 1.08995 * 109.46867 * 24.99832 * 8 7 6 37 37 H 1.08999 * 109.60337 * 5.87416 * 12 11 9 38 38 H 1.09002 * 109.60479 * 245.38772 * 12 11 9 39 39 H 1.08999 * 109.47461 * 293.31423 * 13 12 11 40 40 H 1.08999 * 109.48299 * 173.29949 * 13 12 11 41 41 H 1.08995 * 110.73888 * 324.98680 * 15 14 13 42 42 H 1.09004 * 110.73381 * 201.67143 * 15 14 13 43 43 H 1.09003 * 109.87682 * 262.08138 * 16 15 14 44 44 H 1.09002 * 109.88538 * 140.92812 * 16 15 14 45 45 H 0.97002 * 120.00420 * 354.93210 * 21 20 18 46 46 H 1.09003 * 110.37719 * 95.25320 * 26 17 16 47 47 H 1.08995 * 110.38134 * 217.60924 * 26 17 16 48 48 H 1.08994 * 109.47603 * 179.28981 * 27 14 13 49 49 H 1.09001 * 109.48068 * 299.31611 * 27 14 13 50 50 H 1.08992 * 109.60702 * 354.12479 * 28 11 9 51 51 H 1.08995 * 109.60156 * 114.60997 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2167 1.1914 0.0000 4 6 3.5980 1.1522 -0.0058 5 7 4.2403 0.0003 -0.0053 6 6 3.5984 -1.1515 0.0000 7 6 2.2167 -1.1908 0.0060 8 6 1.4910 -2.5116 0.0127 9 6 1.1345 -2.8960 -1.4002 10 8 1.4400 -2.1694 -2.3218 11 7 0.4761 -4.0474 -1.6395 12 6 0.1219 -4.4339 -3.0121 13 6 0.6741 -5.8382 -3.2850 14 6 0.1969 -6.7898 -2.1985 15 6 -1.3398 -6.9318 -2.2405 16 6 -1.5568 -8.0016 -3.3333 17 7 -0.3016 -8.7578 -3.4602 18 6 -0.0744 -9.7850 -4.3368 19 1 0.9282 -10.1599 -4.4811 20 6 -1.1325 -10.3443 -5.0399 21 7 -0.8967 -11.1226 -6.0748 22 14 -2.8910 -9.9926 -4.5171 23 1 -3.8238 -10.8025 -5.3413 24 1 -3.0617 -10.3459 -3.0850 25 1 -3.1855 -8.5499 -4.7096 26 6 0.6703 -8.2312 -2.4825 27 6 0.6530 -6.3388 -0.8193 28 6 0.1005 -4.9370 -0.5321 29 1 -0.3634 0.0052 1.0276 30 1 -0.3635 0.8873 -0.5183 31 1 -0.3633 -0.8926 -0.5093 32 1 1.6966 2.1378 -0.0004 33 1 4.1581 2.0756 -0.0103 34 1 4.1586 -2.0748 -0.0002 35 1 0.5807 -2.4229 0.6059 36 1 2.1341 -3.2773 0.4464 37 1 0.5596 -3.7258 -3.7158 38 1 -0.9625 -4.4396 -3.1222 39 1 1.7636 -5.8062 -3.2873 40 1 0.3187 -6.1864 -4.2548 41 1 -1.8069 -5.9890 -2.5254 42 1 -1.7218 -7.2782 -1.2802 43 1 -1.7966 -7.5198 -4.2812 44 1 -2.3652 -8.6717 -3.0408 45 1 0.0117 -11.2465 -6.3916 46 1 0.6507 -8.8264 -1.5696 47 1 1.6728 -8.2235 -2.9102 48 1 0.2826 -7.0362 -0.0680 49 1 1.7422 -6.3139 -0.7868 50 1 0.5240 -4.5608 0.3991 51 1 -0.9855 -4.9815 -0.4510 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035195530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:11 Heat of formation + Delta-G solvation = 29.949517 kcal Electronic energy + Delta-G solvation = -30679.440622 eV Core-core repulsion = 26772.348602 eV Total energy + Delta-G solvation = -3907.092020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.04024 -40.25129 -38.80482 -36.10858 -34.71162 -33.29696 -32.81301 -31.34900 -31.27110 -29.11154 -28.87321 -27.88065 -26.91653 -23.85604 -23.70132 -22.99713 -22.85699 -21.94971 -20.54229 -19.80965 -18.27970 -17.51819 -17.12494 -16.95999 -16.72727 -16.14514 -15.50851 -15.45079 -15.28042 -14.98706 -14.50729 -14.08869 -13.81997 -13.75146 -13.61320 -13.54070 -13.20828 -13.18087 -13.08913 -12.96780 -12.86634 -12.60889 -12.31348 -12.26865 -11.85896 -11.66711 -11.46768 -11.32088 -11.19308 -10.98042 -10.49101 -10.39405 -10.26988 -10.07360 -9.90832 -9.71364 -9.66921 -9.32055 -9.20222 -8.96226 -8.73719 -8.66629 -7.02392 -6.30721 -3.22057 0.82545 0.99728 2.44279 2.83001 3.40306 3.47897 3.53441 3.70500 4.10672 4.30832 4.37363 4.38198 4.52067 4.59860 4.61571 4.65165 4.70583 4.87952 4.97286 4.99057 5.01579 5.10159 5.14664 5.17028 5.19484 5.25133 5.30148 5.35684 5.48194 5.50110 5.59991 5.62280 5.65590 5.72962 5.77394 5.77995 5.87978 5.93181 6.01064 6.03717 6.21122 6.28633 6.31149 6.38386 6.43637 6.50434 6.62399 6.74271 6.75977 7.24885 7.67863 7.72999 8.00957 8.33840 9.04628 9.56363 10.23686 11.19937 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.028226 B = 0.002317 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.738718 B =12080.355446 C =12329.279304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.026 4.026 3 C -0.175 4.175 4 C 0.098 3.902 5 N -0.489 5.489 6 C 0.115 3.885 7 C -0.118 4.118 8 C -0.099 4.099 9 C 0.515 3.485 10 O -0.536 6.536 11 N -0.607 5.607 12 C 0.111 3.889 13 C -0.111 4.111 14 C -0.071 4.071 15 C -0.123 4.123 16 C 0.112 3.888 17 N -0.612 5.612 18 C -0.319 4.319 19 H 0.077 0.923 20 C -0.023 4.023 21 N -0.930 5.930 22 Si 1.073 2.927 23 H -0.303 1.303 24 H -0.299 1.299 25 H -0.287 1.287 26 C 0.147 3.853 27 C -0.118 4.118 28 C 0.106 3.894 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.133 0.867 33 H 0.154 0.846 34 H 0.153 0.847 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.044 0.956 44 H 0.026 0.974 45 H 0.261 0.739 46 H 0.023 0.977 47 H 0.042 0.958 48 H 0.078 0.922 49 H 0.067 0.933 50 H 0.082 0.918 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 22.974 17.978 29.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.034 4.034 3 C -0.194 4.194 4 C -0.058 4.058 5 N -0.197 5.197 6 C -0.042 4.042 7 C -0.120 4.120 8 C -0.139 4.139 9 C 0.303 3.697 10 O -0.412 6.412 11 N -0.341 5.341 12 C -0.010 4.010 13 C -0.149 4.149 14 C -0.073 4.073 15 C -0.160 4.160 16 C -0.013 4.013 17 N -0.339 5.339 18 C -0.447 4.447 19 H 0.095 0.905 20 C -0.222 4.222 21 N -0.571 5.571 22 Si 0.907 3.093 23 H -0.231 1.231 24 H -0.228 1.228 25 H -0.215 1.215 26 C 0.021 3.979 27 C -0.156 4.156 28 C -0.017 4.017 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.151 0.849 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.041 0.959 47 H 0.061 0.939 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.101 0.899 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.833 22.913 17.062 28.627 hybrid contribution 0.676 0.130 0.389 0.791 sum 2.509 23.043 17.451 29.014 Atomic orbital electron populations 1.20849 0.90422 1.03698 1.02547 1.20131 0.96632 0.92467 0.94136 1.21995 0.95643 0.98473 1.03334 1.22725 0.91778 0.96254 0.95073 1.67683 1.41093 0.98444 1.12507 1.22603 0.90836 0.96359 0.94382 1.20184 0.94970 0.94209 1.02680 1.20645 1.02155 0.95494 0.95646 1.20410 0.77605 0.80838 0.90867 1.90725 1.53433 1.51183 1.45895 1.48156 1.56946 1.20621 1.08381 1.21747 1.00037 0.96850 0.82410 1.21636 1.00671 0.92779 0.99854 1.21104 0.95764 0.96466 0.93922 1.22656 0.95103 0.98928 0.99350 1.21982 0.90222 0.92442 0.96623 1.44855 1.09481 1.38611 1.40973 1.20162 0.95882 1.11171 1.17451 0.90545 1.25853 1.03504 0.96752 0.96129 1.70888 1.22858 1.40097 1.23304 0.83796 0.76410 0.74976 0.74074 1.23149 1.22849 1.21453 1.21542 0.93804 0.90047 0.92523 1.21747 1.01206 0.95391 0.97305 1.21861 1.00550 0.90338 0.88915 0.90423 0.90824 0.91119 0.84876 0.82863 0.83004 0.87742 0.87574 0.89168 0.91221 0.91852 0.89559 0.91347 0.91531 0.93861 0.95672 0.92896 0.95903 0.93928 0.90323 0.91423 0.89940 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 9.31 36.00 0.34 -0.49 16 2 C -0.03 -0.23 5.92 -104.32 -0.62 -0.85 16 3 C -0.17 -1.47 9.82 -39.44 -0.39 -1.86 16 4 C 0.10 0.92 11.18 -17.55 -0.20 0.72 16 5 N -0.49 -5.61 10.36 -13.25 -0.14 -5.75 16 6 C 0.12 1.22 10.84 -17.54 -0.19 1.03 16 7 C -0.12 -1.14 4.39 -104.48 -0.46 -1.60 16 8 C -0.10 -0.77 3.52 -29.03 -0.10 -0.87 16 9 C 0.52 5.84 6.99 -10.98 -0.08 5.76 16 10 O -0.54 -8.29 15.44 5.56 0.09 -8.21 16 11 N -0.61 -6.47 2.96 -172.56 -0.51 -6.98 16 12 C 0.11 1.40 6.12 -3.63 -0.02 1.37 16 13 C -0.11 -1.60 4.87 -27.01 -0.13 -1.73 16 14 C -0.07 -1.02 0.55 -153.98 -0.08 -1.10 16 15 C -0.12 -1.84 4.91 -25.24 -0.12 -1.96 16 16 C 0.11 2.33 4.24 -2.96 -0.01 2.32 16 17 N -0.61 -14.49 3.31 -170.17 -0.56 -15.05 16 18 C -0.32 -9.06 10.56 -15.06 -0.16 -9.22 16 19 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 20 C -0.02 -0.69 5.50 -17.43 -0.10 -0.78 16 21 N -0.93 -29.32 13.70 55.49 0.76 -28.56 16 22 Si 1.07 26.80 24.53 -169.99 -4.17 22.63 16 23 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 24 H -0.30 -7.22 6.84 56.52 0.39 -6.83 16 25 H -0.29 -6.52 5.43 56.52 0.31 -6.21 16 26 C 0.15 2.77 6.16 -2.74 -0.02 2.75 16 27 C -0.12 -1.22 4.84 -26.99 -0.13 -1.35 16 28 C 0.11 0.87 6.07 -3.61 -0.02 0.85 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.07 0.56 6.35 -51.93 -0.33 0.23 16 32 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.10 0.58 6.90 -51.93 -0.36 0.22 16 36 H 0.11 0.61 7.62 -51.93 -0.40 0.22 16 37 H 0.09 1.25 6.99 -51.93 -0.36 0.89 16 38 H 0.07 0.83 6.55 -51.93 -0.34 0.49 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 1.47 7.82 -51.93 -0.41 1.06 16 41 H 0.07 0.90 6.17 -51.93 -0.32 0.58 16 42 H 0.07 0.90 7.98 -51.93 -0.41 0.49 16 43 H 0.04 0.96 6.79 -51.93 -0.35 0.60 16 44 H 0.03 0.57 3.81 -51.93 -0.20 0.37 16 45 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 46 H 0.02 0.43 8.00 -51.93 -0.42 0.02 16 47 H 0.04 0.83 8.03 -51.93 -0.42 0.41 16 48 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 49 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.08 0.45 5.91 -51.93 -0.31 0.14 16 51 H 0.07 0.56 7.62 -51.93 -0.40 0.17 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -35.76 383.59 -9.32 -45.08 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -8.08 Total: -1.93 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.49 Total: -7.02 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.45 Total: -56.34 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.09 Total: -8.21 kcal Atomic # 14 Polarization: 26.80 SS G_CDS: -4.17 Total: 22.63 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.76 -9.32 -45.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035195530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.028 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds