Wall clock time and date at job start Wed Apr 1 2020 03:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38628 * 120.75706 * 2 1 4 4 C 1.38554 * 119.35294 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.54729 * 179.97438 * 4 3 2 6 6 N 1.31520 * 120.90246 * 0.02562 * 4 3 2 7 7 C 1.32715 * 121.64688 * 359.97438 * 6 4 3 8 8 C 1.48170 * 119.72407 * 179.97438 * 7 6 4 9 9 O 1.21519 * 119.99879 * 202.41644 * 8 7 6 10 10 N 1.34770 * 120.00050 * 22.41843 * 8 7 6 11 11 C 1.46943 * 120.55234 * 186.41284 * 10 8 7 12 12 C 1.53338 * 108.68385 * 125.62659 * 11 10 8 13 13 C 1.52105 * 109.44449 * 53.30756 * 12 11 10 14 14 C 1.54389 * 110.51154 * 64.08497 * 13 12 11 15 15 C 1.54457 * 102.86788 * 83.33206 * 14 13 12 16 16 N 1.47081 * 107.29660 * 21.50626 * 15 14 13 17 17 C 1.36941 * 125.62797 * 180.96120 * 16 15 14 18 18 H 1.07999 * 119.99828 * 178.06258 * 17 16 15 19 19 C 1.38810 * 119.99940 * 358.06801 * 17 16 15 20 20 N 1.31623 * 119.99612 * 214.56486 * 19 17 16 21 21 Si 1.86800 * 120.00212 * 34.56179 * 19 17 16 22 22 H 1.48500 * 109.46977 * 269.26647 * 21 19 17 23 23 H 1.48501 * 109.47038 * 29.26621 * 21 19 17 24 24 H 1.48498 * 109.47100 * 149.26422 * 21 19 17 25 25 C 1.47573 * 108.74652 * 1.23169 * 16 15 14 26 26 C 1.52110 * 111.59885 * 300.68988 * 13 12 11 27 27 C 1.46928 * 120.55424 * 6.38580 * 10 8 7 28 28 C 1.38596 * 120.75411 * 180.26344 * 2 1 3 29 29 H 1.08992 * 109.47128 * 89.99701 * 1 2 3 30 30 H 1.08999 * 109.46609 * 209.99661 * 1 2 3 31 31 H 1.08994 * 109.46984 * 329.99689 * 1 2 3 32 32 H 1.07998 * 120.31691 * 0.03100 * 3 2 1 33 33 H 1.09006 * 109.47687 * 270.02722 * 5 4 3 34 34 H 1.09003 * 109.47466 * 30.02795 * 5 4 3 35 35 H 1.09007 * 109.47182 * 150.02710 * 5 4 3 36 36 H 1.09004 * 109.60217 * 5.86576 * 11 10 8 37 37 H 1.09002 * 109.59935 * 245.38962 * 11 10 8 38 38 H 1.09003 * 109.47606 * 293.31392 * 12 11 10 39 39 H 1.09000 * 109.47278 * 173.29562 * 12 11 10 40 40 H 1.08997 * 110.72981 * 324.98911 * 14 13 12 41 41 H 1.09001 * 110.73183 * 201.67939 * 14 13 12 42 42 H 1.08995 * 109.88038 * 262.07961 * 15 14 13 43 43 H 1.09001 * 109.87505 * 140.92918 * 15 14 13 44 44 H 0.96989 * 119.99952 * 5.02667 * 20 19 17 45 45 H 1.08999 * 110.38033 * 95.25512 * 25 16 15 46 46 H 1.08996 * 110.38213 * 217.61035 * 25 16 15 47 47 H 1.09001 * 109.47409 * 179.29545 * 26 13 12 48 48 H 1.09006 * 109.47367 * 299.31304 * 26 13 12 49 49 H 1.09001 * 109.60002 * 354.13643 * 27 10 8 50 50 H 1.09007 * 109.59543 * 114.60817 * 27 10 8 51 51 H 1.07999 * 120.47120 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2160 1.1913 0.0000 4 6 3.6011 1.1573 0.0005 5 6 4.3762 2.4497 0.0000 6 7 4.2487 0.0126 0.0005 7 6 3.6083 -1.1498 0.0005 8 6 4.3807 -2.4142 0.0000 9 8 3.8671 -3.4398 -0.4014 10 7 5.6529 -2.4268 0.4446 11 6 6.4756 -3.6380 0.3203 12 6 7.7724 -3.2777 -0.4144 13 6 8.4428 -2.1062 0.2866 14 6 8.8712 -2.5040 1.7155 15 6 10.2305 -3.2005 1.4857 16 7 10.7468 -2.7350 0.1896 17 6 11.9223 -3.1319 -0.3900 18 1 12.1993 -2.7539 -1.3630 19 6 12.7578 -4.0202 0.2731 20 7 14.0638 -3.9123 0.1498 21 14 12.0287 -5.3688 1.3405 22 1 11.8856 -4.8745 2.7335 23 1 10.6949 -5.7518 0.8117 24 1 12.9258 -6.5520 1.3247 25 6 9.7922 -1.7646 -0.3803 26 6 7.5388 -0.8833 0.3224 27 6 6.2406 -1.2297 1.0612 28 6 2.2158 -1.1910 -0.0055 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6936 2.1365 0.0005 33 1 4.5631 2.7610 -1.0279 34 1 3.7998 3.2193 0.5135 35 1 5.3264 2.3038 0.5138 36 1 5.9314 -4.3931 -0.2472 37 1 6.7121 -4.0228 1.3123 38 1 7.5424 -3.0021 -1.4437 39 1 8.4435 -4.1366 -0.4094 40 1 8.1527 -3.1957 2.1552 41 1 8.9913 -1.6205 2.3424 42 1 10.0940 -4.2817 1.4636 43 1 10.9252 -2.9288 2.2806 44 1 14.4445 -3.1696 -0.3443 45 1 10.0932 -0.7464 -0.1337 46 1 9.7233 -1.8896 -1.4609 47 1 8.0470 -0.0708 0.8418 48 1 7.3057 -0.5739 -0.6965 49 1 5.5415 -0.3971 0.9822 50 1 6.4589 -1.4286 2.1105 51 1 1.6959 -2.1377 -0.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035201599.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:15 Heat of formation + Delta-G solvation = 39.883498 kcal Electronic energy + Delta-G solvation = -31014.549292 eV Core-core repulsion = 27107.888042 eV Total energy + Delta-G solvation = -3906.661250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.28101 -39.95631 -38.58336 -36.01448 -34.68184 -33.37779 -32.88626 -31.19232 -30.93500 -28.91878 -28.51428 -27.92307 -27.17904 -25.01445 -23.62117 -22.87146 -22.58111 -21.63337 -20.43650 -19.98733 -18.33007 -17.60988 -16.95927 -16.76647 -16.45641 -16.04916 -15.41071 -15.20868 -14.98013 -14.71920 -14.49456 -13.98528 -13.83709 -13.74429 -13.57152 -13.39763 -13.31460 -13.11111 -13.03575 -12.74371 -12.63472 -12.55479 -12.30330 -12.17633 -12.03488 -11.68274 -11.28706 -11.10730 -10.97800 -10.83801 -10.51346 -10.40089 -10.24750 -10.23399 -9.94028 -9.85748 -9.56849 -9.35942 -9.18177 -9.09917 -8.53179 -8.27733 -6.99954 -6.33065 -3.04041 0.34809 0.76606 2.48884 2.87917 3.40444 3.49660 3.57537 3.73427 3.76184 4.13360 4.20342 4.56535 4.64659 4.69828 4.77595 4.90706 4.91884 4.98714 5.04727 5.07475 5.10950 5.14851 5.23641 5.26855 5.28558 5.38351 5.42618 5.47290 5.51957 5.59741 5.69364 5.74223 5.80599 5.81630 5.87073 5.89226 6.03448 6.07230 6.12985 6.22174 6.32048 6.37148 6.43877 6.49011 6.61425 6.66937 6.76646 6.87341 6.93367 7.30610 7.45165 7.79896 8.03434 8.40288 9.09174 9.68646 10.36866 11.15774 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023450 B = 0.002699 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.761799 B =10371.123624 C =11128.153245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.044 4.044 3 C -0.155 4.155 4 C 0.126 3.874 5 C -0.106 4.106 6 N -0.450 5.450 7 C 0.095 3.905 8 C 0.569 3.431 9 O -0.539 6.539 10 N -0.583 5.583 11 C 0.109 3.891 12 C -0.111 4.111 13 C -0.075 4.075 14 C -0.120 4.120 15 C 0.112 3.888 16 N -0.608 5.608 17 C -0.336 4.336 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.906 5.906 21 Si 1.046 2.954 22 H -0.295 1.295 23 H -0.291 1.291 24 H -0.301 1.301 25 C 0.150 3.850 26 C -0.106 4.106 27 C 0.074 3.926 28 C -0.123 4.123 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.139 0.861 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.031 0.969 43 H 0.036 0.964 44 H 0.264 0.736 45 H 0.025 0.975 46 H 0.039 0.961 47 H 0.073 0.927 48 H 0.066 0.934 49 H 0.138 0.862 50 H 0.058 0.942 51 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.395 13.209 2.317 31.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.052 4.052 3 C -0.175 4.175 4 C -0.013 4.013 5 C -0.163 4.163 6 N -0.164 5.164 7 C -0.042 4.042 8 C 0.355 3.645 9 O -0.417 6.417 10 N -0.314 5.314 11 C -0.012 4.012 12 C -0.149 4.149 13 C -0.077 4.077 14 C -0.158 4.158 15 C -0.013 4.013 16 N -0.335 5.335 17 C -0.463 4.463 18 H 0.096 0.904 19 C -0.214 4.214 20 N -0.545 5.545 21 Si 0.879 3.121 22 H -0.223 1.223 23 H -0.218 1.218 24 H -0.229 1.229 25 C 0.024 3.976 26 C -0.145 4.145 27 C -0.048 4.048 28 C -0.144 4.144 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.042 0.958 46 H 0.058 0.942 47 H 0.091 0.909 48 H 0.084 0.916 49 H 0.154 0.846 50 H 0.076 0.924 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -27.241 11.274 2.960 29.630 hybrid contribution -1.124 1.220 -0.927 1.900 sum -28.365 12.494 2.032 31.062 Atomic orbital electron populations 1.20844 0.89625 1.03623 1.03224 1.20354 0.97132 0.92498 0.95200 1.22043 0.94734 0.98877 1.01817 1.21468 0.91319 0.94042 0.94451 1.20769 1.00524 0.91431 1.03589 1.67382 1.39136 0.97650 1.12195 1.21160 0.91672 0.92062 0.99324 1.17904 0.81632 0.86796 0.78186 1.90774 1.69372 1.32927 1.48603 1.47961 1.11029 1.14418 1.57980 1.21826 0.91496 0.86588 1.01334 1.21637 0.95153 0.99364 0.98763 1.21189 0.95587 0.94776 0.96111 1.22616 0.97108 1.00129 0.95947 1.21662 0.93000 0.96916 0.89729 1.44814 1.22337 1.48258 1.18109 1.19924 0.93842 1.28460 1.04056 0.90413 1.25549 0.94004 1.01918 0.99940 1.70884 1.10459 1.34534 1.38656 0.84190 0.74113 0.77795 0.76016 1.22309 1.21839 1.22863 1.21520 0.86861 0.93011 0.96175 1.21594 0.94518 0.97226 1.01159 1.22849 0.97460 0.88895 0.95562 1.21958 0.93633 0.99542 0.99223 0.90199 0.90685 0.90768 0.84360 0.89994 0.90508 0.89916 0.89196 0.91053 0.91851 0.89671 0.91669 0.91552 0.95131 0.94658 0.92582 0.95755 0.94243 0.90864 0.91564 0.84584 0.92398 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.52 10.06 36.01 0.36 -0.16 16 2 C -0.04 -0.33 5.91 -104.34 -0.62 -0.95 16 3 C -0.15 -1.06 9.45 -39.32 -0.37 -1.43 16 4 C 0.13 1.05 6.78 -82.61 -0.56 0.49 16 5 C -0.11 -0.60 10.17 36.00 0.37 -0.23 16 6 N -0.45 -4.91 6.43 -6.06 -0.04 -4.95 16 7 C 0.10 1.15 6.41 -83.01 -0.53 0.62 16 8 C 0.57 8.29 7.59 -12.18 -0.09 8.20 16 9 O -0.54 -9.19 15.97 5.35 0.09 -9.10 16 10 N -0.58 -8.14 2.96 -173.56 -0.51 -8.65 16 11 C 0.11 1.60 6.11 -3.63 -0.02 1.58 16 12 C -0.11 -1.81 4.87 -27.01 -0.13 -1.95 16 13 C -0.08 -1.23 0.55 -153.98 -0.08 -1.32 16 14 C -0.12 -2.03 4.92 -25.24 -0.12 -2.15 16 15 C 0.11 2.49 4.56 -2.96 -0.01 2.47 16 16 N -0.61 -15.11 3.35 -170.18 -0.57 -15.68 16 17 C -0.34 -9.77 10.38 -15.06 -0.16 -9.93 16 18 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 19 C -0.01 -0.38 5.41 -17.43 -0.09 -0.47 16 20 N -0.91 -28.63 13.70 55.49 0.76 -27.87 16 21 Si 1.05 27.05 24.79 -169.99 -4.21 22.84 16 22 H -0.30 -7.30 6.83 56.52 0.39 -6.91 16 23 H -0.29 -7.13 6.37 56.52 0.36 -6.77 16 24 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 25 C 0.15 3.06 6.16 -2.75 -0.02 3.04 16 26 C -0.11 -1.42 4.84 -27.01 -0.13 -1.55 16 27 C 0.07 0.92 5.85 -3.63 -0.02 0.90 16 28 C -0.12 -1.23 9.33 -39.05 -0.36 -1.59 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 31 H 0.07 0.23 8.10 -51.93 -0.42 -0.19 16 32 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.27 8.08 -51.93 -0.42 -0.15 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.36 7.03 -51.93 -0.37 1.00 16 37 H 0.07 1.00 6.55 -51.93 -0.34 0.66 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.59 7.82 -51.93 -0.41 1.18 16 40 H 0.06 0.99 6.17 -51.93 -0.32 0.67 16 41 H 0.07 1.03 7.98 -51.93 -0.41 0.61 16 42 H 0.03 0.72 4.14 -51.93 -0.22 0.50 16 43 H 0.04 0.84 7.42 -51.93 -0.39 0.45 16 44 H 0.26 8.25 8.73 -40.82 -0.36 7.90 16 45 H 0.02 0.50 8.00 -51.93 -0.42 0.08 16 46 H 0.04 0.82 8.03 -51.93 -0.42 0.40 16 47 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.14 1.57 3.90 -76.79 -0.30 1.27 16 50 H 0.06 0.69 7.62 -51.93 -0.40 0.29 16 51 H 0.15 1.40 7.80 -52.49 -0.41 0.99 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -34.46 387.24 -9.49 -43.96 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -8.23 Total: -1.96 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.60 Total: -4.42 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.36 Total: -57.15 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 27.05 SS G_CDS: -4.21 Total: 22.84 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.46 -9.49 -43.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035201599.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.840 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds