Wall clock time and date at job start Wed Apr 1 2020 03:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38628 * 120.75706 * 2 1 4 4 C 1.38554 * 119.35294 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.54729 * 179.97438 * 4 3 2 6 6 N 1.31520 * 120.90246 * 0.02562 * 4 3 2 7 7 C 1.32715 * 121.64688 * 359.97438 * 6 4 3 8 8 C 1.48170 * 119.72407 * 179.97438 * 7 6 4 9 9 O 1.21519 * 119.99879 * 202.41644 * 8 7 6 10 10 N 1.34770 * 120.00050 * 22.41843 * 8 7 6 11 11 C 1.46943 * 120.55234 * 186.41284 * 10 8 7 12 12 C 1.53338 * 108.68385 * 125.62659 * 11 10 8 13 13 C 1.52105 * 109.44449 * 53.30756 * 12 11 10 14 14 C 1.54389 * 110.51154 * 64.08497 * 13 12 11 15 15 C 1.54457 * 102.86788 * 83.33206 * 14 13 12 16 16 N 1.47081 * 107.29660 * 21.50626 * 15 14 13 17 17 C 1.36941 * 125.62797 * 180.96120 * 16 15 14 18 18 H 1.07999 * 119.99828 * 178.06258 * 17 16 15 19 19 C 1.38810 * 119.99940 * 358.06801 * 17 16 15 20 20 N 1.31623 * 119.99612 * 214.56486 * 19 17 16 21 21 Si 1.86800 * 120.00212 * 34.56179 * 19 17 16 22 22 H 1.48500 * 109.46977 * 269.26647 * 21 19 17 23 23 H 1.48501 * 109.47038 * 29.26621 * 21 19 17 24 24 H 1.48498 * 109.47100 * 149.26422 * 21 19 17 25 25 C 1.47573 * 108.74652 * 1.23169 * 16 15 14 26 26 C 1.52110 * 111.59885 * 300.68988 * 13 12 11 27 27 C 1.46928 * 120.55424 * 6.38580 * 10 8 7 28 28 C 1.38596 * 120.75411 * 180.26344 * 2 1 3 29 29 H 1.08992 * 109.47128 * 89.99701 * 1 2 3 30 30 H 1.08999 * 109.46609 * 209.99661 * 1 2 3 31 31 H 1.08994 * 109.46984 * 329.99689 * 1 2 3 32 32 H 1.07998 * 120.31691 * 0.03100 * 3 2 1 33 33 H 1.09006 * 109.47687 * 270.02722 * 5 4 3 34 34 H 1.09003 * 109.47466 * 30.02795 * 5 4 3 35 35 H 1.09007 * 109.47182 * 150.02710 * 5 4 3 36 36 H 1.09004 * 109.60217 * 5.86576 * 11 10 8 37 37 H 1.09002 * 109.59935 * 245.38962 * 11 10 8 38 38 H 1.09003 * 109.47606 * 293.31392 * 12 11 10 39 39 H 1.09000 * 109.47278 * 173.29562 * 12 11 10 40 40 H 1.08997 * 110.72981 * 324.98911 * 14 13 12 41 41 H 1.09001 * 110.73183 * 201.67939 * 14 13 12 42 42 H 1.08995 * 109.88038 * 262.07961 * 15 14 13 43 43 H 1.09001 * 109.87505 * 140.92918 * 15 14 13 44 44 H 0.96989 * 119.99952 * 5.02667 * 20 19 17 45 45 H 1.08999 * 110.38033 * 95.25512 * 25 16 15 46 46 H 1.08996 * 110.38213 * 217.61035 * 25 16 15 47 47 H 1.09001 * 109.47409 * 179.29545 * 26 13 12 48 48 H 1.09006 * 109.47367 * 299.31304 * 26 13 12 49 49 H 1.09001 * 109.60002 * 354.13643 * 27 10 8 50 50 H 1.09007 * 109.59543 * 114.60817 * 27 10 8 51 51 H 1.07999 * 120.47120 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2160 1.1913 0.0000 4 6 3.6011 1.1573 0.0005 5 6 4.3762 2.4497 0.0000 6 7 4.2487 0.0126 0.0005 7 6 3.6083 -1.1498 0.0005 8 6 4.3807 -2.4142 0.0000 9 8 3.8671 -3.4398 -0.4014 10 7 5.6529 -2.4268 0.4446 11 6 6.4756 -3.6380 0.3203 12 6 7.7724 -3.2777 -0.4144 13 6 8.4428 -2.1062 0.2866 14 6 8.8712 -2.5040 1.7155 15 6 10.2305 -3.2005 1.4857 16 7 10.7468 -2.7350 0.1896 17 6 11.9223 -3.1319 -0.3900 18 1 12.1993 -2.7539 -1.3630 19 6 12.7578 -4.0202 0.2731 20 7 14.0638 -3.9123 0.1498 21 14 12.0287 -5.3688 1.3405 22 1 11.8856 -4.8745 2.7335 23 1 10.6949 -5.7518 0.8117 24 1 12.9258 -6.5520 1.3247 25 6 9.7922 -1.7646 -0.3803 26 6 7.5388 -0.8833 0.3224 27 6 6.2406 -1.2297 1.0612 28 6 2.2158 -1.1910 -0.0055 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6936 2.1365 0.0005 33 1 4.5631 2.7610 -1.0279 34 1 3.7998 3.2193 0.5135 35 1 5.3264 2.3038 0.5138 36 1 5.9314 -4.3931 -0.2472 37 1 6.7121 -4.0228 1.3123 38 1 7.5424 -3.0021 -1.4437 39 1 8.4435 -4.1366 -0.4094 40 1 8.1527 -3.1957 2.1552 41 1 8.9913 -1.6205 2.3424 42 1 10.0940 -4.2817 1.4636 43 1 10.9252 -2.9288 2.2806 44 1 14.4445 -3.1696 -0.3443 45 1 10.0932 -0.7464 -0.1337 46 1 9.7233 -1.8896 -1.4609 47 1 8.0470 -0.0708 0.8418 48 1 7.3057 -0.5739 -0.6965 49 1 5.5415 -0.3971 0.9822 50 1 6.4589 -1.4286 2.1105 51 1 1.6959 -2.1377 -0.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035201599.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:14 Heat of formation + Delta-G solvation = 18.378920 kcal Electronic energy + Delta-G solvation = -31015.481801 eV Core-core repulsion = 27107.888042 eV Total energy + Delta-G solvation = -3907.593759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.15439 -41.04649 -39.81289 -37.42138 -35.38515 -34.84394 -33.90047 -32.91172 -32.08618 -30.58793 -29.11526 -28.68061 -28.30647 -26.12395 -25.25620 -24.10742 -23.80757 -22.31041 -22.08836 -21.15892 -19.86526 -19.03339 -18.31386 -17.60326 -17.18071 -17.03566 -16.98189 -16.58045 -16.15970 -15.71797 -15.51585 -15.35303 -15.30141 -14.88417 -14.65590 -14.44700 -14.35475 -14.19880 -14.02858 -13.74878 -13.55029 -13.37462 -13.15221 -13.05667 -13.02413 -12.93062 -12.77894 -12.64949 -12.52264 -12.17618 -12.07095 -11.82408 -11.67869 -11.58583 -11.42172 -11.23731 -11.01030 -10.53562 -10.53252 -10.05974 -9.99677 -9.62095 -9.10562 -8.69555 -5.32209 -0.37344 0.15750 1.39355 1.50020 1.56744 1.67876 1.86821 2.53863 2.67068 2.94005 2.98978 3.40578 3.49397 3.57908 3.67258 3.76371 3.80025 3.99231 4.03138 4.08725 4.12561 4.28049 4.31974 4.36583 4.43468 4.49330 4.60485 4.61641 4.66001 4.71021 4.75012 4.77115 4.79161 4.85644 4.87541 4.89511 5.02265 5.03249 5.05342 5.08579 5.11418 5.20713 5.25994 5.29243 5.30310 5.37883 5.44058 5.56402 5.61954 5.78243 6.10972 6.29313 6.69188 6.83734 7.00685 7.52463 8.18927 8.80602 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023450 B = 0.002699 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.761799 B =10371.123624 C =11128.153245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.043 4.043 3 C -0.142 4.142 4 C 0.118 3.882 5 C -0.104 4.104 6 N -0.468 5.468 7 C 0.069 3.931 8 C 0.564 3.436 9 O -0.575 6.575 10 N -0.585 5.585 11 C 0.116 3.884 12 C -0.105 4.105 13 C -0.062 4.062 14 C -0.107 4.107 15 C 0.104 3.896 16 N -0.627 5.627 17 C -0.329 4.329 18 H 0.046 0.954 19 C -0.068 4.068 20 N -0.941 5.941 21 Si 1.091 2.909 22 H -0.274 1.274 23 H -0.273 1.273 24 H -0.306 1.306 25 C 0.145 3.855 26 C -0.096 4.096 27 C 0.078 3.922 28 C -0.133 4.133 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.175 0.825 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.025 0.975 43 H 0.021 0.979 44 H 0.251 0.749 45 H 0.031 0.969 46 H 0.026 0.974 47 H 0.091 0.909 48 H 0.061 0.939 49 H 0.151 0.849 50 H 0.071 0.929 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.140 15.563 4.124 35.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.050 4.050 3 C -0.162 4.162 4 C -0.022 4.022 5 C -0.162 4.162 6 N -0.182 5.182 7 C -0.067 4.067 8 C 0.352 3.648 9 O -0.455 6.455 10 N -0.315 5.315 11 C -0.006 4.006 12 C -0.143 4.143 13 C -0.063 4.063 14 C -0.145 4.145 15 C -0.021 4.021 16 N -0.355 5.355 17 C -0.457 4.457 18 H 0.064 0.936 19 C -0.264 4.264 20 N -0.583 5.583 21 Si 0.919 3.081 22 H -0.201 1.201 23 H -0.200 1.200 24 H -0.235 1.235 25 C 0.020 3.980 26 C -0.135 4.135 27 C -0.043 4.043 28 C -0.154 4.154 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.193 0.807 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.042 0.958 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.044 0.956 47 H 0.110 0.890 48 H 0.080 0.920 49 H 0.167 0.833 50 H 0.089 0.911 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -31.024 13.666 4.774 34.235 hybrid contribution -0.003 0.645 -1.627 1.750 sum -31.027 14.311 3.147 34.313 Atomic orbital electron populations 1.20926 0.87348 1.04801 1.04080 1.20709 0.98697 0.91734 0.93899 1.22466 0.94249 1.00086 0.99380 1.22009 0.92487 0.94011 0.93667 1.20867 1.00445 0.90651 1.04187 1.67211 1.39801 0.97966 1.13203 1.20835 0.92104 0.91492 1.02279 1.18369 0.81739 0.87469 0.77227 1.90739 1.70177 1.34508 1.50118 1.48035 1.10964 1.14529 1.57946 1.21669 0.90461 0.87010 1.01477 1.21527 0.95591 0.98419 0.98810 1.21087 0.93865 0.96079 0.95273 1.22617 0.94328 1.01111 0.96419 1.21812 0.95438 0.97101 0.87731 1.44908 1.22106 1.49022 1.19441 1.19821 0.95502 1.27539 1.02828 0.93572 1.26733 0.93824 1.03936 1.01869 1.70985 1.11623 1.34857 1.40824 0.83568 0.73940 0.74833 0.75755 1.20081 1.19980 1.23502 1.21703 0.88327 0.92229 0.95719 1.21527 0.94445 0.95961 1.01557 1.22977 0.96881 0.88768 0.95719 1.22047 0.93102 1.00573 0.99685 0.89350 0.90557 0.88614 0.80740 0.89541 0.87828 0.90407 0.90158 0.89796 0.92648 0.92236 0.89223 0.89208 0.95780 0.96064 0.93978 0.95072 0.95595 0.89030 0.92009 0.83289 0.91084 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.06 71.24 0.72 0.07 16 2 C -0.04 -0.52 5.91 -19.68 -0.12 -0.63 16 3 C -0.14 -1.38 9.45 22.44 0.21 -1.17 16 4 C 0.12 1.59 6.78 42.68 0.29 1.88 16 5 C -0.10 -0.79 10.17 71.23 0.72 -0.07 16 6 N -0.47 -9.25 6.43 -173.09 -1.11 -10.36 16 7 C 0.07 1.60 6.41 41.91 0.27 1.86 16 8 C 0.56 16.24 7.59 86.88 0.66 16.90 16 9 O -0.58 -19.94 15.97 -3.78 -0.06 -20.00 16 10 N -0.58 -15.54 2.96 -821.31 -2.43 -17.97 16 11 C 0.12 3.29 6.11 86.41 0.53 3.82 16 12 C -0.11 -3.39 4.87 30.41 0.15 -3.24 16 13 C -0.06 -1.92 0.55 -51.84 -0.03 -1.95 16 14 C -0.11 -3.31 4.92 31.56 0.16 -3.16 16 15 C 0.10 4.47 4.56 86.76 0.40 4.86 16 16 N -0.63 -31.40 3.35 -692.32 -2.32 -33.73 16 17 C -0.33 -19.72 10.38 84.03 0.87 -18.85 16 18 H 0.05 2.98 8.06 -2.91 -0.02 2.96 16 19 C -0.07 -4.16 5.41 84.86 0.46 -3.70 16 20 N -0.94 -61.52 13.70 21.65 0.30 -61.23 16 21 Si 1.09 55.36 24.79 68.60 1.70 57.06 16 22 H -0.27 -12.90 6.83 99.48 0.68 -12.22 16 23 H -0.27 -12.93 6.37 99.48 0.63 -12.29 16 24 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 25 C 0.15 5.88 6.16 86.63 0.53 6.42 16 26 C -0.10 -2.32 4.84 30.41 0.15 -2.18 16 27 C 0.08 1.70 5.85 86.41 0.51 2.21 16 28 C -0.13 -2.51 9.33 22.61 0.21 -2.30 16 29 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.08 0.43 8.10 -2.39 -0.02 0.41 16 31 H 0.10 0.15 8.10 -2.39 -0.02 0.13 16 32 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 33 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.10 0.23 8.08 -2.39 -0.02 0.21 16 35 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.08 2.45 7.03 -2.38 -0.02 2.43 16 37 H 0.08 2.16 6.55 -2.39 -0.02 2.15 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.06 2.22 7.82 -2.39 -0.02 2.21 16 40 H 0.09 2.39 6.17 -2.39 -0.01 2.37 16 41 H 0.09 2.41 7.98 -2.39 -0.02 2.39 16 42 H 0.02 1.10 4.14 -2.39 -0.01 1.09 16 43 H 0.02 0.98 7.42 -2.39 -0.02 0.97 16 44 H 0.25 16.48 8.73 -92.72 -0.81 15.67 16 45 H 0.03 1.24 8.00 -2.39 -0.02 1.22 16 46 H 0.03 1.10 8.03 -2.39 -0.02 1.08 16 47 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 48 H 0.06 1.57 8.14 -2.38 -0.02 1.56 16 49 H 0.15 3.04 3.90 -51.47 -0.20 2.84 16 50 H 0.07 1.40 7.62 -2.38 -0.02 1.39 16 51 H 0.14 2.68 7.80 -2.91 -0.02 2.65 16 Total: -1.00 -78.90 387.24 3.35 -75.56 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.60 Total: 9.91 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 6.68 Total: 0.76 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -5.57 Total: -123.28 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.06 Total: -20.00 kcal Atomic # 14 Polarization: 55.36 SS G_CDS: 1.70 Total: 57.06 kcal Total: -78.90 3.35 -75.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035201599.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.934 kcal (2) G-P(sol) polarization free energy of solvation -78.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds