Wall clock time and date at job start Wed Apr 1 2020 02:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38625 * 120.32410 * 2 1 4 4 C 1.38589 * 118.49083 * 179.77209 * 3 2 1 5 5 C 1.39315 * 119.05270 * 0.48723 * 4 3 2 6 6 C 1.48171 * 119.71733 * 179.77350 * 5 4 3 7 7 O 1.21508 * 120.00251 * 22.09598 * 6 5 4 8 8 N 1.34784 * 119.99636 * 202.09569 * 6 5 4 9 9 C 1.46935 * 120.54908 * 185.68841 * 8 6 5 10 10 C 1.53343 * 108.68196 * 125.63229 * 9 8 6 11 11 C 1.52106 * 109.44471 * 53.30132 * 10 9 8 12 12 C 1.54393 * 110.50844 * 64.08925 * 11 10 9 13 13 C 1.54457 * 102.86779 * 83.32984 * 12 11 10 14 14 N 1.47078 * 107.30008 * 21.50757 * 13 12 11 15 15 C 1.36936 * 125.63104 * 180.96273 * 14 13 12 16 16 H 1.08004 * 119.99971 * 173.19093 * 15 14 13 17 17 C 1.38808 * 119.99862 * 353.20273 * 15 14 13 18 18 N 1.31618 * 120.00039 * 157.18576 * 17 15 14 19 19 Si 1.86800 * 119.99872 * 337.18044 * 17 15 14 20 20 H 1.48504 * 109.46927 * 185.73379 * 19 17 15 21 21 H 1.48495 * 109.47629 * 305.73484 * 19 17 15 22 22 H 1.48501 * 109.46851 * 65.73706 * 19 17 15 23 23 C 1.47575 * 108.74165 * 1.22885 * 14 13 12 24 24 C 1.52107 * 111.60175 * 300.69613 * 11 10 9 25 25 C 1.46925 * 120.55202 * 5.67340 * 8 6 5 26 26 N 1.32715 * 120.55649 * 359.50243 * 5 4 3 27 27 C 1.31521 * 121.64368 * 0.25198 * 26 5 4 28 28 C 1.50697 * 119.54983 * 180.02562 * 27 26 5 29 29 H 1.08998 * 109.47567 * 269.97962 * 1 2 3 30 30 H 1.09006 * 109.47456 * 29.98034 * 1 2 3 31 31 H 1.08997 * 109.47681 * 149.97843 * 1 2 3 32 32 H 1.08007 * 120.75163 * 0.02562 * 3 2 1 33 33 H 1.07997 * 120.47229 * 180.26568 * 4 3 2 34 34 H 1.08994 * 109.60228 * 5.86904 * 9 8 6 35 35 H 1.09003 * 109.60026 * 245.38917 * 9 8 6 36 36 H 1.08999 * 109.47320 * 293.31250 * 10 9 8 37 37 H 1.09000 * 109.47416 * 173.29634 * 10 9 8 38 38 H 1.08997 * 110.73401 * 324.98933 * 12 11 10 39 39 H 1.08997 * 110.73699 * 201.67332 * 12 11 10 40 40 H 1.09002 * 109.88175 * 262.07762 * 13 12 11 41 41 H 1.09003 * 109.87615 * 140.93477 * 13 12 11 42 42 H 0.96998 * 120.00214 * 5.01843 * 18 17 15 43 43 H 1.09003 * 110.37985 * 95.26051 * 23 14 13 44 44 H 1.08995 * 110.37925 * 217.60949 * 23 14 13 45 45 H 1.08997 * 109.47679 * 179.29529 * 24 11 10 46 46 H 1.09001 * 109.47133 * 299.30903 * 24 11 10 47 47 H 1.09004 * 109.60513 * 354.12242 * 25 8 6 48 48 H 1.09000 * 109.60582 * 114.60362 * 25 8 6 49 49 H 1.09000 * 109.47287 * 90.00064 * 28 27 26 50 50 H 1.09002 * 109.47164 * 209.99673 * 28 27 26 51 51 H 1.09000 * 109.47162 * 329.99233 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1966 0.0000 4 6 3.5921 1.1523 0.0048 5 6 4.2293 -0.0866 -0.0008 6 6 5.7096 -0.1511 -0.0009 7 8 6.3590 0.7946 0.3995 8 7 6.3358 -1.2590 -0.4450 9 6 7.7955 -1.3864 -0.3356 10 6 8.1207 -2.6896 0.4041 11 6 7.4167 -3.8504 -0.2817 12 6 7.9575 -4.0401 -1.7154 13 6 9.2305 -4.8863 -1.4937 14 7 9.0896 -5.5555 -0.1916 15 6 10.0152 -6.3848 0.3834 16 1 9.8678 -6.7415 1.3921 17 6 11.1429 -6.7668 -0.3301 18 7 12.2227 -7.1643 0.3090 19 14 11.1280 -6.7169 -2.1974 20 1 12.3907 -7.2997 -2.7182 21 1 9.9743 -7.5022 -2.7045 22 1 11.0074 -5.3089 -2.6539 23 6 7.7832 -5.1909 0.3900 24 6 5.9081 -3.6570 -0.3025 25 6 5.5701 -2.3593 -1.0463 26 7 3.5217 -1.2093 -0.0008 27 6 2.2065 -1.1961 -0.0004 28 6 1.4501 -2.4994 0.0002 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5141 32 1 1.6845 2.1419 0.0004 33 1 4.1692 2.0651 0.0093 34 1 8.1957 -0.5397 0.2219 35 1 8.2360 -1.4120 -1.3323 36 1 7.7791 -2.6163 1.4366 37 1 9.1977 -2.8573 0.3886 38 1 8.2067 -3.0785 -2.1641 39 1 7.2379 -4.5796 -2.3311 40 1 10.1083 -4.2402 -1.4853 41 1 9.3232 -5.6304 -2.2848 42 1 12.2074 -7.2600 1.2741 43 1 7.0381 -5.9514 0.1565 44 1 7.8706 -5.0627 1.4689 45 1 5.4406 -4.5000 -0.8113 46 1 5.5354 -3.5975 0.7200 47 1 4.5033 -2.1541 -0.9571 48 1 5.8387 -2.4600 -2.0979 49 1 1.2680 -2.8134 1.0279 50 1 0.4978 -2.3671 -0.5134 51 1 2.0373 -3.2605 -0.5138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035206408.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:13 Heat of formation + Delta-G solvation = 46.929318 kcal Electronic energy + Delta-G solvation = -31049.593943 eV Core-core repulsion = 27143.238223 eV Total energy + Delta-G solvation = -3906.355720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.31018 -39.99959 -38.62717 -36.02473 -34.46987 -33.48804 -33.01646 -31.19807 -31.06108 -28.98564 -28.82900 -28.01333 -26.86787 -24.08996 -23.58734 -23.12845 -22.72504 -22.10042 -20.53746 -20.06958 -18.47066 -17.69641 -17.00028 -16.88335 -16.16715 -15.66301 -15.43777 -15.26121 -15.17189 -14.83249 -14.65201 -14.04796 -13.76067 -13.63376 -13.56117 -13.38775 -13.36366 -13.13203 -13.04322 -12.94915 -12.56406 -12.54710 -12.25585 -12.15192 -11.87307 -11.68914 -11.34991 -11.19662 -11.00935 -10.82992 -10.51329 -10.37928 -10.26496 -10.13448 -10.10729 -9.93269 -9.44220 -9.22072 -9.14670 -8.87407 -8.52988 -8.40612 -7.01408 -6.25364 -3.11202 0.32279 0.78974 2.48703 2.89237 3.40317 3.46532 3.54871 3.75241 3.75801 4.20514 4.30707 4.39216 4.44441 4.66668 4.79092 4.89535 4.95363 4.99243 5.03638 5.11182 5.12679 5.18246 5.19562 5.25578 5.30259 5.39326 5.44551 5.45589 5.56964 5.63489 5.64991 5.74133 5.76507 5.79604 5.86292 5.89918 6.02601 6.06644 6.11530 6.20348 6.32790 6.37466 6.43510 6.48224 6.51315 6.65147 6.77535 6.87457 6.89129 7.29911 7.44422 7.75505 8.04254 8.39949 9.11701 9.66024 10.33028 11.24564 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022172 B = 0.002679 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.535841 B =10448.549542 C =11045.919310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.118 4.118 3 C -0.080 4.080 4 C -0.116 4.116 5 C 0.084 3.916 6 C 0.569 3.431 7 O -0.540 6.540 8 N -0.583 5.583 9 C 0.109 3.891 10 C -0.110 4.110 11 C -0.073 4.073 12 C -0.123 4.123 13 C 0.121 3.879 14 N -0.611 5.611 15 C -0.323 4.323 16 H 0.076 0.924 17 C -0.024 4.024 18 N -0.926 5.926 19 Si 1.067 2.933 20 H -0.302 1.302 21 H -0.299 1.299 22 H -0.282 1.282 23 C 0.147 3.853 24 C -0.107 4.107 25 C 0.073 3.927 26 N -0.442 5.442 27 C 0.121 3.879 28 C -0.109 4.109 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.042 0.958 41 H 0.022 0.978 42 H 0.260 0.740 43 H 0.022 0.978 44 H 0.042 0.958 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.139 0.861 48 H 0.057 0.943 49 H 0.082 0.918 50 H 0.080 0.920 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.070 16.340 -3.386 31.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.120 4.120 3 C -0.105 4.105 4 C -0.137 4.137 5 C -0.053 4.053 6 C 0.355 3.645 7 O -0.417 6.417 8 N -0.314 5.314 9 C -0.012 4.012 10 C -0.148 4.148 11 C -0.074 4.074 12 C -0.160 4.160 13 C -0.004 4.004 14 N -0.338 5.338 15 C -0.450 4.450 16 H 0.094 0.906 17 C -0.224 4.224 18 N -0.568 5.568 19 Si 0.901 3.099 20 H -0.231 1.231 21 H -0.228 1.228 22 H -0.210 1.210 23 C 0.021 3.979 24 C -0.145 4.145 25 C -0.049 4.049 26 N -0.154 5.154 27 C -0.018 4.018 28 C -0.166 4.166 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.159 0.841 33 H 0.164 0.836 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.040 0.960 42 H 0.071 0.929 43 H 0.039 0.961 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.156 0.844 48 H 0.076 0.924 49 H 0.100 0.900 50 H 0.098 0.902 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.207 15.747 -4.458 30.054 hybrid contribution -1.292 0.776 1.358 2.029 sum -26.499 16.523 -3.100 31.382 Atomic orbital electron populations 1.20874 0.89869 1.03548 1.03008 1.20929 0.97779 0.93506 0.99789 1.21504 0.93557 0.98449 0.97000 1.22063 0.94923 0.98816 0.97852 1.21155 0.94217 0.89605 1.00368 1.17902 0.85722 0.82709 0.78141 1.90771 1.66019 1.36325 1.48607 1.47964 1.07996 1.17014 1.58460 1.21827 0.78852 0.99242 1.01327 1.21624 1.02041 0.92388 0.98723 1.21138 0.94145 0.96110 0.96006 1.22658 0.97803 0.99608 0.95981 1.21899 0.95893 0.94042 0.88590 1.44892 1.16063 1.54394 1.18459 1.20086 1.00966 1.25711 0.98261 0.90630 1.25762 0.91340 0.99034 1.06272 1.70935 1.25100 1.50625 1.10129 0.83891 0.73912 0.76100 0.76020 1.23073 1.22807 1.20974 1.21535 0.88063 0.91847 0.96440 1.21599 0.95105 0.96691 1.01148 1.22881 1.00492 0.85794 0.95748 1.67349 1.07459 1.29179 1.11421 1.21332 0.89396 0.95455 0.95658 1.20839 0.99362 0.92813 1.03615 0.90428 0.91106 0.90427 0.84086 0.83577 0.89193 0.91051 0.91920 0.89505 0.91474 0.91671 0.94047 0.96047 0.92940 0.96066 0.93997 0.90908 0.91567 0.84444 0.92426 0.89959 0.90181 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.43 9.62 36.00 0.35 -0.08 16 2 C -0.12 -0.81 5.91 -104.36 -0.62 -1.43 16 3 C -0.08 -0.57 9.85 -39.31 -0.39 -0.96 16 4 C -0.12 -1.13 9.63 -39.05 -0.38 -1.51 16 5 C 0.08 1.01 6.42 -83.01 -0.53 0.48 16 6 C 0.57 8.27 7.59 -12.18 -0.09 8.18 16 7 O -0.54 -9.19 15.96 5.36 0.09 -9.11 16 8 N -0.58 -8.10 2.96 -173.56 -0.51 -8.61 16 9 C 0.11 1.59 6.11 -3.63 -0.02 1.56 16 10 C -0.11 -1.77 4.87 -27.01 -0.13 -1.90 16 11 C -0.07 -1.18 0.55 -153.98 -0.08 -1.27 16 12 C -0.12 -2.06 4.92 -25.24 -0.12 -2.18 16 13 C 0.12 2.66 4.20 -2.96 -0.01 2.64 16 14 N -0.61 -15.11 3.32 -170.18 -0.56 -15.67 16 15 C -0.32 -9.41 10.49 -15.06 -0.16 -9.57 16 16 H 0.08 2.33 8.06 -52.48 -0.42 1.90 16 17 C -0.02 -0.73 5.47 -17.43 -0.10 -0.83 16 18 N -0.93 -29.64 13.70 55.49 0.76 -28.88 16 19 Si 1.07 27.33 24.74 -169.99 -4.21 23.12 16 20 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 21 H -0.30 -7.46 7.09 56.52 0.40 -7.05 16 22 H -0.28 -6.60 5.25 56.52 0.30 -6.30 16 23 C 0.15 2.98 6.16 -2.75 -0.02 2.96 16 24 C -0.11 -1.42 4.84 -27.01 -0.13 -1.55 16 25 C 0.07 0.89 5.86 -3.63 -0.02 0.87 16 26 N -0.44 -4.81 6.40 -6.06 -0.04 -4.85 16 27 C 0.12 1.01 6.78 -82.61 -0.56 0.45 16 28 C -0.11 -0.62 9.77 36.00 0.35 -0.27 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.19 8.09 -51.93 -0.42 -0.23 16 31 H 0.08 0.21 5.95 -51.93 -0.31 -0.10 16 32 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 33 H 0.15 1.35 7.80 -52.49 -0.41 0.94 16 34 H 0.09 1.36 7.03 -51.93 -0.36 0.99 16 35 H 0.07 0.99 6.55 -51.93 -0.34 0.65 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.60 7.82 -51.93 -0.41 1.19 16 38 H 0.07 1.01 6.17 -51.93 -0.32 0.69 16 39 H 0.06 1.00 7.98 -51.93 -0.41 0.59 16 40 H 0.04 0.96 6.99 -51.93 -0.36 0.60 16 41 H 0.02 0.51 4.12 -51.93 -0.21 0.29 16 42 H 0.26 8.25 8.73 -40.82 -0.36 7.89 16 43 H 0.02 0.43 8.00 -51.93 -0.42 0.02 16 44 H 0.04 0.87 8.03 -51.93 -0.42 0.46 16 45 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.14 1.58 3.86 -79.10 -0.31 1.28 16 48 H 0.06 0.68 7.62 -51.93 -0.40 0.29 16 49 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.08 0.28 5.94 -51.93 -0.31 -0.03 16 51 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -35.01 381.15 -9.44 -44.44 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -8.04 Total: -1.81 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.66 Total: -4.38 kcal Atomic # 7 Polarization: -57.66 SS G_CDS: -0.36 Total: -58.01 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 27.33 SS G_CDS: -4.21 Total: 23.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.01 -9.44 -44.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035206408.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.373 kcal (2) G-P(sol) polarization free energy of solvation -35.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds