Wall clock time and date at job start Wed Apr 1 2020 02:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38602 * 120.32082 * 2 1 4 4 N 1.31492 * 120.89749 * 180.02562 * 3 2 1 5 5 C 1.32738 * 121.64578 * 359.97438 * 4 3 2 6 6 C 1.48177 * 119.72492 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99950 * 190.01715 * 6 5 4 8 8 N 1.34775 * 119.99554 * 10.28599 * 6 5 4 9 9 C 1.46936 * 120.55011 * 187.19903 * 8 6 5 10 10 C 1.52870 * 108.94094 * 234.29882 * 9 8 6 11 11 C 1.52110 * 109.51855 * 306.94376 * 10 9 8 12 12 C 1.54391 * 110.51307 * 295.74725 * 11 10 9 13 13 C 1.54451 * 102.87479 * 276.66513 * 12 11 10 14 14 N 1.47086 * 107.29633 * 338.49750 * 13 12 11 15 15 C 1.36940 * 125.62759 * 179.01743 * 14 13 12 16 16 H 1.07997 * 119.99904 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00248 * 0.02562 * 15 14 13 18 18 N 1.31625 * 120.00025 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99991 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47251 * 90.00271 * 19 17 15 21 21 H 1.48507 * 109.47020 * 209.99911 * 19 17 15 22 22 H 1.48500 * 109.47192 * 329.99742 * 19 17 15 23 23 C 1.47570 * 108.74472 * 359.01236 * 14 13 12 24 24 C 1.52100 * 111.60325 * 59.15397 * 11 10 9 25 25 C 1.46927 * 120.55661 * 7.47254 * 8 6 5 26 26 C 1.39266 * 120.55537 * 0.27662 * 5 4 3 27 27 C 1.38582 * 120.32377 * 179.97438 * 2 1 3 28 28 C 1.50693 * 120.75801 * 0.03864 * 27 2 1 29 29 H 1.08999 * 109.47366 * 90.00184 * 1 2 3 30 30 H 1.09000 * 109.46740 * 209.99478 * 1 2 3 31 31 H 1.09000 * 109.47509 * 329.99265 * 1 2 3 32 32 H 1.08004 * 119.54775 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.59746 * 354.09970 * 9 8 6 34 34 H 1.08991 * 109.60064 * 114.58651 * 9 8 6 35 35 H 1.09006 * 109.54699 * 186.86195 * 10 9 8 36 36 H 1.08998 * 109.33003 * 66.88863 * 10 9 8 37 37 H 1.09000 * 110.73294 * 35.01226 * 12 11 10 38 38 H 1.09003 * 110.73222 * 158.31368 * 12 11 10 39 39 H 1.08994 * 109.88525 * 97.92312 * 13 12 11 40 40 H 1.09003 * 109.87642 * 219.07441 * 13 12 11 41 41 H 0.96995 * 119.99817 * 179.97438 * 18 17 15 42 42 H 1.09004 * 110.37436 * 264.49596 * 23 14 13 43 43 H 1.08996 * 110.37652 * 142.14459 * 23 14 13 44 44 H 1.09000 * 109.47506 * 180.71646 * 24 11 10 45 45 H 1.08999 * 109.47763 * 60.70152 * 24 11 10 46 46 H 1.09003 * 109.59864 * 245.41133 * 25 8 6 47 47 H 1.08997 * 109.60369 * 5.88673 * 25 8 6 48 48 H 1.08003 * 120.46873 * 179.70848 * 26 5 4 49 49 H 1.09010 * 109.47036 * 90.00152 * 28 27 2 50 50 H 1.08998 * 109.47343 * 209.99819 * 28 27 2 51 51 H 1.08997 * 109.47685 * 330.00509 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5216 1.2097 -0.0005 5 6 4.2294 0.0867 -0.0005 6 6 5.7097 0.1513 -0.0005 7 8 6.3619 -0.8576 -0.1836 8 7 6.3328 1.3280 0.2079 9 6 7.7900 1.4389 0.0553 10 6 8.3808 2.0196 1.3401 11 6 7.6634 3.3147 1.6893 12 6 7.9139 4.3820 0.6023 13 6 9.2789 4.9770 1.0123 14 7 9.4717 4.6853 2.4410 15 6 10.5695 5.0284 3.1842 16 1 10.6160 4.7671 4.2311 17 6 11.6226 5.7119 2.5921 18 7 11.5662 6.0299 1.3160 19 14 13.1204 6.1793 3.6057 20 1 14.1219 5.0847 3.5428 21 1 13.7159 7.4268 3.0629 22 1 12.7142 6.3981 5.0172 23 6 8.2868 3.9619 2.9414 24 6 6.1713 3.0931 1.8849 25 6 5.5671 2.5200 0.5973 26 6 3.5923 -1.1517 -0.0058 27 6 2.2067 -1.1962 0.0005 28 6 1.4780 -2.5153 0.0003 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6646 2.1305 -0.0004 33 1 8.2147 0.4517 -0.1268 34 1 8.0210 2.0989 -0.7807 35 1 9.4425 2.2199 1.1954 36 1 8.2533 1.3034 2.1518 37 1 7.9742 3.9217 -0.3839 38 1 7.1371 5.1463 0.6256 39 1 10.0752 4.5147 0.4290 40 1 9.2768 6.0551 0.8512 41 1 12.3018 6.5079 0.9024 42 1 7.5831 4.6572 3.3994 43 1 8.5842 3.1953 3.6568 44 1 5.6908 4.0427 2.1205 45 1 6.0123 2.3921 2.7043 46 1 5.6226 3.2655 -0.1960 47 1 4.5269 2.2454 0.7722 48 1 4.1696 -2.0645 -0.0105 49 1 1.3029 -2.8334 -1.0276 50 1 2.0810 -3.2636 0.5145 51 1 0.5230 -2.4030 0.5134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035209835.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:15 Heat of formation + Delta-G solvation = 37.573951 kcal Electronic energy + Delta-G solvation = -30649.937419 eV Core-core repulsion = 26743.176020 eV Total energy + Delta-G solvation = -3906.761400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.21335 -39.84029 -38.39262 -35.82662 -35.01747 -32.94619 -32.78235 -30.95951 -30.65073 -28.92032 -28.63690 -27.66378 -26.54810 -24.24607 -23.59877 -23.16206 -22.71402 -21.88392 -20.03710 -19.93848 -18.11143 -17.50049 -16.91943 -16.40115 -15.87323 -15.64343 -15.48503 -15.03198 -14.89254 -14.73340 -14.48324 -13.84168 -13.75448 -13.65898 -13.52698 -13.33809 -13.32909 -13.11686 -12.92473 -12.59358 -12.48447 -12.27035 -12.00927 -11.91784 -11.78486 -11.52548 -11.05631 -10.91102 -10.84530 -10.65262 -10.50661 -10.27016 -10.10718 -9.98784 -9.84660 -9.74877 -9.60292 -9.54299 -9.30231 -8.91181 -8.53226 -8.37072 -6.74055 -5.64568 -2.97096 0.36703 0.83029 2.59784 2.99697 3.43756 3.48700 3.50511 3.55626 3.88741 4.23192 4.29968 4.43539 4.46349 4.55590 4.80894 4.97578 5.02538 5.10411 5.13595 5.17853 5.21926 5.23720 5.32947 5.42189 5.47986 5.50210 5.54813 5.61219 5.63329 5.67994 5.79519 5.89641 5.93990 6.06118 6.13127 6.16361 6.21805 6.26417 6.34172 6.42950 6.48834 6.59704 6.64690 6.74014 6.81892 6.94992 7.07316 7.36199 7.55436 7.63727 7.72179 7.90381 8.15694 8.33398 9.29637 9.90069 10.57380 11.47035 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.028718 B = 0.002292 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.756140 B =12213.278816 C =12601.463421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C 0.096 3.904 4 N -0.446 5.446 5 C 0.082 3.918 6 C 0.566 3.434 7 O -0.543 6.543 8 N -0.581 5.581 9 C 0.109 3.891 10 C -0.108 4.108 11 C -0.072 4.072 12 C -0.136 4.136 13 C 0.180 3.820 14 N -0.605 5.605 15 C -0.224 4.224 16 H 0.076 0.924 17 C -0.010 4.010 18 N -0.922 5.922 19 Si 0.910 3.090 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.146 3.854 24 C -0.117 4.117 25 C 0.075 3.925 26 C -0.109 4.109 27 C -0.051 4.051 28 C -0.119 4.119 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.164 0.836 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.251 0.749 42 H 0.017 0.983 43 H 0.035 0.965 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.143 0.857 48 H 0.147 0.853 49 H 0.079 0.921 50 H 0.074 0.926 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.296 -13.645 -4.598 29.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.123 4.123 3 C -0.063 4.063 4 N -0.158 5.158 5 C -0.055 4.055 6 C 0.352 3.648 7 O -0.421 6.421 8 N -0.312 5.312 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.073 4.073 12 C -0.174 4.174 13 C 0.056 3.944 14 N -0.331 5.331 15 C -0.353 4.353 16 H 0.094 0.906 17 C -0.206 4.206 18 N -0.570 5.570 19 Si 0.741 3.259 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C 0.020 3.980 24 C -0.156 4.156 25 C -0.048 4.048 26 C -0.129 4.129 27 C -0.058 4.058 28 C -0.175 4.175 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.181 0.819 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.035 0.965 43 H 0.053 0.947 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.159 0.841 48 H 0.165 0.835 49 H 0.098 0.902 50 H 0.093 0.907 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -24.230 -13.263 -4.732 28.025 hybrid contribution 0.572 -0.199 0.531 0.806 sum -23.658 -13.461 -4.201 27.542 Atomic orbital electron populations 1.20831 0.89936 1.03529 1.02913 1.20997 0.97751 0.93589 1.00011 1.22895 0.89734 0.97804 0.95877 1.67623 1.07908 1.28805 1.11415 1.21210 0.94385 0.89586 1.00282 1.17888 0.85707 0.83478 0.77689 1.90759 1.65851 1.34197 1.51317 1.47994 1.08263 1.09528 1.65373 1.21738 0.78568 1.02219 0.98775 1.21521 1.01061 0.95833 0.96211 1.21049 0.93565 0.94894 0.97801 1.22912 1.00255 0.97053 0.97164 1.21133 0.90585 0.98039 0.84688 1.44517 1.16108 1.65817 1.06643 1.19052 0.93481 1.30065 0.92664 0.90635 1.24783 0.98556 1.01051 0.96227 1.69975 1.32048 1.45152 1.09858 0.86144 0.83045 0.77668 0.79066 1.21695 1.21766 1.20800 1.21483 0.89465 0.93609 0.93454 1.21773 0.95648 1.00822 0.97339 1.23056 0.99242 0.86165 0.96293 1.21979 0.94109 0.99040 0.97814 1.20211 0.93227 0.95892 0.96515 1.20890 1.00462 0.93015 1.03169 0.90497 0.90800 0.90822 0.81931 0.89394 0.90936 0.89451 0.92364 0.92304 0.92624 0.93814 0.94326 0.93887 0.96537 0.94673 0.90872 0.92453 0.91613 0.84069 0.83500 0.90234 0.90732 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.44 9.65 36.01 0.35 -0.09 16 2 C -0.12 -0.85 5.91 -104.36 -0.62 -1.47 16 3 C 0.10 0.78 10.86 -17.56 -0.19 0.59 16 4 N -0.45 -4.95 6.14 -9.80 -0.06 -5.01 16 5 C 0.08 1.03 6.57 -83.01 -0.55 0.49 16 6 C 0.57 8.68 7.65 -12.18 -0.09 8.58 16 7 O -0.54 -9.62 15.79 5.35 0.08 -9.54 16 8 N -0.58 -8.70 2.97 -173.86 -0.52 -9.21 16 9 C 0.11 1.71 6.11 -3.87 -0.02 1.69 16 10 C -0.11 -1.88 4.84 -27.25 -0.13 -2.01 16 11 C -0.07 -1.26 0.55 -154.10 -0.08 -1.35 16 12 C -0.14 -2.54 4.92 -25.24 -0.12 -2.67 16 13 C 0.18 4.41 5.00 -2.96 -0.01 4.40 16 14 N -0.60 -15.60 3.39 -170.32 -0.58 -16.18 16 15 C -0.22 -6.35 10.28 -15.06 -0.15 -6.51 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 18 N -0.92 -27.51 10.31 55.49 0.57 -26.94 16 19 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.15 3.09 6.15 -2.87 -0.02 3.07 16 24 C -0.12 -1.70 4.84 -27.01 -0.13 -1.83 16 25 C 0.07 1.00 5.63 -3.63 -0.02 0.98 16 26 C -0.11 -1.14 9.34 -39.05 -0.36 -1.51 16 27 C -0.05 -0.40 5.91 -104.35 -0.62 -1.01 16 28 C -0.12 -0.58 9.67 36.00 0.35 -0.23 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.22 6.06 -51.93 -0.31 -0.09 16 31 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 32 H 0.16 0.87 8.06 -52.48 -0.42 0.44 16 33 H 0.09 1.42 6.99 -51.93 -0.36 1.06 16 34 H 0.07 1.12 6.55 -51.93 -0.34 0.78 16 35 H 0.09 1.73 7.82 -51.93 -0.41 1.33 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.03 6.19 -51.93 -0.32 0.71 16 38 H 0.06 0.99 7.98 -51.93 -0.41 0.57 16 39 H 0.04 1.18 7.38 -51.93 -0.38 0.80 16 40 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.02 0.35 7.99 -51.93 -0.41 -0.06 16 43 H 0.04 0.74 8.02 -51.93 -0.42 0.33 16 44 H 0.07 1.01 8.09 -51.93 -0.42 0.58 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.89 7.62 -51.93 -0.40 0.49 16 47 H 0.14 1.76 3.98 -85.35 -0.34 1.42 16 48 H 0.15 1.51 7.67 -52.48 -0.40 1.11 16 49 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 50 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 51 H 0.08 0.26 6.07 -51.93 -0.32 -0.06 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -33.36 387.70 -10.34 -43.71 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -8.14 Total: -0.93 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -2.53 Total: 0.74 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.58 Total: -57.35 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.54 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.36 -10.34 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035209835.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.280 kcal (2) G-P(sol) polarization free energy of solvation -33.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds