Wall clock time and date at job start Wed Apr 1 2020 02:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38602 * 120.32082 * 2 1 4 4 N 1.31492 * 120.89749 * 180.02562 * 3 2 1 5 5 C 1.32738 * 121.64578 * 359.97438 * 4 3 2 6 6 C 1.48177 * 119.72492 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99950 * 190.01715 * 6 5 4 8 8 N 1.34775 * 119.99554 * 10.28599 * 6 5 4 9 9 C 1.46936 * 120.55011 * 187.19903 * 8 6 5 10 10 C 1.52870 * 108.94094 * 234.29882 * 9 8 6 11 11 C 1.52110 * 109.51855 * 306.94376 * 10 9 8 12 12 C 1.54391 * 110.51307 * 295.74725 * 11 10 9 13 13 C 1.54451 * 102.87479 * 276.66513 * 12 11 10 14 14 N 1.47086 * 107.29633 * 338.49750 * 13 12 11 15 15 C 1.36940 * 125.62759 * 179.01743 * 14 13 12 16 16 H 1.07997 * 119.99904 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00248 * 0.02562 * 15 14 13 18 18 N 1.31625 * 120.00025 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99991 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47251 * 90.00271 * 19 17 15 21 21 H 1.48507 * 109.47020 * 209.99911 * 19 17 15 22 22 H 1.48500 * 109.47192 * 329.99742 * 19 17 15 23 23 C 1.47570 * 108.74472 * 359.01236 * 14 13 12 24 24 C 1.52100 * 111.60325 * 59.15397 * 11 10 9 25 25 C 1.46927 * 120.55661 * 7.47254 * 8 6 5 26 26 C 1.39266 * 120.55537 * 0.27662 * 5 4 3 27 27 C 1.38582 * 120.32377 * 179.97438 * 2 1 3 28 28 C 1.50693 * 120.75801 * 0.03864 * 27 2 1 29 29 H 1.08999 * 109.47366 * 90.00184 * 1 2 3 30 30 H 1.09000 * 109.46740 * 209.99478 * 1 2 3 31 31 H 1.09000 * 109.47509 * 329.99265 * 1 2 3 32 32 H 1.08004 * 119.54775 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.59746 * 354.09970 * 9 8 6 34 34 H 1.08991 * 109.60064 * 114.58651 * 9 8 6 35 35 H 1.09006 * 109.54699 * 186.86195 * 10 9 8 36 36 H 1.08998 * 109.33003 * 66.88863 * 10 9 8 37 37 H 1.09000 * 110.73294 * 35.01226 * 12 11 10 38 38 H 1.09003 * 110.73222 * 158.31368 * 12 11 10 39 39 H 1.08994 * 109.88525 * 97.92312 * 13 12 11 40 40 H 1.09003 * 109.87642 * 219.07441 * 13 12 11 41 41 H 0.96995 * 119.99817 * 179.97438 * 18 17 15 42 42 H 1.09004 * 110.37436 * 264.49596 * 23 14 13 43 43 H 1.08996 * 110.37652 * 142.14459 * 23 14 13 44 44 H 1.09000 * 109.47506 * 180.71646 * 24 11 10 45 45 H 1.08999 * 109.47763 * 60.70152 * 24 11 10 46 46 H 1.09003 * 109.59864 * 245.41133 * 25 8 6 47 47 H 1.08997 * 109.60369 * 5.88673 * 25 8 6 48 48 H 1.08003 * 120.46873 * 179.70848 * 26 5 4 49 49 H 1.09010 * 109.47036 * 90.00152 * 28 27 2 50 50 H 1.08998 * 109.47343 * 209.99819 * 28 27 2 51 51 H 1.08997 * 109.47685 * 330.00509 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5216 1.2097 -0.0005 5 6 4.2294 0.0867 -0.0005 6 6 5.7097 0.1513 -0.0005 7 8 6.3619 -0.8576 -0.1836 8 7 6.3328 1.3280 0.2079 9 6 7.7900 1.4389 0.0553 10 6 8.3808 2.0196 1.3401 11 6 7.6634 3.3147 1.6893 12 6 7.9139 4.3820 0.6023 13 6 9.2789 4.9770 1.0123 14 7 9.4717 4.6853 2.4410 15 6 10.5695 5.0284 3.1842 16 1 10.6160 4.7671 4.2311 17 6 11.6226 5.7119 2.5921 18 7 11.5662 6.0299 1.3160 19 14 13.1204 6.1793 3.6057 20 1 14.1219 5.0847 3.5428 21 1 13.7159 7.4268 3.0629 22 1 12.7142 6.3981 5.0172 23 6 8.2868 3.9619 2.9414 24 6 6.1713 3.0931 1.8849 25 6 5.5671 2.5200 0.5973 26 6 3.5923 -1.1517 -0.0058 27 6 2.2067 -1.1962 0.0005 28 6 1.4780 -2.5153 0.0003 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.6646 2.1305 -0.0004 33 1 8.2147 0.4517 -0.1268 34 1 8.0210 2.0989 -0.7807 35 1 9.4425 2.2199 1.1954 36 1 8.2533 1.3034 2.1518 37 1 7.9742 3.9217 -0.3839 38 1 7.1371 5.1463 0.6256 39 1 10.0752 4.5147 0.4290 40 1 9.2768 6.0551 0.8512 41 1 12.3018 6.5079 0.9024 42 1 7.5831 4.6572 3.3994 43 1 8.5842 3.1953 3.6568 44 1 5.6908 4.0427 2.1205 45 1 6.0123 2.3921 2.7043 46 1 5.6226 3.2655 -0.1960 47 1 4.5269 2.2454 0.7722 48 1 4.1696 -2.0645 -0.0105 49 1 1.3029 -2.8334 -1.0276 50 1 2.0810 -3.2636 0.5145 51 1 0.5230 -2.4030 0.5134 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035209835.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:14 Heat of formation + Delta-G solvation = 18.535695 kcal Electronic energy + Delta-G solvation = -30650.762980 eV Core-core repulsion = 26743.176020 eV Total energy + Delta-G solvation = -3907.586960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.11896 -40.99178 -39.72359 -37.28698 -35.76812 -34.69379 -33.42082 -32.45818 -32.18465 -30.47174 -29.49647 -28.51152 -27.87794 -26.02079 -24.79245 -24.07141 -23.70596 -22.99397 -21.90398 -21.05314 -19.50643 -18.74975 -18.24004 -17.66136 -16.89452 -16.81149 -16.63526 -16.34920 -16.24384 -15.77220 -15.66477 -15.38033 -14.90567 -14.77747 -14.67646 -14.27412 -14.15927 -13.92332 -13.85839 -13.72636 -13.66210 -13.46555 -13.29630 -12.99239 -12.95666 -12.74902 -12.67628 -12.44049 -12.26664 -12.18128 -12.07398 -11.96455 -11.79192 -11.51829 -11.37144 -11.27174 -11.12967 -10.68968 -10.49807 -9.99512 -9.84724 -9.57685 -8.85954 -7.83757 -5.18352 -0.38998 0.19067 1.43885 1.46063 1.54563 1.63275 1.89973 2.49449 2.75351 3.04377 3.33897 3.57204 3.61461 3.74482 3.77613 3.85914 3.89406 3.92175 3.93262 4.12921 4.17701 4.29276 4.41655 4.53095 4.55126 4.63663 4.66800 4.68901 4.72456 4.73762 4.79465 4.80590 4.87671 4.92344 4.96238 5.02871 5.08218 5.09404 5.11729 5.16592 5.18734 5.32136 5.40825 5.43082 5.44961 5.46912 5.62982 5.71723 5.81326 5.85271 6.21452 6.34321 6.67917 7.04254 7.12208 7.79979 8.45311 9.26484 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.028718 B = 0.002292 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.756140 B =12213.278816 C =12601.463421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.108 4.108 3 C 0.092 3.908 4 N -0.461 5.461 5 C 0.053 3.947 6 C 0.562 3.438 7 O -0.579 6.579 8 N -0.584 5.584 9 C 0.117 3.883 10 C -0.100 4.100 11 C -0.059 4.059 12 C -0.118 4.118 13 C 0.190 3.810 14 N -0.625 5.625 15 C -0.239 4.239 16 H 0.079 0.921 17 C -0.068 4.068 18 N -0.951 5.951 19 Si 0.977 3.023 20 H -0.288 1.288 21 H -0.294 1.294 22 H -0.269 1.269 23 C 0.141 3.859 24 C -0.109 4.109 25 C 0.079 3.921 26 C -0.118 4.118 27 C -0.053 4.053 28 C -0.118 4.118 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.195 0.805 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.006 0.994 40 H 0.002 0.998 41 H 0.245 0.755 42 H 0.027 0.973 43 H 0.032 0.968 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.161 0.839 48 H 0.138 0.862 49 H 0.090 0.910 50 H 0.073 0.927 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.284 -14.103 -4.124 32.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.110 4.110 3 C -0.067 4.067 4 N -0.173 5.173 5 C -0.082 4.082 6 C 0.350 3.650 7 O -0.460 6.460 8 N -0.314 5.314 9 C -0.006 4.006 10 C -0.138 4.138 11 C -0.060 4.060 12 C -0.156 4.156 13 C 0.065 3.935 14 N -0.351 5.351 15 C -0.368 4.368 16 H 0.097 0.903 17 C -0.261 4.261 18 N -0.600 5.600 19 Si 0.806 3.194 20 H -0.215 1.215 21 H -0.220 1.220 22 H -0.194 1.194 23 C 0.016 3.984 24 C -0.147 4.147 25 C -0.042 4.042 26 C -0.139 4.139 27 C -0.061 4.061 28 C -0.174 4.174 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.212 0.788 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.025 0.975 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.109 0.891 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.177 0.823 48 H 0.156 0.844 49 H 0.108 0.892 50 H 0.092 0.908 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -28.254 -13.733 -4.235 31.699 hybrid contribution 1.686 -0.101 0.392 1.734 sum -26.568 -13.834 -3.844 30.200 Atomic orbital electron populations 1.20952 0.87126 1.04974 1.04079 1.21415 0.99625 0.92697 0.97277 1.23475 0.88771 0.99676 0.94802 1.67369 1.09412 1.28236 1.12289 1.20799 0.92725 0.90932 1.03709 1.18396 0.87172 0.82814 0.76620 1.90723 1.67064 1.35289 1.52877 1.48059 1.07631 1.10202 1.65500 1.21524 0.79687 1.01624 0.97751 1.21379 0.99289 0.96002 0.97134 1.20971 0.95743 0.93972 0.95307 1.22759 0.97126 0.97594 0.98138 1.20870 0.92785 0.95757 0.84067 1.44807 1.16903 1.66206 1.07165 1.19437 0.94544 1.29655 0.93183 0.90326 1.25635 1.01512 1.01570 0.97404 1.70202 1.32551 1.45918 1.11371 0.85095 0.79327 0.76913 0.78111 1.21472 1.22025 1.19388 1.21686 0.88243 0.93430 0.95008 1.21738 0.92779 1.01967 0.98236 1.23202 0.99882 0.85507 0.95617 1.22031 0.95514 0.98051 0.98311 1.20559 0.92178 0.97803 0.95532 1.20980 1.00985 0.91346 1.04127 0.89204 0.89534 0.89302 0.78829 0.90236 0.90649 0.92653 0.92485 0.90847 0.90695 0.97527 0.97974 0.94529 0.95517 0.94959 0.89118 0.92062 0.91180 0.82340 0.84398 0.89179 0.90789 0.88392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.33 9.65 71.24 0.69 0.36 16 2 C -0.11 -1.12 5.91 -19.69 -0.12 -1.24 16 3 C 0.09 1.18 10.86 84.83 0.92 2.11 16 4 N -0.46 -9.25 6.14 -184.91 -1.14 -10.38 16 5 C 0.05 1.30 6.57 41.90 0.28 1.58 16 6 C 0.56 17.35 7.65 86.88 0.66 18.01 16 7 O -0.58 -21.25 15.79 -3.76 -0.06 -21.30 16 8 N -0.58 -17.24 2.97 -822.26 -2.44 -19.68 16 9 C 0.12 3.75 6.11 86.25 0.53 4.27 16 10 C -0.10 -3.55 4.84 30.26 0.15 -3.40 16 11 C -0.06 -2.04 0.55 -51.92 -0.03 -2.06 16 12 C -0.12 -4.40 4.92 31.56 0.16 -4.24 16 13 C 0.19 9.69 5.00 86.76 0.43 10.12 16 14 N -0.62 -33.14 3.39 -692.76 -2.35 -35.48 16 15 C -0.24 -13.88 10.28 84.03 0.86 -13.01 16 16 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 17 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 18 N -0.95 -59.02 10.31 21.65 0.22 -58.80 16 19 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 20 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 21 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 C 0.14 5.97 6.15 86.55 0.53 6.50 16 24 C -0.11 -2.92 4.84 30.41 0.15 -2.77 16 25 C 0.08 1.97 5.63 86.41 0.49 2.46 16 26 C -0.12 -2.40 9.34 22.61 0.21 -2.19 16 27 C -0.05 -0.70 5.91 -19.69 -0.12 -0.82 16 28 C -0.12 -0.80 9.67 71.23 0.69 -0.11 16 29 H 0.09 0.12 8.14 -2.39 -0.02 0.11 16 30 H 0.09 0.08 6.06 -2.39 -0.01 0.07 16 31 H 0.09 0.05 8.09 -2.39 -0.02 0.03 16 32 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 33 H 0.08 2.70 6.99 -2.39 -0.02 2.68 16 34 H 0.08 2.36 6.55 -2.39 -0.02 2.35 16 35 H 0.05 2.32 7.82 -2.38 -0.02 2.30 16 36 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.07 2.53 6.19 -2.39 -0.01 2.52 16 38 H 0.07 2.53 7.98 -2.39 -0.02 2.51 16 39 H 0.01 0.37 7.38 -2.39 -0.02 0.36 16 40 H 0.00 0.12 7.50 -2.39 -0.02 0.10 16 41 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 42 H 0.03 1.10 7.99 -2.38 -0.02 1.08 16 43 H 0.03 1.37 8.02 -2.39 -0.02 1.35 16 44 H 0.09 2.18 8.09 -2.39 -0.02 2.16 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.07 1.71 7.62 -2.39 -0.02 1.69 16 47 H 0.16 3.56 3.98 -68.38 -0.27 3.28 16 48 H 0.14 2.93 7.67 -2.91 -0.02 2.90 16 49 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 50 H 0.07 0.53 8.10 -2.39 -0.02 0.51 16 51 H 0.10 0.26 6.07 -2.39 -0.01 0.24 16 Total: -1.00 -76.52 387.70 3.88 -72.64 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.67 Total: 11.63 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: 6.95 Total: 12.00 kcal Atomic # 7 Polarization: -118.65 SS G_CDS: -5.70 Total: -124.35 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.06 Total: -21.30 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -76.52 3.88 -72.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035209835.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.174 kcal (2) G-P(sol) polarization free energy of solvation -76.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds