Wall clock time and date at job start Wed Apr 1 2020 02:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38605 * 120.32634 * 2 1 4 4 N 1.31494 * 120.90499 * 179.69937 * 3 2 1 5 5 C 1.32745 * 121.64088 * 0.55896 * 4 3 2 6 6 C 1.48164 * 119.72545 * 179.70764 * 5 4 3 7 7 O 1.21520 * 119.99733 * 103.32280 * 6 5 4 8 8 N 1.34775 * 120.00413 * 283.32768 * 6 5 4 9 9 C 1.46938 * 120.55503 * 184.97722 * 8 6 5 10 10 C 1.53341 * 108.68389 * 125.62597 * 9 8 6 11 11 C 1.52111 * 109.43839 * 53.30958 * 10 9 8 12 12 C 1.54385 * 110.51349 * 64.08916 * 11 10 9 13 13 C 1.54454 * 102.87228 * 83.32502 * 12 11 10 14 14 N 1.47083 * 107.29274 * 21.50943 * 13 12 11 15 15 C 1.36943 * 125.62733 * 180.96286 * 14 13 12 16 16 H 1.07994 * 119.99947 * 179.61204 * 15 14 13 17 17 C 1.38812 * 119.99488 * 359.60523 * 15 14 13 18 18 N 1.31621 * 119.99262 * 160.45711 * 17 15 14 19 19 Si 1.86791 * 120.00572 * 340.46010 * 17 15 14 20 20 H 1.48501 * 109.47413 * 186.02072 * 19 17 15 21 21 H 1.48500 * 109.47483 * 306.02410 * 19 17 15 22 22 H 1.48505 * 109.46958 * 66.02293 * 19 17 15 23 23 C 1.47574 * 108.74394 * 1.23033 * 14 13 12 24 24 C 1.52107 * 111.60201 * 300.69024 * 11 10 9 25 25 C 1.46928 * 120.54895 * 4.96134 * 8 6 5 26 26 C 1.39269 * 120.55497 * 359.44112 * 5 4 3 27 27 C 1.50699 * 120.47071 * 180.24832 * 26 5 4 28 28 C 1.38582 * 120.32886 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47715 * 270.02732 * 1 2 3 30 30 H 1.09003 * 109.47245 * 30.03087 * 1 2 3 31 31 H 1.09006 * 109.47120 * 150.02589 * 1 2 3 32 32 H 1.08005 * 119.54339 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.59833 * 5.87465 * 9 8 6 34 34 H 1.08997 * 109.60363 * 245.39207 * 9 8 6 35 35 H 1.08998 * 109.47635 * 293.31776 * 10 9 8 36 36 H 1.08997 * 109.47280 * 173.29708 * 10 9 8 37 37 H 1.09011 * 110.73105 * 324.98640 * 12 11 10 38 38 H 1.09000 * 110.73698 * 201.67864 * 12 11 10 39 39 H 1.08995 * 109.88461 * 262.08330 * 13 12 11 40 40 H 1.09004 * 109.87909 * 140.93281 * 13 12 11 41 41 H 0.96997 * 120.00438 * 5.01371 * 18 17 15 42 42 H 1.08997 * 110.37831 * 95.25967 * 23 14 13 43 43 H 1.09004 * 110.37561 * 217.60775 * 23 14 13 44 44 H 1.08998 * 109.47985 * 179.29563 * 24 11 10 45 45 H 1.09001 * 109.47181 * 299.31356 * 24 11 10 46 46 H 1.08993 * 109.60563 * 354.12684 * 25 8 6 47 47 H 1.08999 * 109.60122 * 114.60823 * 25 8 6 48 48 H 1.09006 * 109.46904 * 94.84537 * 27 26 5 49 49 H 1.08998 * 109.47294 * 214.83952 * 27 26 5 50 50 H 1.08999 * 109.47163 * 334.84309 * 27 26 5 51 51 H 1.08003 * 120.75308 * 0.04518 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1964 0.0000 4 7 3.5216 1.2097 0.0059 5 6 4.2294 0.0867 0.0011 6 6 5.7097 0.1512 0.0015 7 8 6.3271 -0.0691 1.0247 8 7 6.3714 0.4543 -1.1328 9 6 7.8397 0.4154 -1.1742 10 6 8.2746 -0.4976 -2.3269 11 6 7.6001 -0.0452 -3.6130 12 6 8.0740 1.3714 -4.0031 13 6 9.4015 1.0984 -4.7440 14 7 9.3664 -0.2984 -5.2035 15 6 10.3652 -0.9385 -5.8875 16 1 10.2453 -1.9721 -6.1765 17 6 11.5318 -0.2585 -6.2096 18 7 12.6238 -0.9301 -6.5077 19 14 11.5518 1.6093 -6.2199 20 1 12.8608 2.0875 -6.7328 21 1 10.4633 2.1112 -7.0965 22 1 11.3473 2.1140 -4.8383 23 6 8.0745 -0.8943 -4.8114 24 6 6.0842 -0.0863 -3.4948 25 6 5.6365 0.8289 -2.3487 26 6 3.5923 -1.1517 0.0012 27 6 4.3977 -2.4255 0.0013 28 6 2.2067 -1.1962 0.0005 29 1 -0.3635 0.0005 1.0277 30 1 -0.3634 0.8897 -0.5143 31 1 -0.3634 -0.8903 -0.5135 32 1 1.6646 2.1305 -0.0004 33 1 8.2217 0.0220 -0.2321 34 1 8.2277 1.4208 -1.3375 35 1 7.9844 -1.5248 -2.1062 36 1 9.3567 -0.4429 -2.4453 37 1 8.2460 1.9791 -3.1146 38 1 7.3535 1.8506 -4.6660 39 1 10.2417 1.2442 -4.0652 40 1 9.4930 1.7678 -5.5994 41 1 12.5956 -1.8974 -6.5736 42 1 7.3610 -0.8280 -5.6328 43 1 8.2115 -1.9327 -4.5096 44 1 5.6374 0.2555 -4.4285 45 1 5.7632 -1.1078 -3.2908 46 1 4.5664 0.7081 -2.1811 47 1 5.8545 1.8662 -2.6027 48 1 4.5185 -2.7789 1.0254 49 1 3.8791 -3.1834 -0.5857 50 1 5.3781 -2.2355 -0.4356 51 1 1.6845 -2.1415 0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035210418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:34 Heat of formation + Delta-G solvation = 31.202591 kcal Electronic energy + Delta-G solvation = -31157.745171 eV Core-core repulsion = 27250.707489 eV Total energy + Delta-G solvation = -3907.037683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.27237 -40.05387 -38.62727 -36.05351 -34.13297 -34.02384 -33.12082 -31.31758 -31.21622 -29.05374 -28.35750 -27.85975 -26.99995 -24.38511 -23.70639 -23.21175 -22.87924 -21.83908 -20.60904 -20.11828 -18.56500 -17.76166 -17.35036 -16.98391 -16.47557 -15.46018 -15.29549 -15.19505 -15.07498 -14.73505 -14.64384 -13.91225 -13.80404 -13.65299 -13.63046 -13.51110 -13.35322 -13.16461 -13.06816 -12.85769 -12.82078 -12.78671 -12.52850 -12.27959 -11.98562 -11.79830 -11.46426 -11.25463 -11.15260 -10.93784 -10.48206 -10.36134 -10.29811 -10.21880 -9.99127 -9.81120 -9.69973 -9.43932 -9.12909 -8.92307 -8.68566 -8.57487 -6.99883 -6.28700 -3.14456 0.50571 0.84321 2.33758 2.75330 3.28386 3.41730 3.50424 3.71547 3.91435 4.19928 4.28156 4.47676 4.52975 4.62845 4.70221 4.71616 4.76229 4.88547 4.97032 5.02822 5.07601 5.12383 5.17470 5.26988 5.28353 5.31094 5.33920 5.42783 5.46217 5.55797 5.64563 5.70699 5.71344 5.74146 5.77799 5.81078 5.84255 5.93381 5.97838 6.04940 6.21460 6.25799 6.32546 6.35460 6.44741 6.52950 6.66051 6.77686 6.82421 7.22566 7.47034 7.69020 7.94201 8.35933 9.08543 9.61841 10.28258 11.22657 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.002666 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.281189 B =10501.935431 C =10566.760955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.123 4.123 3 C 0.094 3.906 4 N -0.451 5.451 5 C 0.090 3.910 6 C 0.580 3.420 7 O -0.531 6.531 8 N -0.592 5.592 9 C 0.110 3.890 10 C -0.111 4.111 11 C -0.072 4.072 12 C -0.122 4.122 13 C 0.103 3.897 14 N -0.612 5.612 15 C -0.323 4.323 16 H 0.077 0.923 17 C -0.026 4.026 18 N -0.928 5.928 19 Si 1.072 2.928 20 H -0.303 1.303 21 H -0.300 1.300 22 H -0.281 1.281 23 C 0.150 3.850 24 C -0.117 4.117 25 C 0.115 3.885 26 C -0.092 4.092 27 C -0.116 4.116 28 C -0.080 4.080 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.161 0.839 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.030 0.970 41 H 0.260 0.740 42 H 0.021 0.979 43 H 0.043 0.957 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.071 0.929 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.094 1.806 13.215 29.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.125 4.125 3 C -0.065 4.065 4 N -0.160 5.160 5 C -0.049 4.049 6 C 0.366 3.634 7 O -0.407 6.407 8 N -0.325 5.325 9 C -0.011 4.011 10 C -0.149 4.149 11 C -0.073 4.073 12 C -0.160 4.160 13 C -0.022 4.022 14 N -0.339 5.339 15 C -0.450 4.450 16 H 0.095 0.905 17 C -0.225 4.225 18 N -0.570 5.570 19 Si 0.907 3.093 20 H -0.231 1.231 21 H -0.229 1.229 22 H -0.209 1.209 23 C 0.024 3.976 24 C -0.156 4.156 25 C -0.008 4.008 26 C -0.095 4.095 27 C -0.173 4.173 28 C -0.105 4.105 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.178 0.822 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.070 0.930 42 H 0.039 0.961 43 H 0.061 0.939 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.094 0.906 50 H 0.090 0.910 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -24.191 3.744 13.504 27.956 hybrid contribution -1.652 -2.066 -0.071 2.646 sum -25.842 1.677 13.433 29.173 Atomic orbital electron populations 1.20761 0.89790 1.03462 1.02861 1.21114 0.97838 0.94021 0.99504 1.22715 0.89228 0.97756 0.96848 1.67669 1.08464 1.29565 1.10317 1.20893 0.94311 0.89371 1.00309 1.17886 0.85600 0.76416 0.83514 1.90798 1.68060 1.50061 1.31736 1.48046 1.07515 1.66327 1.10584 1.21843 0.77852 1.00911 1.00491 1.21655 1.02088 0.98615 0.92570 1.21104 0.93385 0.96774 0.96001 1.22649 0.97698 0.95893 0.99738 1.22106 0.96130 0.87618 0.96335 1.44854 1.15114 1.07681 1.66290 1.20108 0.95090 0.96030 1.33769 0.90496 1.25732 0.90833 1.06583 0.99400 1.70922 1.25509 1.08857 1.51750 0.83855 0.73507 0.75713 0.76250 1.23148 1.22923 1.20859 1.21499 0.87974 0.95653 0.92521 1.21755 0.95871 0.99931 0.98007 1.21766 0.95807 0.99312 0.83949 1.20802 0.94568 0.95702 0.98389 1.20823 0.99653 0.93481 1.03376 1.21355 0.92743 0.98620 0.97813 0.90588 0.90834 0.91070 0.82174 0.88913 0.90761 0.91798 0.89205 0.91268 0.91588 0.93186 0.95295 0.92957 0.96115 0.93875 0.90408 0.91601 0.90536 0.90614 0.90026 0.90552 0.91009 0.84184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.44 10.03 36.00 0.36 -0.08 16 2 C -0.12 -0.88 5.91 -104.36 -0.62 -1.49 16 3 C 0.09 0.82 10.86 -17.56 -0.19 0.63 16 4 N -0.45 -5.39 9.88 -9.80 -0.10 -5.49 16 5 C 0.09 1.13 4.66 -83.01 -0.39 0.74 16 6 C 0.58 8.42 5.71 -12.18 -0.07 8.35 16 7 O -0.53 -9.30 16.53 5.35 0.09 -9.21 16 8 N -0.59 -7.82 2.96 -173.57 -0.51 -8.33 16 9 C 0.11 1.51 6.11 -3.63 -0.02 1.49 16 10 C -0.11 -1.66 4.87 -27.01 -0.13 -1.79 16 11 C -0.07 -1.08 0.55 -153.99 -0.08 -1.17 16 12 C -0.12 -1.94 4.92 -25.24 -0.12 -2.07 16 13 C 0.10 2.19 4.24 -2.96 -0.01 2.17 16 14 N -0.61 -14.68 3.37 -170.18 -0.57 -15.25 16 15 C -0.32 -9.21 10.55 -15.06 -0.16 -9.37 16 16 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 17 C -0.03 -0.78 5.49 -17.43 -0.10 -0.88 16 18 N -0.93 -29.37 13.70 55.49 0.76 -28.61 16 19 Si 1.07 26.96 24.53 -169.99 -4.17 22.79 16 20 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 21 H -0.30 -7.30 6.71 56.52 0.38 -6.92 16 22 H -0.28 -6.42 5.22 56.52 0.30 -6.12 16 23 C 0.15 2.88 6.16 -2.75 -0.02 2.87 16 24 C -0.12 -1.41 4.84 -27.01 -0.13 -1.54 16 25 C 0.11 1.31 6.08 -3.63 -0.02 1.29 16 26 C -0.09 -0.94 5.93 -104.09 -0.62 -1.56 16 27 C -0.12 -1.06 9.71 36.00 0.35 -0.71 16 28 C -0.08 -0.62 9.55 -39.31 -0.38 -0.99 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 31 H 0.07 0.22 8.09 -51.93 -0.42 -0.20 16 32 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.09 1.33 7.02 -51.93 -0.36 0.97 16 34 H 0.07 0.98 6.55 -51.93 -0.34 0.64 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 1.56 7.82 -51.93 -0.41 1.15 16 37 H 0.07 0.99 6.17 -51.92 -0.32 0.67 16 38 H 0.07 0.96 7.98 -51.93 -0.41 0.55 16 39 H 0.05 1.13 5.97 -51.93 -0.31 0.82 16 40 H 0.03 0.66 4.46 -51.93 -0.23 0.43 16 41 H 0.26 8.15 8.73 -40.82 -0.36 7.79 16 42 H 0.02 0.40 8.00 -51.93 -0.42 -0.01 16 43 H 0.04 0.85 8.03 -51.93 -0.42 0.43 16 44 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 0.84 6.00 -51.93 -0.31 0.53 16 47 H 0.08 0.84 7.62 -51.93 -0.40 0.45 16 48 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 50 H 0.07 0.77 6.91 -51.93 -0.36 0.41 16 51 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 LS Contribution 386.57 15.07 5.83 5.83 Total: -1.00 -34.95 386.57 -9.23 -44.18 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -8.21 Total: -1.80 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -2.34 Total: -4.10 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.42 Total: -57.69 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 26.96 SS G_CDS: -4.17 Total: 22.79 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.95 -9.23 -44.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035210418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.385 kcal (2) G-P(sol) polarization free energy of solvation -34.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds