Wall clock time and date at job start Wed Apr 1 2020 02:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38232 * 120.41975 * 2 1 4 4 N 1.31853 * 120.76506 * 179.97438 * 3 2 1 5 5 C 1.31885 * 121.72315 * 359.97438 * 4 3 2 6 6 C 1.38176 * 120.76933 * 0.02562 * 5 4 3 7 7 C 1.50700 * 120.42329 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.46913 * 90.00042 * 7 6 5 9 9 O 1.21279 * 120.00025 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00023 * 180.02562 * 8 7 6 11 11 C 1.46939 * 120.55029 * 179.97438 * 10 8 7 12 12 C 1.53338 * 108.68132 * 125.62962 * 11 10 8 13 13 C 1.52111 * 109.44180 * 53.30476 * 12 11 10 14 14 C 1.54385 * 110.50977 * 64.08965 * 13 12 11 15 15 C 1.54461 * 102.87415 * 83.32987 * 14 13 12 16 16 N 1.47086 * 107.29333 * 21.50444 * 15 14 13 17 17 C 1.36929 * 125.62650 * 180.97034 * 16 15 14 18 18 H 1.08001 * 120.00345 * 185.86974 * 17 16 15 19 19 C 1.38816 * 120.00222 * 5.86122 * 17 16 15 20 20 N 1.31623 * 119.99709 * 7.33435 * 19 17 16 21 21 Si 1.86798 * 120.00107 * 187.33153 * 19 17 16 22 22 H 1.48503 * 109.47224 * 265.01306 * 21 19 17 23 23 H 1.48501 * 109.47180 * 25.01705 * 21 19 17 24 24 H 1.48501 * 109.46791 * 145.01623 * 21 19 17 25 25 C 1.47573 * 108.74182 * 1.23336 * 16 15 14 26 26 C 1.52103 * 111.59848 * 300.68868 * 13 12 11 27 27 C 1.46921 * 120.55119 * 359.97438 * 10 8 7 28 28 C 1.38621 * 120.42177 * 180.24283 * 2 1 3 29 29 H 1.09005 * 109.47102 * 90.00153 * 1 2 3 30 30 H 1.08997 * 109.47848 * 210.00400 * 1 2 3 31 31 H 1.09001 * 109.47482 * 330.00831 * 1 2 3 32 32 H 1.07998 * 119.61504 * 359.94739 * 3 2 1 33 33 H 1.08004 * 119.61708 * 179.97438 * 5 4 3 34 34 H 1.08994 * 109.47154 * 330.00668 * 7 6 5 35 35 H 1.08996 * 109.47837 * 209.99778 * 7 6 5 36 36 H 1.09003 * 109.60110 * 5.86966 * 11 10 8 37 37 H 1.09000 * 109.59993 * 245.38931 * 11 10 8 38 38 H 1.08997 * 109.47928 * 293.31410 * 12 11 10 39 39 H 1.09004 * 109.48015 * 173.29647 * 12 11 10 40 40 H 1.09004 * 110.73525 * 324.98611 * 14 13 12 41 41 H 1.08998 * 110.73289 * 201.67461 * 14 13 12 42 42 H 1.09000 * 109.87788 * 262.08039 * 15 14 13 43 43 H 1.08993 * 109.88054 * 140.92773 * 15 14 13 44 44 H 0.96994 * 119.99782 * 179.97438 * 20 19 17 45 45 H 1.08995 * 110.37855 * 95.26113 * 25 16 15 46 46 H 1.09000 * 110.37261 * 217.60778 * 25 16 15 47 47 H 1.09002 * 109.47068 * 179.29405 * 26 13 12 48 48 H 1.08994 * 109.47682 * 299.31213 * 26 13 12 49 49 H 1.09003 * 109.60486 * 354.12709 * 27 10 8 50 50 H 1.09002 * 109.60646 * 114.60461 * 27 10 8 51 51 H 1.08004 * 120.79072 * 0.03524 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5253 1.2000 0.0005 5 6 4.2256 0.0824 0.0015 6 6 3.5948 -1.1470 0.0016 7 6 4.4026 -2.4192 0.0022 8 6 4.6713 -2.8429 1.4232 9 8 4.2481 -2.1776 2.3447 10 7 5.3820 -3.9612 1.6701 11 6 5.6516 -4.3853 3.0509 12 6 5.1716 -5.8314 3.2232 13 6 5.7931 -6.7032 2.1427 14 6 7.3277 -6.7525 2.3035 15 6 7.5270 -7.8540 3.3678 16 7 6.3172 -8.6906 3.3629 17 6 6.0888 -9.7673 4.1776 18 1 5.2086 -10.3764 4.0335 19 6 6.9885 -10.0761 5.1885 20 7 7.9820 -9.2560 5.4584 21 14 6.7893 -11.6555 6.1659 22 1 6.0309 -11.3745 7.4114 23 1 6.0502 -12.6524 5.3504 24 1 8.1286 -12.1950 6.5130 25 6 5.3931 -8.1820 2.3309 26 6 5.4184 -6.2207 0.7497 27 6 5.8999 -4.7765 0.5630 28 6 2.2088 -1.1954 -0.0051 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3635 -0.8899 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.6674 2.1276 -0.0009 33 1 5.3046 0.1286 0.0015 34 1 5.3488 -2.2490 -0.5112 35 1 3.8463 -3.2032 -0.5116 36 1 5.1152 -3.7369 3.7439 37 1 6.7221 -4.3292 3.2482 38 1 4.0855 -5.8664 3.1384 39 1 5.4717 -6.1995 4.2043 40 1 7.7091 -5.7963 2.6619 41 1 7.8053 -7.0322 1.3645 42 1 7.6602 -7.4007 4.3500 43 1 8.3974 -8.4597 3.1158 44 1 8.6105 -9.4716 6.1650 45 1 5.5225 -8.7342 1.4001 46 1 4.3618 -8.2547 2.6760 47 1 5.8908 -6.8604 0.0043 48 1 4.3358 -6.2613 0.6300 49 1 5.5273 -4.3863 -0.3841 50 1 6.9896 -4.7507 0.5684 51 1 1.6887 -2.1419 -0.0096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035214183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:17 Heat of formation + Delta-G solvation = 18.456357 kcal Electronic energy + Delta-G solvation = -30229.780660 eV Core-core repulsion = 26322.190259 eV Total energy + Delta-G solvation = -3907.590401 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.85431 -40.12629 -38.58002 -35.81735 -33.94773 -33.81200 -33.05775 -31.19637 -30.78650 -28.79863 -28.36677 -27.56104 -26.57554 -24.21548 -23.68332 -23.11472 -22.65672 -21.60185 -20.12817 -19.63123 -17.97814 -17.24943 -17.20295 -16.95467 -16.50560 -15.96888 -15.29003 -15.03623 -14.65562 -14.60273 -14.47203 -13.94595 -13.84665 -13.63256 -13.50176 -13.37593 -13.27965 -12.95383 -12.85067 -12.79971 -12.68844 -12.27875 -12.17858 -11.96615 -11.75052 -11.57250 -11.20110 -11.06299 -10.88010 -10.68916 -10.58299 -10.20686 -10.08019 -10.04539 -9.81924 -9.71259 -9.67539 -9.66163 -9.56126 -9.01182 -8.61829 -8.54376 -6.80880 -5.69915 -3.05634 0.85296 1.06467 2.55780 2.95582 3.39082 3.44834 3.46616 3.58082 4.13705 4.38147 4.45330 4.48134 4.49457 4.71263 4.73201 4.77842 4.85042 4.92501 5.01781 5.08293 5.15038 5.21843 5.23790 5.38827 5.40377 5.42507 5.48180 5.53345 5.55380 5.68174 5.68702 5.85337 5.92409 5.94242 5.97658 6.00485 6.08225 6.12638 6.17941 6.30614 6.44083 6.47851 6.53330 6.59696 6.67967 6.81626 6.94839 7.38783 7.49307 7.65981 7.76010 7.83179 8.12500 8.27525 9.21662 9.82887 10.49382 11.39242 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.026175 B = 0.002102 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.448798 B =13319.054608 C =13558.119731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.137 4.137 3 C 0.094 3.906 4 N -0.481 5.481 5 C 0.106 3.894 6 C -0.109 4.109 7 C -0.098 4.098 8 C 0.514 3.486 9 O -0.539 6.539 10 N -0.606 5.606 11 C 0.112 3.888 12 C -0.109 4.109 13 C -0.071 4.071 14 C -0.136 4.136 15 C 0.173 3.827 16 N -0.603 5.603 17 C -0.227 4.227 18 H 0.076 0.924 19 C -0.009 4.009 20 N -0.919 5.919 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.282 1.282 24 H -0.291 1.291 25 C 0.146 3.854 26 C -0.117 4.117 27 C 0.107 3.893 28 C -0.063 4.063 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.025 0.975 44 H 0.251 0.749 45 H 0.018 0.982 46 H 0.036 0.964 47 H 0.076 0.924 48 H 0.063 0.937 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.284 16.692 -15.783 24.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.139 4.139 3 C -0.064 4.064 4 N -0.188 5.188 5 C -0.051 4.051 6 C -0.111 4.111 7 C -0.139 4.139 8 C 0.302 3.698 9 O -0.416 6.416 10 N -0.339 5.339 11 C -0.010 4.010 12 C -0.147 4.147 13 C -0.072 4.072 14 C -0.174 4.174 15 C 0.048 3.952 16 N -0.329 5.329 17 C -0.355 4.355 18 H 0.093 0.907 19 C -0.205 4.205 20 N -0.567 5.567 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.207 1.207 24 H -0.217 1.217 25 C 0.020 3.980 26 C -0.156 4.156 27 C -0.016 4.016 28 C -0.089 4.089 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.062 0.938 45 H 0.035 0.965 46 H 0.054 0.946 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.943 17.739 -15.092 24.948 hybrid contribution -0.350 -1.920 0.556 2.029 sum -9.293 15.819 -14.536 23.407 Atomic orbital electron populations 1.20717 0.90188 1.03287 1.02492 1.20896 0.97585 0.94069 1.01350 1.22641 0.89992 0.97408 0.96316 1.67666 1.08369 1.31057 1.11738 1.22550 1.00129 0.87095 0.95331 1.20308 0.94289 0.95465 1.01073 1.20644 1.01688 0.95889 0.95671 1.20400 0.77993 0.80525 0.90898 1.90720 1.51170 1.53452 1.46268 1.48163 1.53414 1.24322 1.08017 1.21761 1.01094 0.96237 0.81890 1.21608 0.99738 0.92771 1.00570 1.21065 0.96491 0.96399 0.93221 1.22912 0.94060 1.00210 1.00265 1.21225 0.88862 0.89332 0.95767 1.44498 1.15498 1.33410 1.39491 1.19030 1.06625 1.02028 1.07854 0.90652 1.24793 0.98167 0.98891 0.98659 1.69954 1.17562 1.35921 1.33235 0.86142 0.76873 0.83001 0.80001 1.21687 1.20721 1.21695 1.21532 0.94031 0.90134 0.92349 1.21747 1.01215 0.94840 0.97800 1.21850 0.99446 0.91454 0.88841 1.21331 0.93274 0.98312 0.96003 0.90928 0.91244 0.91135 0.82994 0.83090 0.87590 0.87700 0.89381 0.91076 0.92378 0.89312 0.92157 0.92684 0.92029 0.95721 0.93841 0.96450 0.94562 0.90568 0.91856 0.90167 0.90818 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 10.04 36.00 0.36 -0.31 16 2 C -0.14 -1.24 5.90 -104.49 -0.62 -1.86 16 3 C 0.09 0.93 10.86 -17.54 -0.19 0.74 16 4 N -0.48 -5.71 10.36 -13.25 -0.14 -5.85 16 5 C 0.11 1.16 10.86 -17.55 -0.19 0.97 16 6 C -0.11 -1.11 4.39 -104.48 -0.46 -1.57 16 7 C -0.10 -0.83 4.20 -29.03 -0.12 -0.95 16 8 C 0.51 6.40 7.69 -10.98 -0.08 6.32 16 9 O -0.54 -8.97 15.44 5.56 0.09 -8.88 16 10 N -0.61 -7.27 2.96 -172.56 -0.51 -7.78 16 11 C 0.11 1.58 6.12 -3.63 -0.02 1.56 16 12 C -0.11 -1.73 4.87 -27.01 -0.13 -1.86 16 13 C -0.07 -1.10 0.55 -153.99 -0.08 -1.18 16 14 C -0.14 -2.32 4.91 -25.24 -0.12 -2.44 16 15 C 0.17 4.02 5.07 -2.96 -0.01 4.00 16 16 N -0.60 -14.85 3.38 -170.17 -0.58 -15.43 16 17 C -0.23 -6.23 10.26 -15.06 -0.15 -6.38 16 18 H 0.08 2.01 7.84 -52.49 -0.41 1.60 16 19 C -0.01 -0.25 5.45 -17.43 -0.09 -0.34 16 20 N -0.92 -26.68 10.45 55.49 0.58 -26.10 16 21 Si 0.91 22.00 29.56 -169.99 -5.02 16.98 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 C 0.15 2.85 6.16 -2.75 -0.02 2.84 16 26 C -0.12 -1.35 4.84 -26.99 -0.13 -1.48 16 27 C 0.11 1.02 6.07 -3.62 -0.02 1.00 16 28 C -0.06 -0.61 9.55 -39.28 -0.37 -0.99 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 31 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 32 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.15 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.11 0.64 7.88 -51.93 -0.41 0.23 16 35 H 0.10 0.67 7.65 -51.93 -0.40 0.27 16 36 H 0.09 1.35 6.99 -51.93 -0.36 0.99 16 37 H 0.07 1.00 6.55 -51.93 -0.34 0.66 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.69 7.82 -51.93 -0.41 1.28 16 40 H 0.06 0.95 6.17 -51.93 -0.32 0.63 16 41 H 0.05 0.87 7.98 -51.93 -0.41 0.45 16 42 H 0.06 1.61 6.88 -51.93 -0.36 1.25 16 43 H 0.02 0.64 7.97 -51.93 -0.41 0.22 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.02 0.34 7.99 -51.93 -0.42 -0.07 16 46 H 0.04 0.72 8.03 -51.93 -0.42 0.30 16 47 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.08 0.52 5.91 -51.93 -0.31 0.22 16 50 H 0.07 0.69 7.62 -51.93 -0.40 0.30 16 51 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 LS Contribution 395.76 15.07 5.96 5.96 Total: -1.00 -33.79 395.76 -10.39 -44.18 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -8.30 Total: -1.14 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.47 Total: -1.94 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.64 Total: -55.16 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.79 -10.39 -44.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035214183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.640 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds