Wall clock time and date at job start Wed Apr 1 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31882 * 119.61655 * 2 1 4 4 C 1.31852 * 121.72563 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.76540 * 359.97438 * 4 3 2 6 6 C 1.38622 * 119.15736 * 359.77148 * 5 4 3 7 7 C 1.38178 * 119.61615 * 180.02562 * 2 1 3 8 8 C 1.50702 * 120.42017 * 359.97438 * 7 2 1 9 9 C 1.50691 * 109.47563 * 85.00081 * 8 7 2 10 10 O 1.21286 * 119.99766 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00226 * 180.02562 * 9 8 7 12 12 C 1.46941 * 120.55367 * 180.02562 * 11 9 8 13 13 C 1.53333 * 108.68764 * 125.62698 * 12 11 9 14 14 C 1.52103 * 109.44416 * 53.30334 * 13 12 11 15 15 C 1.54391 * 110.51280 * 64.09319 * 14 13 12 16 16 C 1.54448 * 102.87090 * 83.32985 * 15 14 13 17 17 N 1.47085 * 107.29889 * 21.50939 * 16 15 14 18 18 C 1.36932 * 125.62582 * 180.96949 * 17 16 15 19 19 H 1.08008 * 119.99900 * 189.80083 * 18 17 16 20 20 C 1.38813 * 120.00606 * 9.79748 * 18 17 16 21 21 N 1.31612 * 120.00346 * 208.95226 * 20 18 17 22 22 Si 1.86795 * 119.99699 * 28.95134 * 20 18 17 23 23 H 1.48502 * 109.47477 * 275.30216 * 22 20 18 24 24 H 1.48501 * 109.47387 * 35.30155 * 22 20 18 25 25 H 1.48497 * 109.47357 * 155.30134 * 22 20 18 26 26 C 1.47569 * 108.74352 * 1.22821 * 17 16 15 27 27 C 1.52107 * 111.60214 * 300.69308 * 14 13 12 28 28 C 1.46925 * 120.55333 * 359.97438 * 11 9 8 29 29 H 1.08999 * 109.46962 * 269.97317 * 1 2 3 30 30 H 1.08994 * 109.47499 * 29.97600 * 1 2 3 31 31 H 1.09001 * 109.47129 * 149.97829 * 1 2 3 32 32 H 1.07999 * 119.61989 * 179.97438 * 4 3 2 33 33 H 1.07995 * 120.41965 * 180.02562 * 5 4 3 34 34 H 1.07997 * 120.79344 * 180.22990 * 6 5 4 35 35 H 1.09002 * 109.46530 * 324.99550 * 8 7 2 36 36 H 1.09006 * 109.46779 * 205.00539 * 8 7 2 37 37 H 1.09002 * 109.60248 * 5.86007 * 12 11 9 38 38 H 1.09003 * 109.59887 * 245.38801 * 12 11 9 39 39 H 1.09001 * 109.47421 * 293.31323 * 13 12 11 40 40 H 1.08997 * 109.48269 * 173.30186 * 13 12 11 41 41 H 1.08999 * 110.72355 * 324.98567 * 15 14 13 42 42 H 1.08999 * 110.73294 * 201.67838 * 15 14 13 43 43 H 1.09005 * 109.88025 * 262.08337 * 16 15 14 44 44 H 1.09002 * 109.88083 * 140.93421 * 16 15 14 45 45 H 0.97003 * 120.00354 * 4.82071 * 21 20 18 46 46 H 1.08997 * 110.37508 * 95.25854 * 26 17 16 47 47 H 1.08992 * 110.38043 * 217.61228 * 26 17 16 48 48 H 1.09001 * 109.47853 * 179.29676 * 27 14 13 49 49 H 1.09003 * 109.47445 * 299.31479 * 27 14 13 50 50 H 1.09004 * 109.60149 * 354.12693 * 28 11 9 51 51 H 1.09000 * 109.60348 * 114.60753 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4764 1.1950 -0.0005 5 6 4.2267 0.0341 -0.0005 6 6 3.5766 -1.1902 0.0048 7 6 2.1899 -1.2013 -0.0005 8 6 1.4372 -2.5069 -0.0005 9 6 1.0784 -2.8800 -1.4158 10 8 1.4017 -2.1566 -2.3341 11 7 0.3975 -4.0169 -1.6610 12 6 0.0419 -4.3927 -3.0363 13 6 0.5661 -5.8074 -3.3101 14 6 0.0645 -6.7515 -2.2283 15 6 -1.4747 -6.8618 -2.2777 16 6 -1.7085 -7.9242 -3.3740 17 7 -0.4687 -8.7059 -3.4971 18 6 -0.2586 -9.7353 -4.3753 19 1 0.6243 -10.3508 -4.2847 20 6 -1.1804 -9.9881 -5.3819 21 7 -1.3313 -11.2110 -5.8442 22 14 -2.2068 -8.5923 -6.0803 23 1 -3.4024 -8.3811 -5.2253 24 1 -1.3953 -7.3490 -6.1123 25 1 -2.6386 -8.9370 -7.4587 26 6 0.5093 -8.2018 -2.5137 27 6 0.5233 -6.3134 -0.8458 28 6 -0.0006 -4.9017 -0.5577 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 3.9753 2.1529 -0.0009 33 1 5.3057 0.0803 -0.0005 34 1 4.1367 -2.1136 0.0087 35 1 0.5267 -2.4012 0.5894 36 1 2.0628 -3.2869 0.4335 37 1 0.4973 -3.6920 -3.7362 38 1 -1.0419 -4.3757 -3.1514 39 1 1.6561 -5.7979 -3.3074 40 1 0.2082 -6.1458 -4.2825 41 1 -1.9208 -5.9089 -2.5623 42 1 -1.8681 -7.2025 -1.3199 43 1 -1.9340 -7.4353 -4.3219 44 1 -2.5320 -8.5782 -3.0869 45 1 -0.8502 -11.9472 -5.4349 46 1 0.4733 -8.7987 -1.6024 47 1 1.5137 -8.2137 -2.9368 48 1 0.1352 -7.0049 -0.0980 49 1 1.6126 -6.3111 -0.8083 50 1 0.4268 -4.5368 0.3762 51 1 -1.0877 -4.9241 -0.4810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035227750.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:16 Heat of formation + Delta-G solvation = 26.885019 kcal Electronic energy + Delta-G solvation = -30752.875329 eV Core-core repulsion = 26845.650423 eV Total energy + Delta-G solvation = -3907.224907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.03995 -40.24584 -38.78016 -36.05931 -34.16653 -33.25675 -33.18251 -31.38301 -31.32187 -29.13619 -28.96711 -27.67363 -26.87241 -23.86815 -23.69895 -22.92165 -22.73029 -22.04074 -20.45460 -19.81742 -18.28545 -17.48570 -17.17679 -16.90260 -16.70679 -16.07740 -15.54427 -15.36446 -15.10273 -14.89270 -14.64530 -14.16242 -13.75485 -13.70541 -13.63056 -13.42676 -13.35458 -13.17831 -12.91400 -12.72210 -12.62551 -12.49747 -12.43624 -12.31412 -11.89499 -11.64665 -11.41581 -11.15973 -11.12342 -10.97640 -10.63663 -10.37702 -10.30630 -10.13163 -9.98800 -9.80418 -9.70236 -9.57955 -9.15792 -9.03694 -8.68928 -8.44233 -7.06636 -6.36799 -3.16998 0.81608 1.03085 2.45513 2.84085 3.42927 3.51888 3.52116 3.70107 4.03423 4.25208 4.37785 4.46137 4.57996 4.62844 4.65108 4.68712 4.72872 4.90160 4.96577 5.00903 5.05269 5.10750 5.19043 5.24225 5.27152 5.30483 5.33203 5.39644 5.41507 5.45049 5.65644 5.66242 5.74424 5.77052 5.77330 5.88961 5.90184 5.94233 5.95703 6.02973 6.21596 6.29444 6.32518 6.44089 6.49600 6.53620 6.62327 6.72871 6.81255 7.26361 7.71179 7.74680 8.02286 8.34178 9.02255 9.59071 10.26513 11.12501 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025755 B = 0.002394 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.909234 B =11692.793180 C =11865.273262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.144 3.856 3 N -0.486 5.486 4 C 0.100 3.900 5 C -0.179 4.179 6 C -0.061 4.061 7 C -0.115 4.115 8 C -0.099 4.099 9 C 0.515 3.485 10 O -0.536 6.536 11 N -0.607 5.607 12 C 0.111 3.889 13 C -0.113 4.113 14 C -0.074 4.074 15 C -0.122 4.122 16 C 0.121 3.879 17 N -0.608 5.608 18 C -0.331 4.331 19 H 0.076 0.924 20 C -0.014 4.014 21 N -0.913 5.913 22 Si 1.054 2.946 23 H -0.294 1.294 24 H -0.293 1.293 25 H -0.300 1.300 26 C 0.146 3.854 27 C -0.117 4.117 28 C 0.106 3.894 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.025 0.975 44 H 0.037 0.963 45 H 0.264 0.736 46 H 0.025 0.975 47 H 0.042 0.958 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.082 0.918 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.158 20.856 17.674 28.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.007 3.993 3 N -0.195 5.195 4 C -0.057 4.057 5 C -0.199 4.199 6 C -0.087 4.087 7 C -0.118 4.118 8 C -0.140 4.140 9 C 0.303 3.697 10 O -0.412 6.412 11 N -0.341 5.341 12 C -0.011 4.011 13 C -0.151 4.151 14 C -0.075 4.075 15 C -0.160 4.160 16 C -0.004 4.004 17 N -0.335 5.335 18 C -0.458 4.458 19 H 0.094 0.906 20 C -0.215 4.215 21 N -0.553 5.553 22 Si 0.887 3.113 23 H -0.222 1.222 24 H -0.221 1.221 25 H -0.228 1.228 26 C 0.020 3.980 27 C -0.156 4.156 28 C -0.017 4.017 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.172 0.828 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.042 0.958 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.060 0.940 48 H 0.097 0.903 49 H 0.085 0.915 50 H 0.100 0.900 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.754 22.289 15.940 27.812 hybrid contribution 1.759 -1.329 1.105 2.466 sum 6.513 20.960 17.045 27.790 Atomic orbital electron populations 1.20750 0.89095 1.03802 1.02739 1.21051 0.96836 0.87712 0.93727 1.67516 1.10118 1.29070 1.12809 1.22718 0.89468 0.98455 0.95041 1.22075 1.01432 0.93360 1.03000 1.21447 0.93563 0.98647 0.95028 1.20097 0.94227 0.94888 1.02569 1.20671 1.02015 0.95615 0.95662 1.20399 0.77720 0.80759 0.90848 1.90729 1.53506 1.50778 1.46214 1.48155 1.55798 1.21775 1.08347 1.21750 1.00167 0.96839 0.82324 1.21653 1.00711 0.92827 0.99939 1.21143 0.95846 0.96661 0.93857 1.22648 0.94994 0.98944 0.99423 1.21616 0.90817 0.92413 0.95580 1.44824 1.08936 1.38886 1.40852 1.19992 1.10008 1.05745 1.10017 0.90607 1.25736 0.98469 1.01029 0.96258 1.70890 1.39888 0.98424 1.46105 0.83961 0.75810 0.75626 0.75859 1.22249 1.22086 1.22831 1.21583 0.93611 0.89815 0.92944 1.21730 1.01212 0.95318 0.97320 1.21851 1.00496 0.90370 0.88977 0.90307 0.90245 0.90916 0.82814 0.84788 0.84946 0.87556 0.87744 0.89135 0.91186 0.91817 0.89634 0.91496 0.91389 0.95790 0.94556 0.92629 0.95738 0.94005 0.90323 0.91537 0.89969 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.39 36.01 0.34 -0.60 16 2 C 0.14 1.59 6.78 -82.59 -0.56 1.03 16 3 N -0.49 -5.69 10.27 -9.47 -0.10 -5.79 16 4 C 0.10 0.95 11.18 -17.54 -0.20 0.75 16 5 C -0.18 -1.51 10.11 -39.44 -0.40 -1.91 16 6 C -0.06 -0.56 9.84 -39.28 -0.39 -0.95 16 7 C -0.12 -1.15 4.39 -104.48 -0.46 -1.61 16 8 C -0.10 -0.80 3.50 -29.04 -0.10 -0.90 16 9 C 0.52 5.99 6.91 -10.99 -0.08 5.92 16 10 O -0.54 -8.47 15.44 5.55 0.09 -8.39 16 11 N -0.61 -6.65 2.96 -172.60 -0.51 -7.16 16 12 C 0.11 1.44 6.12 -3.63 -0.02 1.42 16 13 C -0.11 -1.68 4.87 -27.02 -0.13 -1.82 16 14 C -0.07 -1.07 0.55 -153.98 -0.08 -1.15 16 15 C -0.12 -1.85 4.92 -25.24 -0.12 -1.97 16 16 C 0.12 2.53 4.61 -2.96 -0.01 2.52 16 17 N -0.61 -14.41 3.28 -170.18 -0.56 -14.97 16 18 C -0.33 -9.34 10.41 -15.06 -0.16 -9.50 16 19 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 20 C -0.01 -0.40 5.41 -17.43 -0.09 -0.50 16 21 N -0.91 -28.44 13.70 55.49 0.76 -27.68 16 22 Si 1.05 26.59 24.74 -169.99 -4.20 22.39 16 23 H -0.29 -7.00 6.74 56.52 0.38 -6.62 16 24 H -0.29 -7.02 6.86 56.52 0.39 -6.63 16 25 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 26 C 0.15 2.76 6.16 -2.75 -0.02 2.74 16 27 C -0.12 -1.21 4.84 -27.03 -0.13 -1.35 16 28 C 0.11 0.89 6.07 -3.65 -0.02 0.86 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.64 6.15 -51.93 -0.32 0.32 16 32 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.11 0.62 6.79 -51.93 -0.35 0.27 16 36 H 0.10 0.62 7.62 -51.93 -0.40 0.23 16 37 H 0.09 1.29 6.99 -51.93 -0.36 0.93 16 38 H 0.07 0.87 6.55 -51.93 -0.34 0.53 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.53 7.82 -51.93 -0.41 1.12 16 41 H 0.07 0.90 6.17 -51.93 -0.32 0.58 16 42 H 0.07 0.91 7.98 -51.93 -0.41 0.50 16 43 H 0.02 0.55 3.71 -51.93 -0.19 0.35 16 44 H 0.04 0.81 8.00 -51.93 -0.42 0.40 16 45 H 0.26 8.12 8.73 -40.82 -0.36 7.76 16 46 H 0.02 0.46 8.00 -51.93 -0.42 0.04 16 47 H 0.04 0.81 8.03 -51.93 -0.42 0.40 16 48 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.08 0.46 5.92 -51.93 -0.31 0.15 16 51 H 0.07 0.58 7.62 -51.93 -0.40 0.18 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -35.42 386.14 -9.39 -44.81 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -8.04 Total: -2.03 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.64 Total: -7.01 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.41 Total: -55.59 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.39 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -4.20 Total: 22.39 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.42 -9.39 -44.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035227750.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.694 kcal (2) G-P(sol) polarization free energy of solvation -35.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds